0.028639
0.000000
0.000000
0.000000
0.027849
0.000000
0.000000
0.000000
0.016410
0.00000
0.00000
0.00000
Bowman, G.D.
Nodelman, I.M.
Schutt, C.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
34.917
35.908
60.937
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Sr 2
87.620
STRONTIUM ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
304
861
871
10.1006/jmbi.2000.4250
11124032
Crystal structure of the oligomerization domain of NSP4 from rotavirus reveals a core metal-binding site.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-05-12
BRANDEIS - B4
MAD
M
x-ray
1
0.9785
1.0
0.9788
1.0
0.95
1.0
X12C
NSLS
0.9785,0.9788,0.95
SYNCHROTRON
NSLS BEAMLINE X12C
5404.255
NON-STRUCTURAL GLYCOPROTEIN NSP4
OLIGOMERIZATION DOMAIN
2
syn
polymer
87.620
STRONTIUM ION
1
syn
non-polymer
18.015
water
88
nat
water
no
yes
IEKQMDRVVKEMRRQLE(MSE)IDKLTTREIEQVELLKRIYDKLTVQ
IEKQMDRVVKEMRRQLEMIDKLTTREIEQVELLKRIYDKLTVQ
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.77
30.40
VAPOR DIFFUSION, HANGING DROP
8.5
PEG400, magnesium sulfate, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
1
0
2001-01-10
1
1
2008-04-27
1
2
2011-07-13
NON-STRUCTURAL GLYCOPROTEIN NSP4 complexed with calcium ion
RCSB
Y
RCSB
2000-10-11
REL
REL
SR
STRONTIUM ION
HOH
water
This sequence is derived from NSP4 from Simian 11 rotavirus (strain SA11).
sample
SR
201
2
SR
SR
201
B
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
227
3
HOH
HOH
227
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
267
3
HOH
HOH
267
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
279
3
HOH
HOH
279
A
HOH
288
3
HOH
HOH
288
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
300
3
HOH
HOH
300
A
HOH
302
3
HOH
HOH
302
A
HOH
202
3
HOH
HOH
202
B
HOH
207
3
HOH
HOH
207
B
HOH
210
3
HOH
HOH
210
B
HOH
212
3
HOH
HOH
212
B
HOH
213
3
HOH
HOH
213
B
HOH
214
3
HOH
HOH
214
B
HOH
215
3
HOH
HOH
215
B
HOH
216
3
HOH
HOH
216
B
HOH
218
3
HOH
HOH
218
B
HOH
219
3
HOH
HOH
219
B
HOH
221
3
HOH
HOH
221
B
HOH
226
3
HOH
HOH
226
B
HOH
228
3
HOH
HOH
228
B
HOH
229
3
HOH
HOH
229
B
HOH
230
3
HOH
HOH
230
B
HOH
231
3
HOH
HOH
231
B
HOH
232
3
HOH
HOH
232
B
HOH
233
3
HOH
HOH
233
B
HOH
234
3
HOH
HOH
234
B
HOH
253
3
HOH
HOH
253
B
HOH
254
3
HOH
HOH
254
B
HOH
255
3
HOH
HOH
255
B
HOH
257
3
HOH
HOH
257
B
HOH
258
3
HOH
HOH
258
B
HOH
259
3
HOH
HOH
259
B
HOH
260
3
HOH
HOH
260
B
HOH
261
3
HOH
HOH
261
B
HOH
265
3
HOH
HOH
265
B
HOH
266
3
HOH
HOH
266
B
HOH
282
3
HOH
HOH
282
B
HOH
283
3
HOH
HOH
283
B
HOH
285
3
HOH
HOH
285
B
HOH
286
3
HOH
HOH
286
B
HOH
287
3
HOH
HOH
287
B
HOH
289
3
HOH
HOH
289
B
HOH
290
3
HOH
HOH
290
B
HOH
291
3
HOH
HOH
291
B
HOH
292
3
HOH
HOH
292
B
HOH
296
3
HOH
HOH
296
B
HOH
299
3
HOH
HOH
299
B
HOH
301
3
HOH
HOH
301
B
HOH
303
3
HOH
HOH
303
B
HOH
304
3
HOH
HOH
304
B
HOH
305
3
HOH
HOH
305
B
HOH
306
3
HOH
HOH
306
B
HOH
307
3
HOH
HOH
307
B
ILE
95
n
1
ILE
95
A
GLU
96
n
2
GLU
96
A
ALA
97
n
3
LYS
97
A
GLN
98
n
4
GLN
98
A
MET
99
n
5
MET
99
A
ASP
100
n
6
ASP
100
A
ARG
101
n
7
ARG
101
A
VAL
102
n
8
VAL
102
A
VAL
103
n
9
VAL
103
A
LYS
104
n
10
LYS
104
A
GLU
105
n
11
GLU
105
A
MET
106
n
12
MET
106
A
ARG
107
n
13
ARG
107
A
ALA
108
n
14
ARG
108
A
GLN
109
n
15
GLN
109
A
LEU
110
n
16
LEU
110
A
ALA
111
n
17
GLU
111
A
MSE
112
n
18
MSE
112
A
ILE
113
n
19
ILE
113
A
ASP
114
n
20
ASP
114
A
LYS
115
n
21
LYS
115
A
LEU
116
n
22
LEU
116
A
THR
117
n
23
THR
117
A
THR
118
n
24
THR
118
A
ARG
119
n
25
ARG
119
A
GLU
120
n
26
GLU
120
A
ILE
121
n
27
ILE
121
A
GLU
122
n
28
GLU
122
A
GLN
123
n
29
GLN
123
A
VAL
124
n
30
VAL
124
A
GLU
125
n
31
GLU
125
A
LEU
126
n
32
LEU
126
A
LEU
127
n
33
LEU
127
A
LYS
128
n
34
LYS
128
A
ARG
129
n
35
ARG
129
A
ILE
130
n
36
ILE
130
A
TYR
131
n
37
TYR
131
A
ASP
132
n
38
ASP
132
A
LYS
133
n
39
LYS
133
A
LEU
134
n
40
LEU
134
A
THR
135
n
41
THR
135
A
VAL
136
n
42
VAL
136
A
GLN
137
n
43
GLN
137
A
ILE
95
n
1
ILE
95
B
GLU
96
n
2
GLU
96
B
LYS
97
n
3
LYS
97
B
ALA
98
n
4
GLN
98
B
MET
99
n
5
MET
99
B
ASP
100
n
6
ASP
100
B
ARG
101
n
7
ARG
101
B
VAL
102
n
8
VAL
102
B
VAL
103
n
9
VAL
103
B
LYS
104
n
10
LYS
104
B
GLU
105
n
11
GLU
105
B
MET
106
n
12
MET
106
B
ARG
107
n
13
ARG
107
B
ARG
108
n
14
ARG
108
B
GLN
109
n
15
GLN
109
B
LEU
110
n
16
LEU
110
B
GLU
111
n
17
GLU
111
B
MSE
112
n
18
MSE
112
B
ILE
113
n
19
ILE
113
B
ASP
114
n
20
ASP
114
B
ALA
115
n
21
LYS
115
B
LEU
116
n
22
LEU
116
B
THR
117
n
23
THR
117
B
THR
118
n
24
THR
118
B
ARG
119
n
25
ARG
119
B
GLU
120
n
26
GLU
120
B
ILE
121
n
27
ILE
121
B
GLU
122
n
28
GLU
122
B
GLN
123
n
29
GLN
123
B
VAL
124
n
30
VAL
124
B
GLU
125
n
31
GLU
125
B
LEU
126
n
32
LEU
126
B
LEU
127
n
33
LEU
127
B
LYS
128
n
34
LYS
128
B
ARG
129
n
35
ARG
129
B
ILE
130
n
36
ILE
130
B
TYR
131
n
37
TYR
131
B
ASP
132
n
38
ASP
132
B
LYS
133
n
39
LYS
133
B
LEU
134
n
40
LEU
134
B
THR
135
n
41
THR
135
B
ALA
136
n
42
VAL
136
B
GLN
137
n
43
GLN
137
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
8490
-147
10080
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
1_555
148.6
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
1_555
72.8
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
1_555
76.2
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
1_555
92.2
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
1_555
84.7
B
GLU
120
B
OE1
GLU
26
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
1_555
74.7
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
2_665
137.1
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
2_665
73.7
B
GLU
120
B
OE1
GLU
26
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
2_665
149.9
B
GLN
123
B
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
2_665
102.2
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
73.0
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
121.5
B
GLU
120
B
OE1
GLU
26
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
122.8
B
GLN
123
B
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
149.9
B
GLN
123
B
OE1
GLN
29
2_665
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
74.7
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
104.3
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
60.7
B
GLU
120
B
OE1
GLU
26
1_555
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
73.0
B
GLN
123
B
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
137.1
B
GLN
123
B
OE1
GLN
29
2_665
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
92.2
B
GLU
120
B
OE1
GLU
26
2_665
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
72.9
B
HOH
261
E
O
HOH
1_555
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
60.7
A
GLN
123
A
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
145.5
B
GLU
120
B
OE1
GLU
26
1_555
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
121.5
B
GLN
123
B
OE1
GLN
29
1_555
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
73.7
B
GLN
123
B
OE1
GLN
29
2_665
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
84.7
B
GLU
120
B
OE1
GLU
26
2_665
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
76.2
B
HOH
261
E
O
HOH
2_665
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
148.6
A
MSE
112
SELENOMETHIONINE
A
MSE
18
MET
B
MSE
112
SELENOMETHIONINE
B
MSE
18
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
34.9170000000
35.9080000000
0.0000000000
1
B
SR
201
C
SR
1
B
HOH
202
E
HOH
1
A
CG
LYS
97
A
CG
LYS
3
1
Y
1
A
CD
LYS
97
A
CD
LYS
3
1
Y
1
A
CE
LYS
97
A
CE
LYS
3
1
Y
1
A
NZ
LYS
97
A
NZ
LYS
3
1
Y
1
A
CG
ARG
108
A
CG
ARG
14
1
Y
1
A
CD
ARG
108
A
CD
ARG
14
1
Y
1
A
NE
ARG
108
A
NE
ARG
14
1
Y
1
A
CZ
ARG
108
A
CZ
ARG
14
1
Y
1
A
NH1
ARG
108
A
NH1
ARG
14
1
Y
1
A
NH2
ARG
108
A
NH2
ARG
14
1
Y
1
A
CG
GLU
111
A
CG
GLU
17
1
Y
1
A
CD
GLU
111
A
CD
GLU
17
1
Y
1
A
OE1
GLU
111
A
OE1
GLU
17
1
Y
1
A
OE2
GLU
111
A
OE2
GLU
17
1
Y
1
B
CG
GLN
98
B
CG
GLN
4
1
Y
1
B
CD
GLN
98
B
CD
GLN
4
1
Y
1
B
OE1
GLN
98
B
OE1
GLN
4
1
Y
1
B
NE2
GLN
98
B
NE2
GLN
4
1
Y
1
B
CG
LYS
115
B
CG
LYS
21
1
Y
1
B
CD
LYS
115
B
CD
LYS
21
1
Y
1
B
CE
LYS
115
B
CE
LYS
21
1
Y
1
B
NZ
LYS
115
B
NZ
LYS
21
1
Y
1
B
CG1
VAL
136
B
CG1
VAL
42
1
Y
1
B
CG2
VAL
136
B
CG2
VAL
42
1
Y
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
25.2
8.44
0.00
0.00
2.81
0.00
-11.26
Four water molecules have been modelled above the metal and hydrating water molecules. It is also possible that the four water molecules (two per ASU) are instead a small molecule lying across the two-fold crystallographic axis.
There are five residues whose side chains have alternative rotomer conformations and have been modelled as such: A98, A106, A112, B99, and B114.
0.239
0.007
0.216
0.218
0.216
1.86
19.34
1235
12450
12259
10.1
98.5
RANDOM
711648.50
0.00
1
RESTRAINED
THROUGHOUT
0.0
0.0
MAD
Engh & Huber
FLAT MODEL
54.74
0.346
0.26
0.22
5.00
0.12
0.13
1.86
19.34
88
809
1
0
720
0.006
0.9
16.9
0.63
1.43
2.00
1.98
2.50
3.01
2.50
4.50
3.00
0.262
0.019
0.252
1.98
187
1769
6
9.6
94.9
19.7
1.86
20.0
1G1J
138038
12450
0.0
0.0
0.051
1
19.3
3.7
99.9
0.117
1.86
1.94
1
3.0
100.0
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
NON-STRUCTURAL GLYCOPROTEIN NSP4
CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN FROM ROTAVIRUS NSP4
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
The biological assembly is a tetramer which can be generated from chains A and B by constructing symmetry mates across the two-fold.
A
ILE
95
A
ILE
1
HELX_P
A
THR
135
A
THR
41
1
1
41
B
ILE
95
B
ILE
1
HELX_P
B
LYS
133
B
LYS
39
1
2
39
covale
1.321
A
A
GLU
111
A
C
GLU
17
1_555
A
MSE
112
A
N
MSE
18
1_555
covale
1.334
B
A
GLU
111
A
C
GLU
17
1_555
A
MSE
112
A
N
MSE
18
1_555
covale
1.327
A
A
MSE
112
A
C
MSE
18
1_555
A
ILE
113
A
N
ILE
19
1_555
covale
1.330
B
A
MSE
112
A
C
MSE
18
1_555
A
ILE
113
A
N
ILE
19
1_555
covale
1.333
B
GLU
111
B
C
GLU
17
1_555
B
MSE
112
B
N
MSE
18
1_555
covale
1.328
B
MSE
112
B
C
MSE
18
1_555
B
ILE
113
B
N
ILE
19
1_555
metalc
2.773
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
1_555
metalc
2.444
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
1_555
metalc
2.781
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
1_555
metalc
2.481
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
1_555
metalc
2.481
B
SR
201
C
SR
SR
1_555
B
GLN
123
B
OE1
GLN
29
2_665
metalc
2.781
B
SR
201
C
SR
SR
1_555
B
GLU
120
B
OE1
GLU
26
2_665
metalc
2.772
B
SR
201
C
SR
SR
1_555
B
HOH
261
E
O
HOH
2_665
metalc
2.445
B
SR
201
C
SR
SR
1_555
A
GLN
123
A
OE1
GLN
29
2_665
METAL BINDING PROTEIN
NS28, parallel coiled-coil, homo-tetramer, metal binding site, strontium, cation, METAL BINDING PROTEIN
O92323_9REOV
UNP
1
95
O92323
IEKQMDRVVKEMRRQLEMIDKLTTREIEQVELLKRIYDKLTVQ
95
137
1G1J
95
137
O92323
A
1
1
43
95
137
1G1J
95
137
O92323
B
1
1
43
1
MET
MODIFIED RESIDUE
MSE
112
1G1J
A
O92323
UNP
112
18
2
MET
MODIFIED RESIDUE
MSE
112
1G1J
B
O92323
UNP
112
18
BINDING SITE FOR RESIDUE SR B 201
Software
8
A
GLN
123
A
GLN
29
8
2_665
A
GLN
123
A
GLN
29
8
1_555
B
GLU
120
B
GLU
26
8
2_665
B
GLU
120
B
GLU
26
8
1_555
B
GLN
123
B
GLN
29
8
2_665
B
GLN
123
B
GLN
29
8
1_555
B
HOH
261
E
HOH
8
2_665
B
HOH
261
E
HOH
8
1_555
18
P 21 21 2