0.028639 0.000000 0.000000 0.000000 0.027849 0.000000 0.000000 0.000000 0.016410 0.00000 0.00000 0.00000 Bowman, G.D. Nodelman, I.M. Schutt, C.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 34.917 35.908 60.937 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Sr 2 87.620 STRONTIUM ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 304 861 871 10.1006/jmbi.2000.4250 11124032 Crystal structure of the oligomerization domain of NSP4 from rotavirus reveals a core metal-binding site. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-05-12 BRANDEIS - B4 MAD M x-ray 1 0.9785 1.0 0.9788 1.0 0.95 1.0 X12C NSLS 0.9785,0.9788,0.95 SYNCHROTRON NSLS BEAMLINE X12C 5404.255 NON-STRUCTURAL GLYCOPROTEIN NSP4 OLIGOMERIZATION DOMAIN 2 syn polymer 87.620 STRONTIUM ION 1 syn non-polymer 18.015 water 88 nat water no yes IEKQMDRVVKEMRRQLE(MSE)IDKLTTREIEQVELLKRIYDKLTVQ IEKQMDRVVKEMRRQLEMIDKLTTREIEQVELLKRIYDKLTVQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.77 30.40 VAPOR DIFFUSION, HANGING DROP 8.5 PEG400, magnesium sulfate, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 2001-01-10 1 1 2008-04-27 1 2 2011-07-13 NON-STRUCTURAL GLYCOPROTEIN NSP4 complexed with calcium ion RCSB Y RCSB 2000-10-11 REL REL SR STRONTIUM ION HOH water This sequence is derived from NSP4 from Simian 11 rotavirus (strain SA11). sample SR 201 2 SR SR 201 B HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 227 3 HOH HOH 227 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 267 3 HOH HOH 267 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 279 3 HOH HOH 279 A HOH 288 3 HOH HOH 288 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 300 3 HOH HOH 300 A HOH 302 3 HOH HOH 302 A HOH 202 3 HOH HOH 202 B HOH 207 3 HOH HOH 207 B HOH 210 3 HOH HOH 210 B HOH 212 3 HOH HOH 212 B HOH 213 3 HOH HOH 213 B HOH 214 3 HOH HOH 214 B HOH 215 3 HOH HOH 215 B HOH 216 3 HOH HOH 216 B HOH 218 3 HOH HOH 218 B HOH 219 3 HOH HOH 219 B HOH 221 3 HOH HOH 221 B HOH 226 3 HOH HOH 226 B HOH 228 3 HOH HOH 228 B HOH 229 3 HOH HOH 229 B HOH 230 3 HOH HOH 230 B HOH 231 3 HOH HOH 231 B HOH 232 3 HOH HOH 232 B HOH 233 3 HOH HOH 233 B HOH 234 3 HOH HOH 234 B HOH 253 3 HOH HOH 253 B HOH 254 3 HOH HOH 254 B HOH 255 3 HOH HOH 255 B HOH 257 3 HOH HOH 257 B HOH 258 3 HOH HOH 258 B HOH 259 3 HOH HOH 259 B HOH 260 3 HOH HOH 260 B HOH 261 3 HOH HOH 261 B HOH 265 3 HOH HOH 265 B HOH 266 3 HOH HOH 266 B HOH 282 3 HOH HOH 282 B HOH 283 3 HOH HOH 283 B HOH 285 3 HOH HOH 285 B HOH 286 3 HOH HOH 286 B HOH 287 3 HOH HOH 287 B HOH 289 3 HOH HOH 289 B HOH 290 3 HOH HOH 290 B HOH 291 3 HOH HOH 291 B HOH 292 3 HOH HOH 292 B HOH 296 3 HOH HOH 296 B HOH 299 3 HOH HOH 299 B HOH 301 3 HOH HOH 301 B HOH 303 3 HOH HOH 303 B HOH 304 3 HOH HOH 304 B HOH 305 3 HOH HOH 305 B HOH 306 3 HOH HOH 306 B HOH 307 3 HOH HOH 307 B ILE 95 n 1 ILE 95 A GLU 96 n 2 GLU 96 A ALA 97 n 3 LYS 97 A GLN 98 n 4 GLN 98 A MET 99 n 5 MET 99 A ASP 100 n 6 ASP 100 A ARG 101 n 7 ARG 101 A VAL 102 n 8 VAL 102 A VAL 103 n 9 VAL 103 A LYS 104 n 10 LYS 104 A GLU 105 n 11 GLU 105 A MET 106 n 12 MET 106 A ARG 107 n 13 ARG 107 A ALA 108 n 14 ARG 108 A GLN 109 n 15 GLN 109 A LEU 110 n 16 LEU 110 A ALA 111 n 17 GLU 111 A MSE 112 n 18 MSE 112 A ILE 113 n 19 ILE 113 A ASP 114 n 20 ASP 114 A LYS 115 n 21 LYS 115 A LEU 116 n 22 LEU 116 A THR 117 n 23 THR 117 A THR 118 n 24 THR 118 A ARG 119 n 25 ARG 119 A GLU 120 n 26 GLU 120 A ILE 121 n 27 ILE 121 A GLU 122 n 28 GLU 122 A GLN 123 n 29 GLN 123 A VAL 124 n 30 VAL 124 A GLU 125 n 31 GLU 125 A LEU 126 n 32 LEU 126 A LEU 127 n 33 LEU 127 A LYS 128 n 34 LYS 128 A ARG 129 n 35 ARG 129 A ILE 130 n 36 ILE 130 A TYR 131 n 37 TYR 131 A ASP 132 n 38 ASP 132 A LYS 133 n 39 LYS 133 A LEU 134 n 40 LEU 134 A THR 135 n 41 THR 135 A VAL 136 n 42 VAL 136 A GLN 137 n 43 GLN 137 A ILE 95 n 1 ILE 95 B GLU 96 n 2 GLU 96 B LYS 97 n 3 LYS 97 B ALA 98 n 4 GLN 98 B MET 99 n 5 MET 99 B ASP 100 n 6 ASP 100 B ARG 101 n 7 ARG 101 B VAL 102 n 8 VAL 102 B VAL 103 n 9 VAL 103 B LYS 104 n 10 LYS 104 B GLU 105 n 11 GLU 105 B MET 106 n 12 MET 106 B ARG 107 n 13 ARG 107 B ARG 108 n 14 ARG 108 B GLN 109 n 15 GLN 109 B LEU 110 n 16 LEU 110 B GLU 111 n 17 GLU 111 B MSE 112 n 18 MSE 112 B ILE 113 n 19 ILE 113 B ASP 114 n 20 ASP 114 B ALA 115 n 21 LYS 115 B LEU 116 n 22 LEU 116 B THR 117 n 23 THR 117 B THR 118 n 24 THR 118 B ARG 119 n 25 ARG 119 B GLU 120 n 26 GLU 120 B ILE 121 n 27 ILE 121 B GLU 122 n 28 GLU 122 B GLN 123 n 29 GLN 123 B VAL 124 n 30 VAL 124 B GLU 125 n 31 GLU 125 B LEU 126 n 32 LEU 126 B LEU 127 n 33 LEU 127 B LYS 128 n 34 LYS 128 B ARG 129 n 35 ARG 129 B ILE 130 n 36 ILE 130 B TYR 131 n 37 TYR 131 B ASP 132 n 38 ASP 132 B LYS 133 n 39 LYS 133 B LEU 134 n 40 LEU 134 B THR 135 n 41 THR 135 B ALA 136 n 42 VAL 136 B GLN 137 n 43 GLN 137 B author_and_software_defined_assembly PISA,PQS 4 tetrameric 8490 -147 10080 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 1_555 148.6 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 1_555 72.8 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 1_555 76.2 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 1_555 92.2 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 1_555 84.7 B GLU 120 B OE1 GLU 26 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 1_555 74.7 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 2_665 137.1 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 2_665 73.7 B GLU 120 B OE1 GLU 26 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 2_665 149.9 B GLN 123 B OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 2_665 102.2 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 73.0 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 121.5 B GLU 120 B OE1 GLU 26 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 122.8 B GLN 123 B OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 149.9 B GLN 123 B OE1 GLN 29 2_665 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 74.7 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 104.3 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 60.7 B GLU 120 B OE1 GLU 26 1_555 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 73.0 B GLN 123 B OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 137.1 B GLN 123 B OE1 GLN 29 2_665 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 92.2 B GLU 120 B OE1 GLU 26 2_665 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 72.9 B HOH 261 E O HOH 1_555 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 60.7 A GLN 123 A OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 145.5 B GLU 120 B OE1 GLU 26 1_555 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 121.5 B GLN 123 B OE1 GLN 29 1_555 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 73.7 B GLN 123 B OE1 GLN 29 2_665 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 84.7 B GLU 120 B OE1 GLU 26 2_665 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 76.2 B HOH 261 E O HOH 2_665 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 148.6 A MSE 112 SELENOMETHIONINE A MSE 18 MET B MSE 112 SELENOMETHIONINE B MSE 18 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 34.9170000000 35.9080000000 0.0000000000 1 B SR 201 C SR 1 B HOH 202 E HOH 1 A CG LYS 97 A CG LYS 3 1 Y 1 A CD LYS 97 A CD LYS 3 1 Y 1 A CE LYS 97 A CE LYS 3 1 Y 1 A NZ LYS 97 A NZ LYS 3 1 Y 1 A CG ARG 108 A CG ARG 14 1 Y 1 A CD ARG 108 A CD ARG 14 1 Y 1 A NE ARG 108 A NE ARG 14 1 Y 1 A CZ ARG 108 A CZ ARG 14 1 Y 1 A NH1 ARG 108 A NH1 ARG 14 1 Y 1 A NH2 ARG 108 A NH2 ARG 14 1 Y 1 A CG GLU 111 A CG GLU 17 1 Y 1 A CD GLU 111 A CD GLU 17 1 Y 1 A OE1 GLU 111 A OE1 GLU 17 1 Y 1 A OE2 GLU 111 A OE2 GLU 17 1 Y 1 B CG GLN 98 B CG GLN 4 1 Y 1 B CD GLN 98 B CD GLN 4 1 Y 1 B OE1 GLN 98 B OE1 GLN 4 1 Y 1 B NE2 GLN 98 B NE2 GLN 4 1 Y 1 B CG LYS 115 B CG LYS 21 1 Y 1 B CD LYS 115 B CD LYS 21 1 Y 1 B CE LYS 115 B CE LYS 21 1 Y 1 B NZ LYS 115 B NZ LYS 21 1 Y 1 B CG1 VAL 136 B CG1 VAL 42 1 Y 1 B CG2 VAL 136 B CG2 VAL 42 1 Y PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 25.2 8.44 0.00 0.00 2.81 0.00 -11.26 Four water molecules have been modelled above the metal and hydrating water molecules. It is also possible that the four water molecules (two per ASU) are instead a small molecule lying across the two-fold crystallographic axis. There are five residues whose side chains have alternative rotomer conformations and have been modelled as such: A98, A106, A112, B99, and B114. 0.239 0.007 0.216 0.218 0.216 1.86 19.34 1235 12450 12259 10.1 98.5 RANDOM 711648.50 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 MAD Engh & Huber FLAT MODEL 54.74 0.346 0.26 0.22 5.00 0.12 0.13 1.86 19.34 88 809 1 0 720 0.006 0.9 16.9 0.63 1.43 2.00 1.98 2.50 3.01 2.50 4.50 3.00 0.262 0.019 0.252 1.98 187 1769 6 9.6 94.9 19.7 1.86 20.0 1G1J 138038 12450 0.0 0.0 0.051 1 19.3 3.7 99.9 0.117 1.86 1.94 1 3.0 100.0 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS NON-STRUCTURAL GLYCOPROTEIN NSP4 CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN FROM ROTAVIRUS NSP4 1 N N 1 N N 2 N N 3 N N 3 N N The biological assembly is a tetramer which can be generated from chains A and B by constructing symmetry mates across the two-fold. A ILE 95 A ILE 1 HELX_P A THR 135 A THR 41 1 1 41 B ILE 95 B ILE 1 HELX_P B LYS 133 B LYS 39 1 2 39 covale 1.321 A A GLU 111 A C GLU 17 1_555 A MSE 112 A N MSE 18 1_555 covale 1.334 B A GLU 111 A C GLU 17 1_555 A MSE 112 A N MSE 18 1_555 covale 1.327 A A MSE 112 A C MSE 18 1_555 A ILE 113 A N ILE 19 1_555 covale 1.330 B A MSE 112 A C MSE 18 1_555 A ILE 113 A N ILE 19 1_555 covale 1.333 B GLU 111 B C GLU 17 1_555 B MSE 112 B N MSE 18 1_555 covale 1.328 B MSE 112 B C MSE 18 1_555 B ILE 113 B N ILE 19 1_555 metalc 2.773 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 1_555 metalc 2.444 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 1_555 metalc 2.781 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 1_555 metalc 2.481 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 1_555 metalc 2.481 B SR 201 C SR SR 1_555 B GLN 123 B OE1 GLN 29 2_665 metalc 2.781 B SR 201 C SR SR 1_555 B GLU 120 B OE1 GLU 26 2_665 metalc 2.772 B SR 201 C SR SR 1_555 B HOH 261 E O HOH 2_665 metalc 2.445 B SR 201 C SR SR 1_555 A GLN 123 A OE1 GLN 29 2_665 METAL BINDING PROTEIN NS28, parallel coiled-coil, homo-tetramer, metal binding site, strontium, cation, METAL BINDING PROTEIN O92323_9REOV UNP 1 95 O92323 IEKQMDRVVKEMRRQLEMIDKLTTREIEQVELLKRIYDKLTVQ 95 137 1G1J 95 137 O92323 A 1 1 43 95 137 1G1J 95 137 O92323 B 1 1 43 1 MET MODIFIED RESIDUE MSE 112 1G1J A O92323 UNP 112 18 2 MET MODIFIED RESIDUE MSE 112 1G1J B O92323 UNP 112 18 BINDING SITE FOR RESIDUE SR B 201 Software 8 A GLN 123 A GLN 29 8 2_665 A GLN 123 A GLN 29 8 1_555 B GLU 120 B GLU 26 8 2_665 B GLU 120 B GLU 26 8 1_555 B GLN 123 B GLN 29 8 2_665 B GLN 123 B GLN 29 8 1_555 B HOH 261 E HOH 8 2_665 B HOH 261 E HOH 8 1_555 18 P 21 21 2