0.00699
0.00000
0.00456
0.00000
0.01551
0.00000
0.00000
0.00000
0.01400
0.00000
0.00000
0.00000
Clements, J.M.
Beckett, P.
Brown, A.
Catlin, C.
Lobell, M.
Palan, S.
Thomas, W.
Whittaker, M.
Baker, P.J.
Rodgers, H.F.
Barynin, V.
Rice, D.W.
Hunter, M.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
123.11
90.00
143.140
64.470
85.290
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C16 H31 N3 O4
329.435
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE
BB-3497
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
N
N
85
N
C
N
86
N
O
N
87
N
O
N
88
N
C
N
89
N
N
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
R
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
S
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
Y
196
N
C
Y
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
S
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
NI
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
R
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
US
Antimicrob.Agents Chemother.
AMACCQ
0788
0066-4804
45
563
570
10.1128/AAC.45.2.563-570.2001
11158755
Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor.
2001
10.2210/pdb1g27/pdb
pdb_00001g27
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
AREA DETECTOR
1999-04-20
MARRESEARCH
MSC Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
19226.248
POLYPEPTIDE DEFORMYLASE
3.5.1.31
3
man
polymer
58.693
NICKEL (II) ION
3
syn
non-polymer
329.435
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE
3
syn
non-polymer
18.015
water
76
nat
water
N-FORMYLMETHIONYLAMINOACYL-TRNA DEFORMYLASE, PDF, FMS
E.C.3.5.1.31
no
no
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK
SGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK
LDRLKARA
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK
SGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK
LDRLKARA
A,B,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
DEF
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
PET24-PDF
1
2.86
56.94
VAPOR DIFFUSION, HANGING DROP
5.6
10mg/ml PDF, 20mM BB-3497, 25% PEG 4000, 0.1M sodium citrate, 0.2M ammonium acetate,
pH 5.6, VAPOR DIFFUSION, HANGING DROP at 290K
290
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2001-10-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-10-17
REL
NI
NICKEL (II) ION
BB1
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE
HOH
water
NI
9001
2
NI
NI
9001
A
BB1
1001
3
BB1
BB1
1001
A
NI
9002
2
NI
NI
9002
B
BB1
2002
3
BB1
BB1
2002
B
NI
9003
2
NI
NI
9003
C
BB1
3003
3
BB1
BB1
3003
C
HOH
2
4
HOH
HOH
9002
A
HOH
4
4
HOH
HOH
9003
A
HOH
6
4
HOH
HOH
9004
A
HOH
9
4
HOH
HOH
9005
A
HOH
10
4
HOH
HOH
9006
A
HOH
11
4
HOH
HOH
9007
A
HOH
14
4
HOH
HOH
9008
A
HOH
20
4
HOH
HOH
9009
A
HOH
26
4
HOH
HOH
9010
A
HOH
30
4
HOH
HOH
9011
A
HOH
31
4
HOH
HOH
9012
A
HOH
33
4
HOH
HOH
9013
A
HOH
38
4
HOH
HOH
9014
A
HOH
39
4
HOH
HOH
9015
A
HOH
43
4
HOH
HOH
9016
A
HOH
47
4
HOH
HOH
9017
A
HOH
49
4
HOH
HOH
9018
A
HOH
50
4
HOH
HOH
9019
A
HOH
51
4
HOH
HOH
9020
A
HOH
52
4
HOH
HOH
9021
A
HOH
56
4
HOH
HOH
9022
A
HOH
60
4
HOH
HOH
9023
A
HOH
61
4
HOH
HOH
9024
A
HOH
68
4
HOH
HOH
9025
A
HOH
69
4
HOH
HOH
9026
A
HOH
70
4
HOH
HOH
9027
A
HOH
71
4
HOH
HOH
9028
A
HOH
72
4
HOH
HOH
9029
A
HOH
74
4
HOH
HOH
9030
A
HOH
75
4
HOH
HOH
9031
A
HOH
3
4
HOH
HOH
9003
B
HOH
12
4
HOH
HOH
9004
B
HOH
13
4
HOH
HOH
9005
B
HOH
15
4
HOH
HOH
9006
B
HOH
16
4
HOH
HOH
9007
B
HOH
19
4
HOH
HOH
9008
B
HOH
21
4
HOH
HOH
9009
B
HOH
24
4
HOH
HOH
9010
B
HOH
29
4
HOH
HOH
9011
B
HOH
32
4
HOH
HOH
9012
B
HOH
34
4
HOH
HOH
9013
B
HOH
35
4
HOH
HOH
9014
B
HOH
36
4
HOH
HOH
9015
B
HOH
40
4
HOH
HOH
9016
B
HOH
42
4
HOH
HOH
9017
B
HOH
44
4
HOH
HOH
9018
B
HOH
45
4
HOH
HOH
9019
B
HOH
53
4
HOH
HOH
9020
B
HOH
54
4
HOH
HOH
9021
B
HOH
55
4
HOH
HOH
9022
B
HOH
57
4
HOH
HOH
9023
B
HOH
62
4
HOH
HOH
9024
B
HOH
63
4
HOH
HOH
9025
B
HOH
64
4
HOH
HOH
9026
B
HOH
65
4
HOH
HOH
9027
B
HOH
66
4
HOH
HOH
9028
B
HOH
67
4
HOH
HOH
9029
B
HOH
76
4
HOH
HOH
9030
B
HOH
1
4
HOH
HOH
9004
C
HOH
5
4
HOH
HOH
9005
C
HOH
7
4
HOH
HOH
9006
C
HOH
8
4
HOH
HOH
9007
C
HOH
17
4
HOH
HOH
9008
C
HOH
18
4
HOH
HOH
9009
C
HOH
22
4
HOH
HOH
9010
C
HOH
23
4
HOH
HOH
9011
C
HOH
25
4
HOH
HOH
9012
C
HOH
27
4
HOH
HOH
9013
C
HOH
28
4
HOH
HOH
9014
C
HOH
37
4
HOH
HOH
9015
C
HOH
41
4
HOH
HOH
9016
C
HOH
46
4
HOH
HOH
9017
C
HOH
48
4
HOH
HOH
9018
C
HOH
58
4
HOH
HOH
9019
C
HOH
59
4
HOH
HOH
9020
C
HOH
73
4
HOH
HOH
9021
C
SER
1
n
1
SER
1
A
VAL
2
n
2
VAL
2
A
LEU
3
n
3
LEU
3
A
GLN
4
n
4
GLN
4
A
VAL
5
n
5
VAL
5
A
LEU
6
n
6
LEU
6
A
HIS
7
n
7
HIS
7
A
ILE
8
n
8
ILE
8
A
PRO
9
n
9
PRO
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
PRO
19
n
19
PRO
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
VAL
23
n
23
VAL
23
A
ASN
24
n
24
ASN
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
GLN
28
n
28
GLN
28
A
ARG
29
n
29
ARG
29
A
ILE
30
n
30
ILE
30
A
VAL
31
n
31
VAL
31
A
ASP
32
n
32
ASP
32
A
ASP
33
n
33
ASP
33
A
MET
34
n
34
MET
34
A
PHE
35
n
35
PHE
35
A
GLU
36
n
36
GLU
36
A
THR
37
n
37
THR
37
A
MET
38
n
38
MET
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
GLU
41
n
41
GLU
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
ILE
44
n
44
ILE
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
GLN
50
n
50
GLN
50
A
VAL
51
n
51
VAL
51
A
ASP
52
n
52
ASP
52
A
ILE
53
n
53
ILE
53
A
HIS
54
n
54
HIS
54
A
GLN
55
n
55
GLN
55
A
ARG
56
n
56
ARG
56
A
ILE
57
n
57
ILE
57
A
ILE
58
n
58
ILE
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
VAL
62
n
62
VAL
62
A
SER
63
n
63
SER
63
A
GLU
64
n
64
GLU
64
A
ASN
65
n
65
ASN
65
A
ARG
66
n
66
ARG
66
A
ASP
67
n
67
ASP
67
A
GLU
68
n
68
GLU
68
A
ARG
69
n
69
ARG
69
A
LEU
70
n
70
LEU
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
ILE
73
n
73
ILE
73
A
ASN
74
n
74
ASN
74
A
PRO
75
n
75
PRO
75
A
GLU
76
n
76
GLU
76
A
LEU
77
n
77
LEU
77
A
LEU
78
n
78
LEU
78
A
GLU
79
n
79
GLU
79
A
LYS
80
n
80
LYS
80
A
SER
81
n
81
SER
81
A
GLY
82
n
82
GLY
82
A
GLU
83
n
83
GLU
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
ILE
86
n
86
ILE
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
GLY
89
n
89
GLY
89
A
CYS
90
n
90
CYS
90
A
LEU
91
n
91
LEU
91
A
SER
92
n
92
SER
92
A
ILE
93
n
93
ILE
93
A
PRO
94
n
94
PRO
94
A
GLU
95
n
95
GLU
95
A
GLN
96
n
96
GLN
96
A
ARG
97
n
97
ARG
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
PRO
101
n
101
PRO
101
A
ARG
102
n
102
ARG
102
A
ALA
103
n
103
ALA
103
A
GLU
104
n
104
GLU
104
A
LYS
105
n
105
LYS
105
A
VAL
106
n
106
VAL
106
A
LYS
107
n
107
LYS
107
A
ILE
108
n
108
ILE
108
A
ARG
109
n
109
ARG
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
ASP
112
n
112
ASP
112
A
ARG
113
n
113
ARG
113
A
ASP
114
n
114
ASP
114
A
GLY
115
n
115
GLY
115
A
LYS
116
n
116
LYS
116
A
PRO
117
n
117
PRO
117
A
PHE
118
n
118
PHE
118
A
GLU
119
n
119
GLU
119
A
LEU
120
n
120
LEU
120
A
GLU
121
n
121
GLU
121
A
ALA
122
n
122
ALA
122
A
ASP
123
n
123
ASP
123
A
GLY
124
n
124
GLY
124
A
LEU
125
n
125
LEU
125
A
LEU
126
n
126
LEU
126
A
ALA
127
n
127
ALA
127
A
ILE
128
n
128
ILE
128
A
CYS
129
n
129
CYS
129
A
ILE
130
n
130
ILE
130
A
GLN
131
n
131
GLN
131
A
HIS
132
n
132
HIS
132
A
GLU
133
n
133
GLU
133
A
MET
134
n
134
MET
134
A
ASP
135
n
135
ASP
135
A
HIS
136
n
136
HIS
136
A
LEU
137
n
137
LEU
137
A
VAL
138
n
138
VAL
138
A
GLY
139
n
139
GLY
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
PHE
142
n
142
PHE
142
A
MET
143
n
143
MET
143
A
ASP
144
n
144
ASP
144
A
TYR
145
n
145
TYR
145
A
LEU
146
n
146
LEU
146
A
SER
147
n
147
SER
147
A
PRO
148
n
148
PRO
148
A
LEU
149
n
149
LEU
149
A
LYS
150
n
150
LYS
150
A
GLN
151
n
151
GLN
151
A
GLN
152
n
152
GLN
152
A
ARG
153
n
153
ARG
153
A
ILE
154
n
154
ILE
154
A
ARG
155
n
155
ARG
155
A
GLN
156
n
156
GLN
156
A
LYS
157
n
157
LYS
157
A
VAL
158
n
158
VAL
158
A
GLU
159
n
159
GLU
159
A
LYS
160
n
160
LYS
160
A
LEU
161
n
161
LEU
161
A
ASP
162
n
162
ASP
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
SER
1
n
1
SER
1
B
VAL
2
n
2
VAL
2
B
LEU
3
n
3
LEU
3
B
GLN
4
n
4
GLN
4
B
VAL
5
n
5
VAL
5
B
LEU
6
n
6
LEU
6
B
HIS
7
n
7
HIS
7
B
ILE
8
n
8
ILE
8
B
PRO
9
n
9
PRO
9
B
ASP
10
n
10
ASP
10
B
GLU
11
n
11
GLU
11
B
ARG
12
n
12
ARG
12
B
LEU
13
n
13
LEU
13
B
ARG
14
n
14
ARG
14
B
LYS
15
n
15
LYS
15
B
VAL
16
n
16
VAL
16
B
ALA
17
n
17
ALA
17
B
LYS
18
n
18
LYS
18
B
PRO
19
n
19
PRO
19
B
VAL
20
n
20
VAL
20
B
GLU
21
n
21
GLU
21
B
GLU
22
n
22
GLU
22
B
VAL
23
n
23
VAL
23
B
ASN
24
n
24
ASN
24
B
ALA
25
n
25
ALA
25
B
GLU
26
n
26
GLU
26
B
ILE
27
n
27
ILE
27
B
GLN
28
n
28
GLN
28
B
ARG
29
n
29
ARG
29
B
ILE
30
n
30
ILE
30
B
VAL
31
n
31
VAL
31
B
ASP
32
n
32
ASP
32
B
ASP
33
n
33
ASP
33
B
MET
34
n
34
MET
34
B
PHE
35
n
35
PHE
35
B
GLU
36
n
36
GLU
36
B
THR
37
n
37
THR
37
B
MET
38
n
38
MET
38
B
TYR
39
n
39
TYR
39
B
ALA
40
n
40
ALA
40
B
GLU
41
n
41
GLU
41
B
GLU
42
n
42
GLU
42
B
GLY
43
n
43
GLY
43
B
ILE
44
n
44
ILE
44
B
GLY
45
n
45
GLY
45
B
LEU
46
n
46
LEU
46
B
ALA
47
n
47
ALA
47
B
ALA
48
n
48
ALA
48
B
THR
49
n
49
THR
49
B
GLN
50
n
50
GLN
50
B
VAL
51
n
51
VAL
51
B
ASP
52
n
52
ASP
52
B
ILE
53
n
53
ILE
53
B
HIS
54
n
54
HIS
54
B
GLN
55
n
55
GLN
55
B
ARG
56
n
56
ARG
56
B
ILE
57
n
57
ILE
57
B
ILE
58
n
58
ILE
58
B
VAL
59
n
59
VAL
59
B
ILE
60
n
60
ILE
60
B
ASP
61
n
61
ASP
61
B
VAL
62
n
62
VAL
62
B
SER
63
n
63
SER
63
B
GLU
64
n
64
GLU
64
B
ASN
65
n
65
ASN
65
B
ARG
66
n
66
ARG
66
B
ASP
67
n
67
ASP
67
B
GLU
68
n
68
GLU
68
B
ARG
69
n
69
ARG
69
B
LEU
70
n
70
LEU
70
B
VAL
71
n
71
VAL
71
B
LEU
72
n
72
LEU
72
B
ILE
73
n
73
ILE
73
B
ASN
74
n
74
ASN
74
B
PRO
75
n
75
PRO
75
B
GLU
76
n
76
GLU
76
B
LEU
77
n
77
LEU
77
B
LEU
78
n
78
LEU
78
B
GLU
79
n
79
GLU
79
B
LYS
80
n
80
LYS
80
B
SER
81
n
81
SER
81
B
GLY
82
n
82
GLY
82
B
GLU
83
n
83
GLU
83
B
THR
84
n
84
THR
84
B
GLY
85
n
85
GLY
85
B
ILE
86
n
86
ILE
86
B
GLU
87
n
87
GLU
87
B
GLU
88
n
88
GLU
88
B
GLY
89
n
89
GLY
89
B
CYS
90
n
90
CYS
90
B
LEU
91
n
91
LEU
91
B
SER
92
n
92
SER
92
B
ILE
93
n
93
ILE
93
B
PRO
94
n
94
PRO
94
B
GLU
95
n
95
GLU
95
B
GLN
96
n
96
GLN
96
B
ARG
97
n
97
ARG
97
B
ALA
98
n
98
ALA
98
B
LEU
99
n
99
LEU
99
B
VAL
100
n
100
VAL
100
B
PRO
101
n
101
PRO
101
B
ARG
102
n
102
ARG
102
B
ALA
103
n
103
ALA
103
B
GLU
104
n
104
GLU
104
B
LYS
105
n
105
LYS
105
B
VAL
106
n
106
VAL
106
B
LYS
107
n
107
LYS
107
B
ILE
108
n
108
ILE
108
B
ARG
109
n
109
ARG
109
B
ALA
110
n
110
ALA
110
B
LEU
111
n
111
LEU
111
B
ASP
112
n
112
ASP
112
B
ARG
113
n
113
ARG
113
B
ASP
114
n
114
ASP
114
B
GLY
115
n
115
GLY
115
B
LYS
116
n
116
LYS
116
B
PRO
117
n
117
PRO
117
B
PHE
118
n
118
PHE
118
B
GLU
119
n
119
GLU
119
B
LEU
120
n
120
LEU
120
B
GLU
121
n
121
GLU
121
B
ALA
122
n
122
ALA
122
B
ASP
123
n
123
ASP
123
B
GLY
124
n
124
GLY
124
B
LEU
125
n
125
LEU
125
B
LEU
126
n
126
LEU
126
B
ALA
127
n
127
ALA
127
B
ILE
128
n
128
ILE
128
B
CYS
129
n
129
CYS
129
B
ILE
130
n
130
ILE
130
B
GLN
131
n
131
GLN
131
B
HIS
132
n
132
HIS
132
B
GLU
133
n
133
GLU
133
B
MET
134
n
134
MET
134
B
ASP
135
n
135
ASP
135
B
HIS
136
n
136
HIS
136
B
LEU
137
n
137
LEU
137
B
VAL
138
n
138
VAL
138
B
GLY
139
n
139
GLY
139
B
LYS
140
n
140
LYS
140
B
LEU
141
n
141
LEU
141
B
PHE
142
n
142
PHE
142
B
MET
143
n
143
MET
143
B
ASP
144
n
144
ASP
144
B
TYR
145
n
145
TYR
145
B
LEU
146
n
146
LEU
146
B
SER
147
n
147
SER
147
B
PRO
148
n
148
PRO
148
B
LEU
149
n
149
LEU
149
B
LYS
150
n
150
LYS
150
B
GLN
151
n
151
GLN
151
B
GLN
152
n
152
GLN
152
B
ARG
153
n
153
ARG
153
B
ILE
154
n
154
ILE
154
B
ARG
155
n
155
ARG
155
B
GLN
156
n
156
GLN
156
B
LYS
157
n
157
LYS
157
B
VAL
158
n
158
VAL
158
B
GLU
159
n
159
GLU
159
B
LYS
160
n
160
LYS
160
B
LEU
161
n
161
LEU
161
B
ASP
162
n
162
ASP
162
B
ARG
163
n
163
ARG
163
B
LEU
164
n
164
LEU
164
B
n
165
165
B
n
166
166
B
n
167
167
B
n
168
168
B
SER
1
n
1
SER
1
C
VAL
2
n
2
VAL
2
C
LEU
3
n
3
LEU
3
C
GLN
4
n
4
GLN
4
C
VAL
5
n
5
VAL
5
C
LEU
6
n
6
LEU
6
C
HIS
7
n
7
HIS
7
C
ILE
8
n
8
ILE
8
C
PRO
9
n
9
PRO
9
C
ASP
10
n
10
ASP
10
C
GLU
11
n
11
GLU
11
C
ARG
12
n
12
ARG
12
C
LEU
13
n
13
LEU
13
C
ARG
14
n
14
ARG
14
C
LYS
15
n
15
LYS
15
C
VAL
16
n
16
VAL
16
C
ALA
17
n
17
ALA
17
C
LYS
18
n
18
LYS
18
C
PRO
19
n
19
PRO
19
C
VAL
20
n
20
VAL
20
C
GLU
21
n
21
GLU
21
C
GLU
22
n
22
GLU
22
C
VAL
23
n
23
VAL
23
C
ASN
24
n
24
ASN
24
C
ALA
25
n
25
ALA
25
C
GLU
26
n
26
GLU
26
C
ILE
27
n
27
ILE
27
C
GLN
28
n
28
GLN
28
C
ARG
29
n
29
ARG
29
C
ILE
30
n
30
ILE
30
C
VAL
31
n
31
VAL
31
C
ASP
32
n
32
ASP
32
C
ASP
33
n
33
ASP
33
C
MET
34
n
34
MET
34
C
PHE
35
n
35
PHE
35
C
GLU
36
n
36
GLU
36
C
THR
37
n
37
THR
37
C
MET
38
n
38
MET
38
C
TYR
39
n
39
TYR
39
C
ALA
40
n
40
ALA
40
C
GLU
41
n
41
GLU
41
C
GLU
42
n
42
GLU
42
C
GLY
43
n
43
GLY
43
C
ILE
44
n
44
ILE
44
C
GLY
45
n
45
GLY
45
C
LEU
46
n
46
LEU
46
C
ALA
47
n
47
ALA
47
C
ALA
48
n
48
ALA
48
C
THR
49
n
49
THR
49
C
GLN
50
n
50
GLN
50
C
VAL
51
n
51
VAL
51
C
ASP
52
n
52
ASP
52
C
ILE
53
n
53
ILE
53
C
HIS
54
n
54
HIS
54
C
GLN
55
n
55
GLN
55
C
ARG
56
n
56
ARG
56
C
ILE
57
n
57
ILE
57
C
ILE
58
n
58
ILE
58
C
VAL
59
n
59
VAL
59
C
ILE
60
n
60
ILE
60
C
ASP
61
n
61
ASP
61
C
VAL
62
n
62
VAL
62
C
SER
63
n
63
SER
63
C
GLU
64
n
64
GLU
64
C
ASN
65
n
65
ASN
65
C
ARG
66
n
66
ARG
66
C
ASP
67
n
67
ASP
67
C
GLU
68
n
68
GLU
68
C
ARG
69
n
69
ARG
69
C
LEU
70
n
70
LEU
70
C
VAL
71
n
71
VAL
71
C
LEU
72
n
72
LEU
72
C
ILE
73
n
73
ILE
73
C
ASN
74
n
74
ASN
74
C
PRO
75
n
75
PRO
75
C
GLU
76
n
76
GLU
76
C
LEU
77
n
77
LEU
77
C
LEU
78
n
78
LEU
78
C
GLU
79
n
79
GLU
79
C
LYS
80
n
80
LYS
80
C
SER
81
n
81
SER
81
C
GLY
82
n
82
GLY
82
C
GLU
83
n
83
GLU
83
C
THR
84
n
84
THR
84
C
GLY
85
n
85
GLY
85
C
ILE
86
n
86
ILE
86
C
GLU
87
n
87
GLU
87
C
GLU
88
n
88
GLU
88
C
GLY
89
n
89
GLY
89
C
CYS
90
n
90
CYS
90
C
LEU
91
n
91
LEU
91
C
SER
92
n
92
SER
92
C
ILE
93
n
93
ILE
93
C
PRO
94
n
94
PRO
94
C
GLU
95
n
95
GLU
95
C
GLN
96
n
96
GLN
96
C
ARG
97
n
97
ARG
97
C
ALA
98
n
98
ALA
98
C
LEU
99
n
99
LEU
99
C
VAL
100
n
100
VAL
100
C
PRO
101
n
101
PRO
101
C
ARG
102
n
102
ARG
102
C
ALA
103
n
103
ALA
103
C
GLU
104
n
104
GLU
104
C
LYS
105
n
105
LYS
105
C
VAL
106
n
106
VAL
106
C
LYS
107
n
107
LYS
107
C
ILE
108
n
108
ILE
108
C
ARG
109
n
109
ARG
109
C
ALA
110
n
110
ALA
110
C
LEU
111
n
111
LEU
111
C
ASP
112
n
112
ASP
112
C
ARG
113
n
113
ARG
113
C
ASP
114
n
114
ASP
114
C
GLY
115
n
115
GLY
115
C
LYS
116
n
116
LYS
116
C
PRO
117
n
117
PRO
117
C
PHE
118
n
118
PHE
118
C
GLU
119
n
119
GLU
119
C
LEU
120
n
120
LEU
120
C
GLU
121
n
121
GLU
121
C
ALA
122
n
122
ALA
122
C
ASP
123
n
123
ASP
123
C
GLY
124
n
124
GLY
124
C
LEU
125
n
125
LEU
125
C
LEU
126
n
126
LEU
126
C
ALA
127
n
127
ALA
127
C
ILE
128
n
128
ILE
128
C
CYS
129
n
129
CYS
129
C
ILE
130
n
130
ILE
130
C
GLN
131
n
131
GLN
131
C
HIS
132
n
132
HIS
132
C
GLU
133
n
133
GLU
133
C
MET
134
n
134
MET
134
C
ASP
135
n
135
ASP
135
C
HIS
136
n
136
HIS
136
C
LEU
137
n
137
LEU
137
C
VAL
138
n
138
VAL
138
C
GLY
139
n
139
GLY
139
C
LYS
140
n
140
LYS
140
C
LEU
141
n
141
LEU
141
C
PHE
142
n
142
PHE
142
C
MET
143
n
143
MET
143
C
ASP
144
n
144
ASP
144
C
TYR
145
n
145
TYR
145
C
LEU
146
n
146
LEU
146
C
SER
147
n
147
SER
147
C
PRO
148
n
148
PRO
148
C
LEU
149
n
149
LEU
149
C
LYS
150
n
150
LYS
150
C
GLN
151
n
151
GLN
151
C
GLN
152
n
152
GLN
152
C
ARG
153
n
153
ARG
153
C
ILE
154
n
154
ILE
154
C
ARG
155
n
155
ARG
155
C
GLN
156
n
156
GLN
156
C
LYS
157
n
157
LYS
157
C
VAL
158
n
158
VAL
158
C
GLU
159
n
159
GLU
159
C
LYS
160
n
160
LYS
160
C
LEU
161
n
161
LEU
161
C
ASP
162
n
162
ASP
162
C
ARG
163
n
163
ARG
163
C
LEU
164
n
164
LEU
164
C
n
165
165
C
n
166
166
C
n
167
167
C
n
168
168
C
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
A
HIS
132
A
NE2
HIS
132
1_555
106.0
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
A
HIS
136
A
NE2
HIS
136
1_555
100.9
A
HIS
132
A
NE2
HIS
132
1_555
A
NI
9001
D
NI
NI
1_555
A
HIS
136
A
NE2
HIS
136
1_555
108.1
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O2
BB1
1_555
87.4
A
HIS
132
A
NE2
HIS
132
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O2
BB1
1_555
108.8
A
HIS
136
A
NE2
HIS
136
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O2
BB1
1_555
138.1
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O1
BB1
1_555
150.5
A
HIS
132
A
NE2
HIS
132
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O1
BB1
1_555
102.5
A
HIS
136
A
NE2
HIS
136
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O1
BB1
1_555
77.2
A
BB1
1001
E
O2
BB1
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
O1
BB1
1_555
76.1
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
N1
BB1
1_555
114.0
A
HIS
132
A
NE2
HIS
132
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
N1
BB1
1_555
98.5
A
HIS
136
A
NE2
HIS
136
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
N1
BB1
1_555
127.6
A
BB1
1001
E
O2
BB1
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
N1
BB1
1_555
26.7
A
BB1
1001
E
O1
BB1
1_555
A
NI
9001
D
NI
NI
1_555
A
BB1
1001
E
N1
BB1
1_555
53.1
B
CYS
90
B
SG
CYS
90
1_555
B
NI
9002
F
NI
NI
1_555
B
HIS
132
B
NE2
HIS
132
1_555
116.0
B
CYS
90
B
SG
CYS
90
1_555
B
NI
9002
F
NI
NI
1_555
B
HIS
136
B
NE2
HIS
136
1_555
102.9
B
HIS
132
B
NE2
HIS
132
1_555
B
NI
9002
F
NI
NI
1_555
B
HIS
136
B
NE2
HIS
136
1_555
96.2
B
CYS
90
B
SG
CYS
90
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O2
BB1
1_555
87.4
B
HIS
132
B
NE2
HIS
132
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O2
BB1
1_555
115.5
B
HIS
136
B
NE2
HIS
136
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O2
BB1
1_555
138.3
B
CYS
90
B
SG
CYS
90
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O1
BB1
1_555
152.9
B
HIS
132
B
NE2
HIS
132
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O1
BB1
1_555
90.0
B
HIS
136
B
NE2
HIS
136
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O1
BB1
1_555
80.3
B
BB1
2002
G
O2
BB1
1_555
B
NI
9002
F
NI
NI
1_555
B
BB1
2002
G
O1
BB1
1_555
73.7
C
CYS
90
C
SG
CYS
90
1_555
C
NI
9003
H
NI
NI
1_555
C
HIS
132
C
NE2
HIS
132
1_555
121.7
C
CYS
90
C
SG
CYS
90
1_555
C
NI
9003
H
NI
NI
1_555
C
HIS
136
C
NE2
HIS
136
1_555
93.9
C
HIS
132
C
NE2
HIS
132
1_555
C
NI
9003
H
NI
NI
1_555
C
HIS
136
C
NE2
HIS
136
1_555
102.5
C
CYS
90
C
SG
CYS
90
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O1
BB1
1_555
149.5
C
HIS
132
C
NE2
HIS
132
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O1
BB1
1_555
88.1
C
HIS
136
C
NE2
HIS
136
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O1
BB1
1_555
84.4
C
CYS
90
C
SG
CYS
90
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O2
BB1
1_555
90.9
C
HIS
132
C
NE2
HIS
132
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O2
BB1
1_555
115.7
C
HIS
136
C
NE2
HIS
136
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O2
BB1
1_555
131.2
C
BB1
3003
I
O1
BB1
1_555
C
NI
9003
H
NI
NI
1_555
C
BB1
3003
I
O2
BB1
1_555
68.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
46
A
O
LEU
46
A
N
VAL
59
A
N
VAL
59
A
N
ILE
60
A
N
ILE
60
A
O
LEU
70
A
O
LEU
70
A
O
SER
81
A
O
SER
81
A
N
LYS
105
A
N
LYS
105
A
O
ALA
110
A
O
ALA
110
A
N
PHE
118
A
N
PHE
118
A
N
GLU
88
A
N
GLU
88
A
O
ALA
98
A
O
ALA
98
B
O
LEU
46
B
O
LEU
46
B
N
VAL
59
B
N
VAL
59
B
O
ILE
60
B
O
ILE
60
B
N
LEU
70
B
N
LEU
70
B
O
SER
81
B
O
SER
81
B
N
LYS
105
B
N
LYS
105
B
O
ALA
110
B
O
ALA
110
B
N
PHE
118
B
N
PHE
118
B
O
CYS
90
B
O
CYS
90
B
N
ILE
93
B
N
ILE
93
C
O
LEU
46
C
O
LEU
46
C
N
VAL
59
C
N
VAL
59
C
O
ILE
60
C
O
ILE
60
C
N
LEU
70
C
N
LEU
70
C
O
SER
81
C
O
SER
81
C
N
LYS
105
C
N
LYS
105
C
O
ALA
110
C
O
ALA
110
C
N
PHE
118
C
N
PHE
118
C
O
CYS
90
C
O
CYS
90
C
N
ILE
93
C
N
ILE
93
1
A
LYS
165
A
LYS
165
1
Y
1
A
ALA
166
A
ALA
166
1
Y
1
A
ARG
167
A
ARG
167
1
Y
1
A
ALA
168
A
ALA
168
1
Y
1
B
LYS
165
B
LYS
165
1
Y
1
B
ALA
166
B
ALA
166
1
Y
1
B
ARG
167
B
ARG
167
1
Y
1
B
ALA
168
B
ALA
168
1
Y
1
C
LYS
165
C
LYS
165
1
Y
1
C
ALA
166
C
ALA
166
1
Y
1
C
ARG
167
C
ARG
167
1
Y
1
C
ALA
168
C
ALA
168
1
Y
1
C
C
O
O
LEU
LEU
161
164
2.06
1
C
C
O
N
ASP
LEU
162
164
2.09
1
A
A
O
NH2
GLY
ARG
43
66
2.13
1
C
C
C
N
ASP
LEU
162
164
2.19
1
B
ARG
97
0.080
SIDE CHAIN
1
4.56
0.50
120.30
124.86
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
97
97
97
N
1
B
B
CZ
NH1
ARG
ARG
97
97
0.102
0.013
1.326
1.428
N
1
B
B
CZ
NH2
ARG
ARG
97
97
0.101
0.013
1.326
1.427
N
1
A
ARG
56
-67.58
79.36
1
A
PRO
94
-36.03
123.81
1
B
PRO
9
-95.58
35.17
1
B
HIS
54
-94.97
57.85
1
B
GLU
95
72.18
-7.71
1
C
GLU
42
78.55
38.70
1
C
ARG
56
-67.84
71.98
1
C
ARG
66
32.77
41.06
1
C
GLU
68
-153.51
71.15
1
C
THR
84
-173.25
-174.03
1
C
ALA
98
-171.21
144.10
1
C
ASP
112
-72.36
-165.24
1
C
GLN
156
-47.33
-70.99
1
C
ARG
163
-53.42
11.86
0.2700000
0.2100000
0.2100000
0.2100000
2.10
20.0
1824
34657
34657
5.3
random
1
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
Engh & Huber
2.10
20.0
76
4093
72
0
3945
1.043
0.014
2.10
20.0
1G27
38303
36273
0.0
0.0
0.0400000
1
16.2
1.95
94.7
0.2400000
2.10
2.16
1.8
92.7
phasing
AMoRE
refinement
TNT
5E
data collection
MAR345
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE DEFORMYLASE COMPLEXED WITH THE INHIBITOR BB-3497
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
ASP
10
A
ASP
10
HELX_P
A
LYS
15
A
LYS
15
5
1
6
A
ASN
24
A
ASN
24
HELX_P
A
GLU
42
A
GLU
42
1
2
19
A
THR
49
A
THR
49
HELX_P
A
ASP
52
A
ASP
52
5
3
4
A
ASP
123
A
ASP
123
HELX_P
A
LEU
137
A
LEU
137
1
4
15
A
LEU
141
A
LEU
141
HELX_P
A
LEU
146
A
LEU
146
5
5
6
A
SER
147
A
SER
147
HELX_P
A
LEU
164
A
LEU
164
1
6
18
B
ASP
10
B
ASP
10
HELX_P
B
LYS
15
B
LYS
15
5
7
6
B
ASN
24
B
ASN
24
HELX_P
B
GLU
42
B
GLU
42
1
8
19
B
THR
49
B
THR
49
HELX_P
B
ASP
52
B
ASP
52
5
9
4
B
ASP
123
B
ASP
123
HELX_P
B
LEU
137
B
LEU
137
1
10
15
B
LEU
141
B
LEU
141
HELX_P
B
LEU
146
B
LEU
146
5
11
6
B
SER
147
B
SER
147
HELX_P
B
LEU
164
B
LEU
164
1
12
18
C
ASP
10
C
ASP
10
HELX_P
C
LYS
15
C
LYS
15
5
13
6
C
ASN
24
C
ASN
24
HELX_P
C
GLU
42
C
GLU
42
1
14
19
C
THR
49
C
THR
49
HELX_P
C
ASP
52
C
ASP
52
5
15
4
C
ASP
123
C
ASP
123
HELX_P
C
VAL
138
C
VAL
138
1
16
16
C
LEU
141
C
LEU
141
HELX_P
C
LEU
146
C
LEU
146
5
17
6
C
SER
147
C
SER
147
HELX_P
C
ARG
163
C
ARG
163
1
18
17
metalc
2.229
A
CYS
90
A
SG
CYS
90
1_555
A
NI
9001
D
NI
NI
1_555
metalc
2.366
A
HIS
132
A
NE2
HIS
132
1_555
A
NI
9001
D
NI
NI
1_555
metalc
2.157
A
HIS
136
A
NE2
HIS
136
1_555
A
NI
9001
D
NI
NI
1_555
metalc
1.882
A
BB1
1001
E
O2
BB1
1_555
A
NI
9001
D
NI
NI
1_555
metalc
2.156
A
BB1
1001
E
O1
BB1
1_555
A
NI
9001
D
NI
NI
1_555
metalc
2.714
A
BB1
1001
E
N1
BB1
1_555
A
NI
9001
D
NI
NI
1_555
metalc
2.164
B
CYS
90
B
SG
CYS
90
1_555
B
NI
9002
F
NI
NI
1_555
metalc
2.160
B
HIS
132
B
NE2
HIS
132
1_555
B
NI
9002
F
NI
NI
1_555
metalc
2.026
B
HIS
136
B
NE2
HIS
136
1_555
B
NI
9002
F
NI
NI
1_555
metalc
2.046
B
BB1
2002
G
O2
BB1
1_555
B
NI
9002
F
NI
NI
1_555
metalc
2.366
B
BB1
2002
G
O1
BB1
1_555
B
NI
9002
F
NI
NI
1_555
metalc
2.171
C
CYS
90
C
SG
CYS
90
1_555
C
NI
9003
H
NI
NI
1_555
metalc
2.037
C
HIS
132
C
NE2
HIS
132
1_555
C
NI
9003
H
NI
NI
1_555
metalc
2.164
C
HIS
136
C
NE2
HIS
136
1_555
C
NI
9003
H
NI
NI
1_555
metalc
2.378
C
BB1
3003
I
O1
BB1
1_555
C
NI
9003
H
NI
NI
1_555
metalc
2.060
C
BB1
3003
I
O2
BB1
1_555
C
NI
9003
H
NI
NI
1_555
HYDROLASE
BB-3497, inhibition, Polypeptide deformylase, hydrolase
A
ILE
8
A
ILE
8
1
A
PRO
9
A
PRO
9
7.25
B
ILE
8
B
ILE
8
1
B
PRO
9
B
PRO
9
6.82
C
ILE
8
C
ILE
8
1
C
PRO
9
C
PRO
9
2.97
DEF_ECOLI
UNP
1
1
P0A6K3
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK
SGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK
LDRLKARA
1
168
1G27
1
168
P0A6K3
A
1
1
168
1
168
1G27
1
168
P0A6K3
B
1
1
168
1
168
1G27
1
168
P0A6K3
C
1
1
168
5
2
5
2
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
45
A
GLY
45
A
ALA
47
A
ALA
47
A
ILE
57
A
ILE
57
A
ILE
60
A
ILE
60
A
LEU
70
A
LEU
70
A
SER
81
A
SER
81
A
LYS
105
A
LYS
105
A
LEU
111
A
LEU
111
A
PRO
117
A
PRO
117
A
ALA
122
A
ALA
122
A
GLU
87
A
GLU
87
A
GLY
89
A
GLY
89
A
ARG
97
A
ARG
97
A
LEU
99
A
LEU
99
B
GLY
45
B
GLY
45
B
ALA
47
B
ALA
47
B
ILE
57
B
ILE
57
B
ILE
60
B
ILE
60
B
LEU
70
B
LEU
70
B
SER
81
B
SER
81
B
LYS
105
B
LYS
105
B
LEU
111
B
LEU
111
B
PRO
117
B
PRO
117
B
ALA
122
B
ALA
122
B
GLU
87
B
GLU
87
B
CYS
90
B
CYS
90
B
ILE
93
B
ILE
93
B
LEU
99
B
LEU
99
C
GLY
45
C
GLY
45
C
ALA
47
C
ALA
47
C
ILE
57
C
ILE
57
C
ILE
60
C
ILE
60
C
LEU
70
C
LEU
70
C
SER
81
C
SER
81
C
LYS
105
C
LYS
105
C
LEU
111
C
LEU
111
C
PRO
117
C
PRO
117
C
ALA
122
C
ALA
122
C
GLU
87
C
GLU
87
C
CYS
90
C
CYS
90
C
ILE
93
C
ILE
93
C
LEU
99
C
LEU
99
BINDING SITE FOR RESIDUE NI A 9001
A
NI
9001
Software
5
BINDING SITE FOR RESIDUE NI B 9002
B
NI
9002
Software
5
BINDING SITE FOR RESIDUE NI C 9003
C
NI
9003
Software
5
BINDING SITE FOR RESIDUE BB1 A 1001
A
BB1
1001
Software
11
BINDING SITE FOR RESIDUE BB1 B 2002
B
BB1
2002
Software
11
BINDING SITE FOR RESIDUE BB1 C 3003
C
BB1
3003
Software
11
A
GLN
50
A
GLN
50
5
1_555
A
CYS
90
A
CYS
90
5
1_555
A
HIS
132
A
HIS
132
5
1_555
A
HIS
136
A
HIS
136
5
1_555
A
BB1
1001
E
BB1
5
1_555
B
GLN
50
B
GLN
50
5
1_555
B
CYS
90
B
CYS
90
5
1_555
B
HIS
132
B
HIS
132
5
1_555
B
HIS
136
B
HIS
136
5
1_555
B
BB1
2002
G
BB1
5
1_555
C
GLN
50
C
GLN
50
5
1_555
C
CYS
90
C
CYS
90
5
1_555
C
HIS
132
C
HIS
132
5
1_555
C
HIS
136
C
HIS
136
5
1_555
C
BB1
3003
I
BB1
5
1_555
A
GLY
43
A
GLY
43
11
1_555
A
ILE
44
A
ILE
44
11
1_555
A
GLY
45
A
GLY
45
11
1_555
A
GLN
50
A
GLN
50
11
1_555
A
GLY
89
A
GLY
89
11
1_555
A
CYS
90
A
CYS
90
11
1_555
A
LEU
91
A
LEU
91
11
1_555
A
HIS
132
A
HIS
132
11
1_555
A
GLU
133
A
GLU
133
11
1_555
A
HIS
136
A
HIS
136
11
1_555
A
NI
9001
D
NI
11
1_555
B
GLY
43
B
GLY
43
11
1_555
B
ILE
44
B
ILE
44
11
1_555
B
GLY
45
B
GLY
45
11
1_555
B
GLN
50
B
GLN
50
11
1_555
B
GLY
89
B
GLY
89
11
1_555
B
CYS
90
B
CYS
90
11
1_555
B
LEU
91
B
LEU
91
11
1_555
B
HIS
132
B
HIS
132
11
1_555
B
GLU
133
B
GLU
133
11
1_555
B
HIS
136
B
HIS
136
11
1_555
B
NI
9002
F
NI
11
1_555
C
GLY
43
C
GLY
43
11
1_555
C
ILE
44
C
ILE
44
11
1_555
C
GLY
45
C
GLY
45
11
1_555
C
GLN
50
C
GLN
50
11
1_555
C
GLY
89
C
GLY
89
11
1_555
C
CYS
90
C
CYS
90
11
1_555
C
LEU
91
C
LEU
91
11
1_555
C
HIS
132
C
HIS
132
11
1_555
C
GLU
133
C
GLU
133
11
1_555
C
HIS
136
C
HIS
136
11
1_555
C
NI
9003
H
NI
11
1_555
5
monoclinic
C 1 2 1