71.01 5.000 9.659 14.120 A O5' C 1 ATOM A O5' C 1 1 1.00 1 O 65.37 6.230 9.076 13.648 A C5' C 1 ATOM A C5' C 1 1 1.00 1 C 62.70 6.256 7.565 13.498 A C4' C 1 ATOM A C4' C 1 1 1.00 1 C 63.24 5.978 6.922 14.769 A O4' C 1 ATOM A O4' C 1 1 1.00 1 O 59.61 5.270 6.932 12.533 A C3' C 1 ATOM A C3' C 1 1 1.00 1 C 55.75 5.772 6.977 11.230 A O3' C 1 ATOM A O3' C 1 1 1.00 1 O 60.60 5.174 5.502 13.048 A C2' C 1 ATOM A C2' C 1 1 1.00 1 C 61.45 6.295 4.705 12.668 A O2' C 1 ATOM A O2' C 1 1 1.00 1 O 59.75 5.219 5.737 14.557 A C1' C 1 ATOM A C1' C 1 1 1.00 1 C 56.14 3.886 5.977 15.140 A N1 C 1 ATOM A N1 C 1 1 1.00 1 N 54.98 2.985 4.918 15.278 A C2 C 1 ATOM A C2 C 1 1 1.00 1 C 53.34 3.323 3.772 14.899 A O2 C 1 ATOM A O2 C 1 1 1.00 1 O 53.39 1.772 5.167 15.829 A N3 C 1 ATOM A N3 C 1 1 1.00 1 N 54.90 1.461 6.404 16.236 A C4 C 1 ATOM A C4 C 1 1 1.00 1 C 56.07 0.270 6.610 16.788 A N4 C 1 ATOM A N4 C 1 1 1.00 1 N 55.18 2.357 7.486 16.098 A C5 C 1 ATOM A C5 C 1 1 1.00 1 C 55.50 3.541 7.234 15.548 A C6 C 1 ATOM A C6 C 1 1 1.00 1 C 56.02 4.833 7.499 10.049 A P C 2 ATOM A P C 1 2 1.00 1 P 57.13 5.734 7.847 8.909 A OP1 C 2 ATOM A OP1 C 1 2 1.00 1 O 49.30 3.899 8.537 10.603 A OP2 C 2 ATOM A OP2 C 1 2 1.00 1 O 57.78 3.990 6.197 9.659 A O5' C 2 ATOM A O5' C 1 2 1.00 1 O 51.64 4.631 4.946 9.308 A C5' C 2 ATOM A C5' C 1 2 1.00 1 C 51.03 3.594 3.843 9.216 A C4' C 2 ATOM A C4' C 1 2 1.00 1 C 49.72 3.191 3.418 10.550 A O4' C 2 ATOM A O4' C 1 2 1.00 1 O 49.54 2.286 4.220 8.532 A C3' C 2 ATOM A C3' C 1 2 1.00 1 C 52.85 2.356 4.211 7.098 A O3' C 2 ATOM A O3' C 1 2 1.00 1 O 48.84 1.317 3.193 9.111 A C2' C 2 ATOM A C2' C 1 2 1.00 1 C 47.19 1.400 1.925 8.479 A O2' C 2 ATOM A O2' C 1 2 1.00 1 O 48.37 1.813 3.083 10.555 A C1' C 2 ATOM A C1' C 1 2 1.00 1 C 46.30 1.105 4.034 11.441 A N1 C 2 ATOM A N1 C 1 2 1.00 1 N 45.82 -0.197 3.719 11.884 A C2 C 2 ATOM A C2 C 1 2 1.00 1 C 44.78 -0.681 2.623 11.608 A O2 C 2 ATOM A O2 C 1 2 1.00 1 O 44.78 -0.884 4.621 12.606 A N3 C 2 ATOM A N3 C 1 2 1.00 1 N 44.78 -0.331 5.796 12.905 A C4 C 2 ATOM A C4 C 1 2 1.00 1 C 45.59 -1.078 6.672 13.568 A N4 C 2 ATOM A N4 C 1 2 1.00 1 N 44.68 1.005 6.125 12.521 A C5 C 2 ATOM A C5 C 1 2 1.00 1 C 44.34 1.682 5.220 11.801 A C6 C 2 ATOM A C6 C 1 2 1.00 1 C 52.98 1.455 5.255 6.244 A P C 3 ATOM A P C 1 3 1.00 1 P 56.94 1.833 5.170 4.810 A OP1 C 3 ATOM A OP1 C 1 3 1.00 1 O 57.12 1.448 6.582 6.916 A OP2 C 3 ATOM A OP2 C 1 3 1.00 1 O 49.61 -0.019 4.658 6.351 A O5' C 3 ATOM A O5' C 1 3 1.00 1 O 40.71 -0.316 3.391 5.788 A C5' C 3 ATOM A C5' C 1 3 1.00 1 C 38.49 -1.738 3.044 6.059 A C4' C 3 ATOM A C4' C 1 3 1.00 1 C 37.45 -1.915 2.895 7.479 A O4' C 3 ATOM A O4' C 1 3 1.00 1 O 38.93 -2.768 4.094 5.707 A C3' C 3 ATOM A C3' C 1 3 1.00 1 C 45.48 -3.117 4.117 4.342 A O3' C 3 ATOM A O3' C 1 3 1.00 1 O 38.54 -3.943 3.647 6.546 A C2' C 3 ATOM A C2' C 1 3 1.00 1 C 38.45 -4.568 2.505 5.986 A O2' C 3 ATOM A O2' C 1 3 1.00 1 O 36.59 -3.239 3.248 7.829 A C1' C 3 ATOM A C1' C 1 3 1.00 1 C 36.34 -3.210 4.373 8.777 A N1 C 3 ATOM A N1 C 1 3 1.00 1 N 36.71 -4.353 4.634 9.545 A C2 C 3 ATOM A C2 C 1 3 1.00 1 C 39.00 -5.338 3.889 9.434 A O2 C 3 ATOM A O2 C 1 3 1.00 1 O 36.65 -4.357 5.679 10.388 A N3 C 3 ATOM A N3 C 1 3 1.00 1 N 36.96 -3.279 6.446 10.494 A C4 C 3 ATOM A C4 C 1 3 1.00 1 C 39.81 -3.340 7.482 11.322 A N4 C 3 ATOM A N4 C 1 3 1.00 1 N 36.90 -2.096 6.191 9.754 A C5 C 3 ATOM A C5 C 1 3 1.00 1 C 36.71 -2.104 5.156 8.910 A C6 C 3 ATOM A C6 C 1 3 1.00 1 C 45.49 -3.671 5.481 3.700 A P PYY 4 HETATM A P PYY 1 4 1.00 1 P 49.15 -3.524 5.383 2.223 A O1P PYY 4 HETATM A O1P PYY 1 4 1.00 1 O 50.49 -3.023 6.608 4.435 A O2P PYY 4 HETATM A O2P PYY 1 4 1.00 1 O 53.56 -5.230 5.499 4.067 A O5' PYY 4 HETATM A O5' PYY 1 4 1.00 1 O 53.22 -6.121 4.485 3.561 A C5' PYY 4 HETATM A C5' PYY 1 4 1.00 1 C 54.20 -7.311 4.262 4.491 A C4' PYY 4 HETATM A C4' PYY 1 4 1.00 1 C 51.81 -6.912 4.203 5.889 A O4' PYY 4 HETATM A O4' PYY 1 4 1.00 1 O 51.85 -7.988 4.635 6.710 A C1' PYY 4 HETATM A C1' PYY 1 4 1.00 1 C 50.11 -7.675 5.893 7.477 A C1 PYY 4 HETATM A C1 PYY 1 4 1.00 1 C 49.00 -6.465 6.548 7.289 A C6 PYY 4 HETATM A C6 PYY 1 4 1.00 1 C 49.24 -8.597 6.408 8.375 A C2 PYY 4 HETATM A C2 PYY 1 4 1.00 1 C 49.22 -8.313 7.569 9.091 A C3 PYY 4 HETATM A C3 PYY 1 4 1.00 1 C 48.12 -7.104 8.210 8.902 A C4 PYY 4 HETATM A C4 PYY 1 4 1.00 1 C 48.56 -6.173 7.691 7.988 A C5 PYY 4 HETATM A C5 PYY 1 4 1.00 1 C 55.15 -9.162 4.943 5.792 A C2' PYY 4 HETATM A C2' PYY 1 4 1.00 1 C 56.55 -10.017 3.809 5.698 A O2' PYY 4 HETATM A O2' PYY 1 4 1.00 1 O 53.69 -8.439 5.274 4.492 A C3' PYY 4 HETATM A C3' PYY 1 4 1.00 1 C 53.85 -9.297 5.121 3.387 A O3' PYY 4 HETATM A O3' PYY 1 4 1.00 1 O 57.14 -9.777 6.428 2.593 A P G 5 ATOM A P G 1 5 1.00 1 P 57.88 -10.201 5.968 1.215 A OP1 G 5 ATOM A OP1 G 1 5 1.00 1 O 60.85 -8.653 7.416 2.735 A OP2 G 5 ATOM A OP2 G 1 5 1.00 1 O 51.82 -11.016 6.980 3.451 A O5' G 5 ATOM A O5' G 1 5 1.00 1 O 46.08 -12.128 6.130 3.792 A C5' G 5 ATOM A C5' G 1 5 1.00 1 C 45.75 -12.887 6.686 4.976 A C4' G 5 ATOM A C4' G 1 5 1.00 1 C 46.49 -12.073 6.633 6.183 A O4' G 5 ATOM A O4' G 1 5 1.00 1 O 46.21 -13.322 8.137 4.897 A C3' G 5 ATOM A C3' G 1 5 1.00 1 C 44.81 -14.492 8.356 4.126 A O3' G 5 ATOM A O3' G 1 5 1.00 1 O 47.79 -13.554 8.462 6.362 A C2' G 5 ATOM A C2' G 1 5 1.00 1 C 53.78 -14.788 7.938 6.820 A O2' G 5 ATOM A O2' G 1 5 1.00 1 O 45.03 -12.385 7.730 7.020 A C1' G 5 ATOM A C1' G 1 5 1.00 1 C 43.63 -11.243 8.639 7.035 A N9 G 5 ATOM A N9 G 1 5 1.00 1 N 42.87 -10.097 8.548 6.292 A C8 G 5 ATOM A C8 G 1 5 1.00 1 C 43.89 -9.288 9.557 6.474 A N7 G 5 ATOM A N7 G 1 5 1.00 1 N 41.93 -9.928 10.351 7.419 A C5 G 5 ATOM A C5 G 1 5 1.00 1 C 42.01 -9.526 11.577 8.023 A C6 G 5 ATOM A C6 G 1 5 1.00 1 C 43.17 -8.485 12.210 7.850 A O6 G 5 ATOM A O6 G 1 5 1.00 1 O 41.77 -10.487 12.057 8.913 A N1 G 5 ATOM A N1 G 1 5 1.00 1 N 44.52 -11.685 11.434 9.188 A C2 G 5 ATOM A C2 G 1 5 1.00 1 C 44.90 -12.516 12.051 10.056 A N2 G 5 ATOM A N2 G 1 5 1.00 1 N 45.17 -12.054 10.282 8.645 A N3 G 5 ATOM A N3 G 1 5 1.00 1 N 43.50 -11.133 9.802 7.776 A C4 G 5 ATOM A C4 G 1 5 1.00 1 C 43.54 -14.611 9.695 3.252 A P G 6 ATOM A P G 1 6 1.00 1 P 46.23 -15.737 9.500 2.334 A OP1 G 6 ATOM A OP1 G 1 6 1.00 1 O 41.89 -13.284 10.075 2.704 A OP2 G 6 ATOM A OP2 G 1 6 1.00 1 O 45.65 -15.026 10.795 4.327 A O5' G 6 ATOM A O5' G 1 6 1.00 1 O 44.31 -16.167 10.599 5.183 A C5' G 6 ATOM A C5' G 1 6 1.00 1 C 44.09 -16.313 11.764 6.127 A C4' G 6 ATOM A C4' G 1 6 1.00 1 C 46.93 -15.262 11.697 7.130 A O4' G 6 ATOM A O4' G 1 6 1.00 1 O 45.08 -16.133 13.148 5.515 A C3' G 6 ATOM A C3' G 1 6 1.00 1 C 46.88 -17.245 13.650 4.794 A O3' G 6 ATOM A O3' G 1 6 1.00 1 O 44.12 -15.748 13.981 6.728 A C2' G 6 ATOM A C2' G 1 6 1.00 1 C 43.50 -16.839 14.242 7.586 A O2' G 6 ATOM A O2' G 1 6 1.00 1 O 46.22 -14.813 13.014 7.440 A C1' G 6 ATOM A C1' G 1 6 1.00 1 C 44.01 -13.469 13.193 6.895 A N9 G 6 ATOM A N9 G 1 6 1.00 1 N 42.25 -12.797 12.374 6.015 A C8 G 6 ATOM A C8 G 1 6 1.00 1 C 41.96 -11.604 12.811 5.719 A N7 G 6 ATOM A N7 G 1 6 1.00 1 N 41.93 -11.482 13.986 6.450 A C5 G 6 ATOM A C5 G 1 6 1.00 1 C 43.08 -10.379 14.902 6.569 A C6 G 6 ATOM A C6 G 1 6 1.00 1 C 43.29 -9.253 14.857 6.022 A O6 G 6 ATOM A O6 G 1 6 1.00 1 O 43.28 -10.691 15.950 7.436 A N1 G 6 ATOM A N1 G 1 6 1.00 1 N 42.11 -11.891 16.095 8.103 A C2 G 6 ATOM A C2 G 1 6 1.00 1 C 40.42 -11.993 17.162 8.895 A N2 G 6 ATOM A N2 G 1 6 1.00 1 N 41.01 -12.908 15.257 7.998 A N3 G 6 ATOM A N3 G 1 6 1.00 1 N 41.01 -12.634 14.236 7.168 A C4 G 6 ATOM A C4 G 1 6 1.00 1 C 47.81 -16.988 14.516 3.453 A P G 7 ATOM A P G 1 7 1.00 1 P 51.55 -18.323 14.807 2.848 A OP1 G 7 ATOM A OP1 G 1 7 1.00 1 O 46.43 -15.922 13.888 2.631 A OP2 G 7 ATOM A OP2 G 1 7 1.00 1 O 42.77 -16.456 15.904 3.993 A O5' G 7 ATOM A O5' G 1 7 1.00 1 O 45.06 -17.257 16.615 4.917 A C5' G 7 ATOM A C5' G 1 7 1.00 1 C 42.60 -16.569 17.859 5.361 A C4' G 7 ATOM A C4' G 1 7 1.00 1 C 44.62 -15.462 17.525 6.232 A O4' G 7 ATOM A O4' G 1 7 1.00 1 O 43.89 -15.934 18.701 4.277 A C3' G 7 ATOM A C3' G 1 7 1.00 1 C 43.72 -16.850 19.496 3.550 A O3' G 7 ATOM A O3' G 1 7 1.00 1 O 43.51 -14.984 19.547 5.093 A C2' G 7 ATOM A C2' G 1 7 1.00 1 C 48.04 -15.725 20.573 5.719 A O2' G 7 ATOM A O2' G 1 7 1.00 1 O 44.16 -14.461 18.514 6.100 A C1' G 7 ATOM A C1' G 1 7 1.00 1 C 43.61 -13.258 17.900 5.536 A N9 G 7 ATOM A N9 G 1 7 1.00 1 N 42.37 -13.138 16.707 4.847 A C8 G 7 ATOM A C8 G 1 7 1.00 1 C 40.48 -11.955 16.540 4.319 A N7 G 7 ATOM A N7 G 1 7 1.00 1 N 41.51 -11.235 17.660 4.731 A C5 G 7 ATOM A C5 G 1 7 1.00 1 C 42.97 -9.897 18.048 4.467 A C6 G 7 ATOM A C6 G 1 7 1.00 1 C 44.03 -9.030 17.432 3.819 A O6 G 7 ATOM A O6 G 1 7 1.00 1 O 41.47 -9.597 19.288 5.053 A N1 G 7 ATOM A N1 G 1 7 1.00 1 N 38.58 -10.467 20.044 5.812 A C2 G 7 ATOM A C2 G 1 7 1.00 1 C 37.81 -10.019 21.206 6.269 A N2 G 7 ATOM A N2 G 1 7 1.00 1 N 39.67 -11.694 19.680 6.089 A N3 G 7 ATOM A N3 G 1 7 1.00 1 N 41.85 -12.018 18.490 5.510 A C4 G 7 ATOM A C4 G 1 7 1.00 1 C 41.27 -16.606 19.726 1.977 A P G 8 ATOM A P G 1 8 1.00 1 P 44.21 -17.781 20.462 1.442 A OP1 G 8 ATOM A OP1 G 1 8 1.00 1 O 40.48 -16.230 18.412 1.357 A OP2 G 8 ATOM A OP2 G 1 8 1.00 1 O 39.72 -15.369 20.734 1.966 A O5' G 8 ATOM A O5' G 1 8 1.00 1 O 36.09 -15.471 22.004 2.623 A C5' G 8 ATOM A C5' G 1 8 1.00 1 C 34.85 -14.145 22.711 2.605 A C4' G 8 ATOM A C4' G 1 8 1.00 1 C 38.24 -13.161 21.932 3.303 A O4' G 8 ATOM A O4' G 1 8 1.00 1 O 35.37 -13.501 22.960 1.261 A C3' G 8 ATOM A C3' G 1 8 1.00 1 C 42.35 -14.072 23.976 0.488 A O3' G 8 ATOM A O3' G 1 8 1.00 1 O 38.18 -12.054 23.207 1.631 A C2' G 8 ATOM A C2' G 1 8 1.00 1 C 44.18 -11.847 24.509 2.132 A O2' G 8 ATOM A O2' G 1 8 1.00 1 O 38.64 -11.879 22.227 2.782 A C1' G 8 ATOM A C1' G 1 8 1.00 1 C 40.36 -11.291 20.998 2.285 A N9 G 8 ATOM A N9 G 1 8 1.00 1 N 41.20 -11.937 19.826 1.989 A C8 G 8 ATOM A C8 G 1 8 1.00 1 C 41.98 -11.142 18.913 1.503 A N7 G 8 ATOM A N7 G 1 8 1.00 1 N 42.51 -9.890 19.518 1.493 A C5 G 8 ATOM A C5 G 1 8 1.00 1 C 43.12 -8.624 19.021 1.053 A C6 G 8 ATOM A C6 G 1 8 1.00 1 C 45.17 -8.359 17.907 0.567 A O6 G 8 ATOM A O6 G 1 8 1.00 1 O 42.76 -7.612 19.977 1.211 A N1 G 8 ATOM A N1 G 1 8 1.00 1 N 43.83 -7.795 21.252 1.713 A C2 G 8 ATOM A C2 G 1 8 1.00 1 C 45.82 -6.702 22.042 1.755 A N2 G 8 ATOM A N2 G 1 8 1.00 1 N 43.99 -8.971 21.723 2.131 A N3 G 8 ATOM A N3 G 1 8 1.00 1 N 42.72 -9.967 20.804 1.988 A C4 G 8 ATOM A C4 G 1 8 1.00 1 C 46.13 -13.443 26.117 0.976 A CA CA 9 HETATM B CA CA 2 1.00 1 CA 46.62 -19.558 21.054 -0.004 A CA CA 14 HETATM C CA CA 2 0.50 1 CA 45.61 -11.668 25.589 -0.581 A O HOH 10 HETATM D O HOH 3 1.00 1 O 54.06 -13.404 28.332 0.249 A O HOH 11 HETATM D O HOH 3 1.00 1 O 51.95 -11.810 27.323 2.590 A O HOH 12 HETATM D O HOH 3 1.00 1 O 44.14 -14.796 26.371 -1.066 A O HOH 13 HETATM D O HOH 3 1.00 1 O 59.55 -21.356 20.187 1.743 A O HOH 15 HETATM D O HOH 3 1.00 1 O 53.76 -19.660 18.967 -0.897 A O HOH 16 HETATM D O HOH 3 1.00 1 O 50.90 -4.343 19.471 1.011 A O HOH 17 HETATM D O HOH 3 1.00 1 O 57.26 -15.537 16.491 9.776 A O HOH 18 HETATM D O HOH 3 1.00 1 O 47.65 -12.928 12.823 1.938 A O HOH 19 HETATM D O HOH 3 1.00 1 O 53.93 7.401 5.857 10.055 A O HOH 20 HETATM D O HOH 3 1.00 1 O 60.11 4.017 3.684 4.718 A O HOH 21 HETATM D O HOH 3 1.00 1 O 43.99 -9.324 24.329 2.654 A O HOH 22 HETATM D O HOH 3 1.00 1 O 55.17 -12.993 7.945 10.792 A O HOH 23 HETATM D O HOH 3 1.00 1 O 51.11 -0.224 -0.433 11.462 A O HOH 24 HETATM D O HOH 3 1.00 1 O 36.92 -17.699 17.195 -0.456 A O HOH 25 HETATM D O HOH 3 1.00 1 O 38.48 -8.676 13.405 1.967 A O HOH 26 HETATM A D O HOH 3 0.65 1 O 33.59 -8.750 14.957 3.122 A O HOH 26 HETATM B D O HOH 3 0.35 1 O 65.02 -3.500 11.632 12.211 A O HOH 27 HETATM D O HOH 3 0.50 1 O 39.93 -6.156 15.349 0.065 A O HOH 28 HETATM A D O HOH 3 0.50 1 O 47.29 -4.008 14.403 -0.475 A O HOH 28 HETATM B D O HOH 3 0.50 1 O 33.60 -20.594 18.483 3.220 A O HOH 29 HETATM D O HOH 3 0.50 1 O 37.00 -1.002 11.261 9.103 A O HOH 30 HETATM D O HOH 3 0.50 1 O 50.24 -1.503 10.120 13.655 A O HOH 31 HETATM A D O HOH 3 0.50 1 O 36.56 -1.332 9.600 11.439 A O HOH 31 HETATM B D O HOH 3 0.50 1 O 40.84 -6.144 8.731 1.064 A O HOH 32 HETATM D O HOH 3 0.50 1 O 74.29 -11.359 7.709 -1.388 A O HOH 33 HETATM D O HOH 3 0.50 1 O 42.97 -16.776 16.026 12.140 A O HOH 34 HETATM D O HOH 3 0.50 1 O 41.46 -19.856 15.567 0.841 A O HOH 35 HETATM D O HOH 3 0.50 1 O 38.55 -6.844 24.826 2.542 A O HOH 36 HETATM D O HOH 3 0.50 1 O 38.41 5.608 10.864 17.226 A O HOH 37 HETATM A D O HOH 3 0.50 1 O 35.19 5.348 9.268 18.259 A O HOH 37 HETATM B D O HOH 3 0.50 1 O 45.87 -18.709 21.356 6.880 A O HOH 38 HETATM D O HOH 3 0.50 1 O 19.89 3.639 6.326 3.248 A O HOH 39 HETATM A D O HOH 3 0.30 1 O 39.99 5.204 6.884 4.503 A O HOH 39 HETATM B D O HOH 3 0.30 1 O 28.55 3.554 5.911 1.496 A O HOH 39 HETATM C D O HOH 3 0.40 1 O 44.43 -3.461 8.494 8.387 A O HOH 40 HETATM D O HOH 3 0.50 1 O 40.49 -17.262 12.727 11.455 A O HOH 41 HETATM D O HOH 3 0.50 1 O 34.63 -11.324 14.619 2.309 A O HOH 42 HETATM D O HOH 3 0.50 1 O 34.10 -1.206 8.395 6.755 A O HOH 43 HETATM D O HOH 3 0.50 1 O 43.47 4.221 9.336 6.352 A O HOH 44 HETATM D O HOH 3 0.50 1 O 30.91 -19.054 22.290 3.712 A O HOH 45 HETATM A D O HOH 3 0.40 1 O 37.82 -20.142 21.560 5.057 A O HOH 45 HETATM B D O HOH 3 0.60 1 O 25.47 -12.170 4.302 8.064 A O HOH 46 HETATM A D O HOH 3 0.50 1 O 45.54 -14.604 10.082 10.606 A O HOH 46 HETATM B D O HOH 3 0.50 1 O 52.33 8.212 6.229 13.952 A O HOH 47 HETATM D O HOH 3 0.50 1 O 0.041135 0.023749 0.000000 0.000000 0.047499 0.000000 0.000000 0.000000 0.008078 0.00000 0.00000 0.00000 Minasov, G. Matulic-Adamic, J. Wilds, C.J. Haeberli, P. Usman, N. Beigelman, L. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 24.310 24.310 123.790 C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C11 H15 O7 P 290.206 D-RIBOFURANOSYL-BENZENE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N CA N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 R C N 48 N O N 49 R C Y 50 N N Y 51 N C Y 52 N N Y 53 N C N 54 N C N 55 N O N 56 N N N 57 N C N 58 N N N 59 N N Y 60 N C N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N O N 76 N H N 77 N H N 78 N P N 79 N O N 80 N O N 81 N O N 82 N C N 83 R C N 84 N O N 85 S C Y 86 N C Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C N 92 R C N 93 N O N 94 S C N 95 N O N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing Y 61 N sing Y 62 N sing Y 63 N doub N 64 N sing Y 65 N sing N 66 N sing Y 67 N doub N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing Y 95 N doub Y 96 N sing Y 97 N sing N 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing UK RNA RNARFU 2122 1355-8382 6 1516 1528 10.1017/S1355838200001114 11105752 Crystal structure of an RNA duplex containing phenyl-ribonucleotides, hydrophobic isosteres of the natural pyrimidines. 2000 10.2210/pdb1g2j/pdb pdb_00001g2j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-03-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 5ID-B APS 1.0000 SYNCHROTRON APS BEAMLINE 5ID-B 2523.602 5'-R(*CP*CP*CP*(PYY)P*GP*GP*GP*G)-3' 1 syn polymer 40.078 CALCIUM ION 2 syn non-polymer 18.015 water 37 nat water no yes CCC(PYY)GGGG CCCNGGGG A polyribonucleotide n n n n n n n n 1 2.09 41.21 VAPOR DIFFUSION, HANGING DROP 6.5 Oligonucleotide, Calcium Acetate, Sodium Cacodylate, PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K 277.0 Oligonucleotide 1 Calcium Acetate 1 Sodium Cacodylate 1 PEG 8000 1 15.048 1 19 A 1 A 7 -3.413 A_C1:G7_A 1 -11.386 0.210 -0.295 -0.150 4.968 1 19 A 2 A 6 5.896 A_C2:G6_A 2 -10.992 0.304 0.050 0.015 4.991 1 19 A 3 A 5 -1.767 A_C3:G5_A 3 -5.811 0.517 0.073 -0.187 15.048 1 19 A 1 A 7 -3.413 A_C1:G7_A 4 -11.386 0.210 -0.295 -0.150 4.968 1 19 A 2 A 6 5.896 A_C2:G6_A 5 -10.992 0.304 0.050 0.015 4.991 1 19 A 3 A 5 -1.767 A_C3:G5_A 6 -5.811 0.517 0.073 -0.187 2.870 33.758 A A 1 2 14.920 A A 7 6 3.483 8.564 -0.039 -2.010 AA_C1C2:G6G7_AA 1 -2.938 5.118 32.555 -4.835 -0.404 2.629 33.750 A A 2 3 14.565 A A 6 5 3.234 8.372 -0.291 -2.083 AA_C2C3:G5G6_AA 2 0.738 -1.285 32.716 -4.824 0.610 2.870 33.758 A A 1 2 14.920 A A 7 6 3.483 8.564 -0.039 -2.010 AA_C1C2:G6G7_AA 3 -2.938 5.118 32.555 -4.835 -0.404 2.629 33.750 A A 2 3 14.565 A A 6 5 3.234 8.372 -0.291 -2.083 AA_C2C3:G5G6_AA 4 0.738 -1.285 32.716 -4.824 0.610 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2000-12-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y NDB 2000-10-20 REL REL CA CALCIUM ION HOH water RNA tetramer duplex Other in silico model CA 9 2 CA CA 9 A CA 14 2 CA CA 14 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A C 1 n 1 C 1 A C 2 n 2 C 2 A C 3 n 3 C 3 A PYL 4 n 4 PYY 4 A G 5 n 5 G 5 A G 6 n 6 G 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A author_defined_assembly 2 dimeric A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A G 8 A O3' G 8 1_555 88.9 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A G 8 A O2' G 8 1_555 113.7 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 A G 8 A O2' G 8 1_555 71.2 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A HOH 10 D O HOH 1_555 166.9 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 10 D O HOH 1_555 82.0 A G 8 A O2' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 10 D O HOH 1_555 72.2 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A HOH 11 D O HOH 1_555 92.7 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 11 D O HOH 1_555 145.9 A G 8 A O2' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 11 D O HOH 1_555 137.0 A HOH 10 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 11 D O HOH 1_555 89.7 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 100.8 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 137.9 A G 8 A O2' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 67.4 A HOH 10 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 92.3 A HOH 11 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 75.0 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 84.9 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 76.6 A G 8 A O2' G 8 1_555 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 141.9 A HOH 10 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 83.8 A HOH 11 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 69.7 A HOH 12 D O HOH 1_555 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 144.5 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 A G 8 A OP1 G 8 8_675 82.5 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 1_555 91.4 A G 8 A OP1 G 8 8_675 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 1_555 173.2 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 8_675 173.4 A G 8 A OP1 G 8 8_675 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 8_675 91.7 A HOH 15 D O HOH 1_555 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 8_675 94.5 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 1_555 92.5 A G 8 A OP1 G 8 8_675 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 1_555 91.4 A HOH 15 D O HOH 1_555 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 1_555 85.9 A HOH 15 D O HOH 8_675 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 1_555 90.7 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 91.2 A G 8 A OP1 G 8 8_675 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 92.6 A HOH 15 D O HOH 1_555 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 90.5 A HOH 15 D O HOH 8_675 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 86.0 A HOH 16 D O HOH 1_555 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 174.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_565 x,x-y+1,-z+1/6 crystal symmetry operation -12.1550000000 21.0530775660 20.6316666667 1 A CA 14 C CA 1 A G 7 0.051 SIDE CHAIN -17.632 -3.890 0.000 -17.632 0.000 35.264 Used residual target 0.2690000 0.2170000 1.97 20.0 185 1736 1736 95.3 random 1 Isotropic THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT RNA tetramer duplex G. Parkinson, J. Vojtechovsky, L. Clowney, A.T. Brunger, H.M. Berman, Acta Cryst. D, 52, 57-64 (1996). 1.97 20.0 45 214 2 167 0 0.009 1.40 29.47 1.94 1.97 20.0 1G2J 1904 1904 0.0 -3.0 0.0460000 1 20.5 13.6 99.1 0.2430000 1.97 2.04 17.3 186 11.5 99.5 phasing AMoRE refinement CNS 0.9 data reduction DENZO data scaling SCALEPACK RNA OCTAMER R(CCCP*GGGG) CONTAINING PHENYL RIBONUCLEOTIDE 1 N N 2 N N 2 N N 3 N N covale 1.606 both A C 3 A O3' C 3 1_555 A PYY 4 A P PYY 4 1_555 covale 1.603 both A PYY 4 A O3' PYY 4 1_555 A G 5 A P G 5 1_555 metalc 2.580 A PYY 4 A O1P PYY 4 1_565 A CA 9 B CA CA 1_555 metalc 2.284 A G 8 A O3' G 8 1_555 A CA 9 B CA CA 1_555 metalc 2.543 A G 8 A O2' G 8 1_555 A CA 9 B CA CA 1_555 metalc 2.366 A G 8 A OP1 G 8 1_555 A CA 14 C CA CA 1_555 metalc 2.361 A G 8 A OP1 G 8 8_675 A CA 14 C CA CA 1_555 metalc 2.419 A CA 9 B CA CA 1_555 A HOH 10 D O HOH 1_555 metalc 2.332 A CA 9 B CA CA 1_555 A HOH 11 D O HOH 1_555 metalc 2.593 A CA 9 B CA CA 1_555 A HOH 12 D O HOH 1_555 metalc 2.463 A CA 9 B CA CA 1_555 A HOH 13 D O HOH 1_555 metalc 2.653 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 1_555 metalc 2.647 A CA 14 C CA CA 1_555 A HOH 15 D O HOH 8_675 metalc 2.272 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 1_555 metalc 2.274 A CA 14 C CA CA 1_555 A HOH 16 D O HOH 8_675 hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 A G 7 A N1 G 7 12_565 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 A G 7 A O6 G 7 12_565 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 A G 7 A N2 G 7 12_565 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 6 A N1 G 6 12_565 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 6 A O6 G 6 12_565 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 6 A N2 G 6 12_565 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 5 A N1 G 5 12_565 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 5 A O6 G 5 12_565 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 5 A N2 G 5 12_565 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 3 A N3 C 3 12_565 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 3 A O2 C 3 12_565 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 3 A N4 C 3 12_565 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 2 A N3 C 2 12_565 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 2 A O2 C 2 12_565 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 2 A N4 C 2 12_565 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 1 A N3 C 1 12_565 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 1 A O2 C 1 12_565 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 1 A N4 C 1 12_565 RNA RNA duplex, phenyl-ribonucleotide, RNA 1G2J PDB 1 1G2J 1 8 1G2J 1 8 1G2J A 1 1 8 BINDING SITE FOR RESIDUE CA A 9 A CA 9 Software 6 BINDING SITE FOR RESIDUE CA A 14 A CA 14 Software 6 A PYY 4 A PYY 4 6 1_565 A G 8 A G 8 6 1_555 A HOH 10 D HOH 6 1_555 A HOH 11 D HOH 6 1_555 A HOH 12 D HOH 6 1_555 A HOH 13 D HOH 6 1_555 A G 8 A G 8 6 1_555 A G 8 A G 8 6 8_675 A HOH 15 D HOH 6 8_675 A HOH 15 D HOH 6 1_555 A HOH 16 D HOH 6 8_675 A HOH 16 D HOH 6 1_555 178 P 61 2 2