0.013996 0.000000 0.002647 0.000000 0.013883 0.000000 0.000000 0.000000 0.013913 0.00000 0.00000 0.00000 Bachand, B. Tarazi, M. St-Denis, Y. Edmunds, J.J. Winocour, P.D. Leblond, L. Siddiqui, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.71 90.00 71.45 72.03 73.15 C28 H38 N4 O7 S 574.689 3-(4-AMINO-CYCLOHEXYL)-2-HYDROXY-3-[(4-OXO-2-PHENYLMETHANESULFONYL-1,2,3,4-TETRAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBONYL)-AMINO]-PROPIONIC ACID BUTYL ESTER BCH-10556 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N O N 4 N C N 5 N C N 6 N C N 7 N O N 8 N C N 9 N O Y 10 N C Y 11 N C Y 12 N N Y 13 N C Y 14 N C N 15 N C N 16 N C N 17 N S N 18 N O N 19 N O Y 20 N C Y 21 N C N 22 N C Y 23 N C Y 24 N C Y 25 N C Y 26 N C N 27 N O N 28 N C N 29 N N N 30 N C N 31 N C N 32 N C N 33 N C N 34 N C N 35 N C N 36 N N N 37 N C N 38 N C N 39 S C N 40 N O N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N N N 93 S C N 94 N C N 95 N O N 96 N C N 97 N C N 98 N C N 99 N N N 100 N C N 101 N N N 102 N N N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N O N 126 N N N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N O N 143 N O N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 R C N 154 N C N 155 N O N 156 N C N 157 N S N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N N N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 N C N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C Y 220 N C Y 221 N N Y 222 N C Y 223 N C Y 224 N N N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N O N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 S C N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N N N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N S N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 R C N 387 N O N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N N Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N doub N 18 N sing Y 19 N doub Y 20 N sing N 21 N sing Y 22 N sing N 23 N sing Y 24 N sing N 25 N sing Y 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N doub N 34 N doub N 35 N sing N 36 N sing Y 37 N doub Y 38 N sing N 39 N sing N 40 N sing Y 41 N sing N 42 N sing N 43 N sing Y 44 N doub N 45 N sing Y 46 N sing N 47 N sing Y 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing Y 221 N sing Y 222 N doub Y 223 N doub N 224 N sing Y 225 N sing N 226 N sing Y 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N sing Y 335 N doub N 336 N sing Y 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing Y 426 N doub Y 427 N sing Y 428 N sing N 429 N sing Y 430 N doub N 431 N sing Y 432 N doub N 433 N sing Y 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 11 287 290 10.1016/S0960-894X(00)00636-3 11212093 Potent and selective bicyclic lactam inhibitors of thrombin. Part 4: transition state inhibitors. 2001 10.2210/pdb1g37/pdb pdb_00001g37 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 296.0 1 monochromator IMAGE PLATE 1997-04-02 RIGAKU RAXIS IIC graphite M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 33093.992 ALPHA THROMBIN 3.4.21.5 1 nat polymer 1052.176 THROMBIN NONAPEPTIDE INHIBITOR 1 syn polymer 574.689 3-(4-AMINO-CYCLOHEXYL)-2-HYDROXY-3-[(4-OXO-2-PHENYLMETHANESULFONYL-1,2,3,4-TETRAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBONYL)-AMINO]-PROPIONIC ACID BUTYL ESTER 1 syn non-polymer 18.015 water 81 nat water COAGULATION FACTOR II E.C.3.4.21.5 no no ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF A polypeptide(L) no no FEAIPAEYL FEAIPAEYL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human THROMBIN PURCHASED FROM HAEMATOLOGIC TECHNOLOGIES Homo sample 9606 Homo sapiens BLOOD 1 2.71 54.56 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 8000, sodium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP at 296K, temperature 296.0K 296.0 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-10-23 REL 110 3-(4-AMINO-CYCLOHEXYL)-2-HYDROXY-3-[(4-OXO-2-PHENYLMETHANESULFONYL-1,2,3,4-TETRAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBONYL)-AMINO]-PROPIONIC ACID BUTYL ESTER HOH water 1IHS PDB entry 1IHS PDB experimental model 110 900 3 110 110 900 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 434 4 HOH HOH 434 A HOH 435 4 HOH HOH 435 A HOH 436 4 HOH HOH 436 A HOH 437 4 HOH HOH 437 A HOH 438 4 HOH HOH 438 A HOH 439 4 HOH HOH 439 A HOH 440 4 HOH HOH 440 A HOH 441 4 HOH HOH 441 A HOH 442 4 HOH HOH 442 A HOH 443 4 HOH HOH 443 A HOH 444 4 HOH HOH 444 A HOH 445 4 HOH HOH 445 A HOH 446 4 HOH HOH 446 A HOH 447 4 HOH HOH 447 A HOH 448 4 HOH HOH 448 A HOH 449 4 HOH HOH 449 A HOH 450 4 HOH HOH 450 A HOH 451 4 HOH HOH 451 A HOH 452 4 HOH HOH 452 A HOH 453 4 HOH HOH 453 A HOH 454 4 HOH HOH 454 A HOH 455 4 HOH HOH 455 A HOH 456 4 HOH HOH 456 A HOH 457 4 HOH HOH 457 A HOH 458 4 HOH HOH 458 A HOH 459 4 HOH HOH 459 A HOH 460 4 HOH HOH 460 A HOH 461 4 HOH HOH 461 A HOH 462 4 HOH HOH 462 A HOH 463 4 HOH HOH 463 A HOH 464 4 HOH HOH 464 A HOH 465 4 HOH HOH 465 A HOH 466 4 HOH HOH 466 A HOH 467 4 HOH HOH 467 A HOH 468 4 HOH HOH 468 A HOH 469 4 HOH HOH 469 A HOH 470 4 HOH HOH 470 A HOH 471 4 HOH HOH 471 A HOH 472 4 HOH HOH 472 A HOH 473 4 HOH HOH 473 A HOH 474 4 HOH HOH 474 A HOH 475 4 HOH HOH 475 A HOH 476 4 HOH HOH 476 A HOH 477 4 HOH HOH 477 A HOH 478 4 HOH HOH 478 A HOH 479 4 HOH HOH 479 A HOH 480 4 HOH HOH 480 A HOH 481 4 HOH HOH 481 A HOH 482 4 HOH HOH 482 A ALA 1 n 1 B ALA 1 A ASP 1 n 2 A ASP 1 A CYS 1 n 3 CYS 1 A GLY 2 n 4 GLY 2 A LEU 3 n 5 LEU 3 A ARG 4 n 6 ARG 4 A PRO 5 n 7 PRO 5 A LEU 6 n 8 LEU 6 A PHE 7 n 9 PHE 7 A GLU 8 n 10 GLU 8 A LYS 9 n 11 LYS 9 A LYS 10 n 12 LYS 10 A SER 11 n 13 SER 11 A LEU 12 n 14 LEU 12 A GLU 13 n 15 GLU 13 A ASP 14 n 16 ASP 14 A LYS 14 n 17 A LYS 14 A THR 14 n 18 B THR 14 A GLU 14 n 19 C GLU 14 A ARG 14 n 20 D ARG 14 A GLU 14 n 21 E GLU 14 A LEU 14 n 22 F LEU 14 A LEU 14 n 23 G LEU 14 A GLU 14 n 24 H GLU 14 A SER 14 n 25 I SER 14 A TYR 14 n 26 J TYR 14 A ILE 14 n 27 K ILE 14 A n 28 L 14 A n 29 M 14 A n 30 15 A ILE 16 n 31 ILE 16 A VAL 17 n 32 VAL 17 A GLU 18 n 33 GLU 18 A GLY 19 n 34 GLY 19 A SER 20 n 35 SER 20 A ASP 21 n 36 ASP 21 A ALA 22 n 37 ALA 22 A GLU 23 n 38 GLU 23 A ILE 24 n 39 ILE 24 A GLY 25 n 40 GLY 25 A MET 26 n 41 MET 26 A SER 27 n 42 SER 27 A PRO 28 n 43 PRO 28 A TRP 29 n 44 TRP 29 A GLN 30 n 45 GLN 30 A VAL 31 n 46 VAL 31 A MET 32 n 47 MET 32 A LEU 33 n 48 LEU 33 A PHE 34 n 49 PHE 34 A ARG 35 n 50 ARG 35 A LYS 36 n 51 LYS 36 A SER 36 n 52 A SER 36 A PRO 37 n 53 PRO 37 A GLN 38 n 54 GLN 38 A GLU 39 n 55 GLU 39 A LEU 40 n 56 LEU 40 A LEU 41 n 57 LEU 41 A CYS 42 n 58 CYS 42 A GLY 43 n 59 GLY 43 A ALA 44 n 60 ALA 44 A SER 45 n 61 SER 45 A LEU 46 n 62 LEU 46 A ILE 47 n 63 ILE 47 A SER 48 n 64 SER 48 A ASP 49 n 65 ASP 49 A ARG 50 n 66 ARG 50 A TRP 51 n 67 TRP 51 A VAL 52 n 68 VAL 52 A LEU 53 n 69 LEU 53 A THR 54 n 70 THR 54 A ALA 55 n 71 ALA 55 A ALA 56 n 72 ALA 56 A HIS 57 n 73 HIS 57 A CYS 58 n 74 CYS 58 A LEU 59 n 75 LEU 59 A LEU 60 n 76 LEU 60 A TYR 60 n 77 A TYR 60 A PRO 60 n 78 B PRO 60 A PRO 60 n 79 C PRO 60 A TRP 60 n 80 D TRP 60 A ASP 60 n 81 E ASP 60 A LYS 60 n 82 F LYS 60 A ASN 60 n 83 G ASN 60 A PHE 60 n 84 H PHE 60 A THR 60 n 85 I THR 60 A GLU 61 n 86 GLU 61 A ASN 62 n 87 ASN 62 A ASP 63 n 88 ASP 63 A LEU 64 n 89 LEU 64 A LEU 65 n 90 LEU 65 A VAL 66 n 91 VAL 66 A ARG 67 n 92 ARG 67 A ILE 68 n 93 ILE 68 A GLY 69 n 94 GLY 69 A LYS 70 n 95 LYS 70 A HIS 71 n 96 HIS 71 A SER 72 n 97 SER 72 A ARG 73 n 98 ARG 73 A THR 74 n 99 THR 74 A ARG 75 n 100 ARG 75 A TYR 76 n 101 TYR 76 A GLU 77 n 102 GLU 77 A ARG 77 n 103 A ARG 77 A ASN 78 n 104 ASN 78 A ILE 79 n 105 ILE 79 A GLU 80 n 106 GLU 80 A LYS 81 n 107 LYS 81 A ILE 82 n 108 ILE 82 A SER 83 n 109 SER 83 A MET 84 n 110 MET 84 A LEU 85 n 111 LEU 85 A GLU 86 n 112 GLU 86 A LYS 87 n 113 LYS 87 A ILE 88 n 114 ILE 88 A TYR 89 n 115 TYR 89 A ILE 90 n 116 ILE 90 A HIS 91 n 117 HIS 91 A PRO 92 n 118 PRO 92 A ARG 93 n 119 ARG 93 A TYR 94 n 120 TYR 94 A ASN 95 n 121 ASN 95 A TRP 96 n 122 TRP 96 A ARG 97 n 123 ARG 97 A GLU 97 n 124 A GLU 97 A ASN 98 n 125 ASN 98 A LEU 99 n 126 LEU 99 A ASP 100 n 127 ASP 100 A ARG 101 n 128 ARG 101 A ASP 102 n 129 ASP 102 A ILE 103 n 130 ILE 103 A ALA 104 n 131 ALA 104 A LEU 105 n 132 LEU 105 A MET 106 n 133 MET 106 A LYS 107 n 134 LYS 107 A LEU 108 n 135 LEU 108 A LYS 109 n 136 LYS 109 A LYS 110 n 137 LYS 110 A PRO 111 n 138 PRO 111 A VAL 112 n 139 VAL 112 A ALA 113 n 140 ALA 113 A PHE 114 n 141 PHE 114 A SER 115 n 142 SER 115 A ASP 116 n 143 ASP 116 A TYR 117 n 144 TYR 117 A ILE 118 n 145 ILE 118 A HIS 119 n 146 HIS 119 A PRO 120 n 147 PRO 120 A VAL 121 n 148 VAL 121 A CYS 122 n 149 CYS 122 A LEU 123 n 150 LEU 123 A PRO 124 n 151 PRO 124 A ASP 125 n 152 ASP 125 A ARG 126 n 153 ARG 126 A GLU 127 n 154 GLU 127 A THR 128 n 155 THR 128 A ALA 129 n 156 ALA 129 A ALA 129 n 157 A ALA 129 A SER 129 n 158 B SER 129 A LEU 129 n 159 C LEU 129 A LEU 130 n 160 LEU 130 A GLN 131 n 161 GLN 131 A ALA 132 n 162 ALA 132 A GLY 133 n 163 GLY 133 A TYR 134 n 164 TYR 134 A LYS 135 n 165 LYS 135 A GLY 136 n 166 GLY 136 A ARG 137 n 167 ARG 137 A VAL 138 n 168 VAL 138 A THR 139 n 169 THR 139 A GLY 140 n 170 GLY 140 A TRP 141 n 171 TRP 141 A GLY 142 n 172 GLY 142 A ASN 143 n 173 ASN 143 A LEU 144 n 174 LEU 144 A LYS 145 n 175 LYS 145 A GLU 146 n 176 GLU 146 A THR 147 n 177 THR 147 A n 178 A 147 A n 179 B 147 A n 180 C 147 A n 181 D 147 A n 182 E 147 A n 183 F 147 A n 184 G 147 A GLY 150 n 185 GLY 150 A GLN 151 n 186 GLN 151 A PRO 152 n 187 PRO 152 A SER 153 n 188 SER 153 A VAL 154 n 189 VAL 154 A LEU 155 n 190 LEU 155 A GLN 156 n 191 GLN 156 A VAL 157 n 192 VAL 157 A VAL 158 n 193 VAL 158 A ASN 159 n 194 ASN 159 A LEU 160 n 195 LEU 160 A PRO 161 n 196 PRO 161 A ILE 162 n 197 ILE 162 A VAL 163 n 198 VAL 163 A GLU 164 n 199 GLU 164 A ARG 165 n 200 ARG 165 A PRO 166 n 201 PRO 166 A VAL 167 n 202 VAL 167 A CYS 168 n 203 CYS 168 A LYS 169 n 204 LYS 169 A ASP 170 n 205 ASP 170 A SER 171 n 206 SER 171 A THR 172 n 207 THR 172 A ARG 173 n 208 ARG 173 A ILE 174 n 209 ILE 174 A ARG 175 n 210 ARG 175 A ILE 176 n 211 ILE 176 A THR 177 n 212 THR 177 A ASP 178 n 213 ASP 178 A ASN 179 n 214 ASN 179 A MET 180 n 215 MET 180 A PHE 181 n 216 PHE 181 A CYS 182 n 217 CYS 182 A ALA 183 n 218 ALA 183 A GLY 184 n 219 GLY 184 A TYR 184 n 220 A TYR 184 A LYS 185 n 221 LYS 185 A PRO 186 n 222 PRO 186 A ASP 186 n 223 A ASP 186 A GLU 186 n 224 B GLU 186 A GLY 186 n 225 C GLY 186 A LYS 186 n 226 D LYS 186 A ARG 187 n 227 ARG 187 A GLY 188 n 228 GLY 188 A ASP 189 n 229 ASP 189 A ALA 190 n 230 ALA 190 A CYS 191 n 231 CYS 191 A GLU 192 n 232 GLU 192 A GLY 193 n 233 GLY 193 A ASP 194 n 234 ASP 194 A SER 195 n 235 SER 195 A GLY 196 n 236 GLY 196 A GLY 197 n 237 GLY 197 A PRO 198 n 238 PRO 198 A PHE 199 n 239 PHE 199 A VAL 200 n 240 VAL 200 A MET 201 n 241 MET 201 A LYS 202 n 242 LYS 202 A SER 203 n 243 SER 203 A PRO 204 n 244 PRO 204 A PHE 204 n 245 A PHE 204 A ASN 204 n 246 B ASN 204 A ASN 205 n 247 ASN 205 A ARG 206 n 248 ARG 206 A TRP 207 n 249 TRP 207 A TYR 208 n 250 TYR 208 A GLN 209 n 251 GLN 209 A MET 210 n 252 MET 210 A GLY 211 n 253 GLY 211 A ILE 212 n 254 ILE 212 A VAL 213 n 255 VAL 213 A SER 214 n 256 SER 214 A TRP 215 n 257 TRP 215 A GLY 216 n 258 GLY 216 A GLU 217 n 259 GLU 217 A GLY 219 n 260 GLY 219 A CYS 220 n 261 CYS 220 A ASP 221 n 262 ASP 221 A ARG 221 n 263 A ARG 221 A ASP 222 n 264 ASP 222 A GLY 223 n 265 GLY 223 A LYS 224 n 266 LYS 224 A TYR 225 n 267 TYR 225 A GLY 226 n 268 GLY 226 A PHE 227 n 269 PHE 227 A TYR 228 n 270 TYR 228 A THR 229 n 271 THR 229 A HIS 230 n 272 HIS 230 A VAL 231 n 273 VAL 231 A PHE 232 n 274 PHE 232 A ARG 233 n 275 ARG 233 A LEU 234 n 276 LEU 234 A LYS 235 n 277 LYS 235 A LYS 236 n 278 LYS 236 A TRP 237 n 279 TRP 237 A ILE 238 n 280 ILE 238 A GLN 239 n 281 GLN 239 A LYS 240 n 282 LYS 240 A VAL 241 n 283 VAL 241 A ILE 242 n 284 ILE 242 A ASP 243 n 285 ASP 243 A GLN 244 n 286 GLN 244 A PHE 245 n 287 PHE 245 A PHE 356 n 1 PHE 356 B GLU 357 n 2 GLU 357 B ALA 358 n 3 ALA 358 B ILE 359 n 4 ILE 359 B PRO 360 n 5 PRO 360 B ALA 361 n 6 ALA 361 B GLU 362 n 7 GLU 362 B TYR 363 n 8 TYR 363 B LEU 364 n 9 LEU 364 B author_and_software_defined_assembly PISA 2 dimeric 2090 -7 12520 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 20 A O SER 35 A N VAL 157 A N VAL 192 A O LEU 160 A O LEU 195 A N GLY 136 A N GLY 166 A N THR 139 A N THR 169 A O PRO 198 A O PRO 238 A O MET 201 A O MET 241 A N TYR 208 A N TYR 250 A O TRP 215 A O TRP 257 A N PHE 227 A N PHE 269 A N TYR 228 A N TYR 270 A O PHE 181 A O PHE 216 A N ARG 35 A N ARG 50 A O GLU 39 A O GLU 55 A O SER 45 A O SER 61 A N LEU 53 A N LEU 69 A N THR 54 A N THR 70 A O ALA 104 A O ALA 131 A O LYS 107 A O LYS 134 A N GLU 86 A N GLU 112 A N LEU 85 A N LEU 111 A O LEU 64 A O LEU 89 A O ARG 67 A O ARG 92 A N MET 32 A N MET 47 L 1 A ASP 14 A ASP 28 1 Y M 1 A GLY 14 A GLY 29 1 Y 1 A ARG 15 A ARG 30 1 Y A 1 A TRP 147 A TRP 178 1 Y B 1 A THR 147 A THR 179 1 Y C 1 A ALA 147 A ALA 180 1 Y D 1 A ASN 147 A ASN 181 1 Y E 1 A VAL 147 A VAL 182 1 Y F 1 A GLY 147 A GLY 183 1 Y G 1 A LYS 147 A LYS 184 1 Y 1 A A HD1 H HIS ARG 91 93 1.32 1 -3.50 0.50 120.30 116.80 A A A NE CZ NH1 ARG ARG ARG 137 137 137 N 1 3.18 0.50 120.30 123.48 A A A NE CZ NH2 ARG ARG ARG 137 137 137 N 1 A A HH21 HH21 ARG ARG 75 75 1.03 1_555 2_555 1 A PHE 7 -126.38 -82.30 A 1 A TYR 60 -153.48 80.73 G 1 A ASN 60 -159.68 83.19 1 A HIS 71 -128.53 -55.13 1 A SER 115 -161.48 -168.66 1 B GLU 362 -73.78 33.27 1 B TYR 363 -145.03 -30.37 0.248 0.198 0.21 0.21 2.0 8.0 2387 23917 23917 10 random 1 THROUGHOUT 2.0 1.0 Isomorphous with other thrombin complexes PDB entry 1IHS Engh & Huber 2.0 8.0 81 2444 40 0 2323 25.0 2.0 20.0 1G37 24483 24483 0 0 0.066 1 16.3 3.7 99.0 0.196 2.00 2.07 2197 1 2.8 90.2 data reduction DENZO data scaling SCALEPACK model building X-PLOR refinement X-PLOR 3.1 phasing X-PLOR CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN COMPLEXED WITH BCH-10556 AND EXOSITE-DIRECTED PEPTIDE 1 N N 2 N N 3 N N 4 N N The molecule acts as a monomer A PHE 7 A PHE 9 HELX_P A SER 11 A SER 13 5 1 5 A THR 14 A THR 18 HELX_P A TYR 14 A TYR 26 1 2 9 B J A ALA 55 A ALA 71 HELX_P A CYS 58 A CYS 74 5 3 4 A PRO 60 A PRO 78 HELX_P A ASP 60 A ASP 81 5 4 4 B E A THR 60 A THR 85 HELX_P A ASN 62 A ASN 87 5 5 3 I A ASP 125 A ASP 152 HELX_P A LEU 130 A LEU 160 1 6 9 A GLU 164 A GLU 199 HELX_P A ASP 170 A ASP 205 1 7 7 A LYS 185 A LYS 221 HELX_P A GLY 186 A GLY 225 5 8 5 C A LEU 234 A LEU 276 HELX_P A PHE 245 A PHE 287 1 9 12 disulf 2.002 A CYS 1 A SG CYS 3 1_555 A CYS 122 A SG CYS 149 1_555 disulf 2.044 A CYS 42 A SG CYS 58 1_555 A CYS 58 A SG CYS 74 1_555 disulf 2.005 A CYS 168 A SG CYS 203 1_555 A CYS 182 A SG CYS 217 1_555 disulf 2.047 A CYS 191 A SG CYS 231 1_555 A CYS 220 A SG CYS 261 1_555 covale 1.440 none A SER 195 A OG SER 235 1_555 A 110 900 C C3 110 1_555 HYDROLASE/HYDROLASE INHIBITOR protease, thrombin, inhibitor, blood clotting, HYDROLASE-HYDROLASE INHIBITOR complex A SER 36 A SER 52 A 1 A PRO 37 A PRO 53 -0.96 THRB_HUMAN UNP 1 334 P00734 ADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF 1G37 PDB 2 1G37 334 620 1G37 1 245 P00734 B A 1 1 287 356 364 1G37 356 364 1G37 B 2 1 9 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 20 A SER 35 A ASP 21 A ASP 36 A GLN 156 A GLN 191 A PRO 161 A PRO 196 A LYS 135 A LYS 165 A GLY 140 A GLY 170 A PRO 198 A PRO 238 A LYS 202 A LYS 242 A TRP 207 A TRP 249 A TRP 215 A TRP 257 A GLY 226 A GLY 268 A HIS 230 A HIS 272 A MET 180 A MET 215 A ALA 183 A ALA 218 A GLN 30 A GLN 45 A ARG 35 A ARG 50 A GLU 39 A GLU 55 A LEU 46 A LEU 62 A TRP 51 A TRP 67 A THR 54 A THR 70 A ALA 104 A ALA 131 A LEU 108 A LEU 135 A LYS 81 A LYS 107 A ILE 90 A ILE 116 A LEU 64 A LEU 89 A ILE 68 A ILE 93 A GLN 30 A GLN 45 A ARG 35 A ARG 50 BINDING SITE FOR RESIDUE 110 A 900 A 110 900 Software 21 BINDING SITE FOR CHAIN B OF THROMBIN NONAPEPTIDE INHIBITOR Software 9 A LEU 40 A LEU 56 21 1_555 A LEU 41 A LEU 57 21 1_555 A HIS 57 A HIS 73 21 1_555 A TYR 60 A TYR 77 A 21 1_555 A TRP 60 A TRP 80 D 21 1_555 A GLU 97 A GLU 124 A 21 1_555 A ASN 98 A ASN 125 21 1_555 A ILE 174 A ILE 209 21 1_555 A ASP 189 A ASP 229 21 1_555 A ALA 190 A ALA 230 21 1_555 A CYS 191 A CYS 231 21 1_555 A GLU 192 A GLU 232 21 1_555 A GLY 193 A GLY 233 21 1_555 A ASP 194 A ASP 234 21 1_555 A SER 195 A SER 235 21 1_555 A SER 214 A SER 256 21 1_555 A TRP 215 A TRP 257 21 1_555 A GLY 216 A GLY 258 21 1_555 A GLY 219 A GLY 260 21 1_555 A HOH 423 D HOH 21 1_555 A HOH 478 D HOH 21 1_555 A PHE 34 A PHE 49 9 1_555 A LYS 36 A LYS 51 9 1_555 A GLN 38 A GLN 54 9 1_555 A ARG 67 A ARG 92 9 1_555 A ARG 73 A ARG 98 9 1_555 A THR 74 A THR 99 9 1_555 A ARG 75 A ARG 100 9 1_555 A ARG 75 A ARG 100 9 2_555 A TYR 76 A TYR 101 9 1_555 5 monoclinic C 1 2 1