1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liu, Z. Sun, C. Olejniczak, E.T. Meadows, R.P. Betz, S.F. Oost, T. Herrmann, J. Wu, J.C. Fesik, S.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Nature NATUAS 0006 0028-0836 408 1004 1008 10.1038/35050006 11140637 Structural basis for binding of Smac/DIABLO to the XIAP BIR3 domain. 2000 10.2210/pdb1g3f/pdb pdb_00001g3f 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13424.951 INHIBITOR OF APOPTOSIS PROTEIN 3 RESIDUES 241-356 1 man polymer 943.074 SMAC 9 RESIDUE PEPTIDE 1 syn polymer 65.409 ZINC ION 1 syn non-polymer X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, XIAP no no MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ HAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ HAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT A polypeptide(L) no no AVPIAQKSE AVPIAQKSE B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PLASMID PET28B database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-01-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-10-24 REL ZN ZINC ION The 9 residue peptide was chemically synthesized. sample 1 3D_15N-separated_NOESY 7.2 1 atm 300 K simulated annealing minimized average structure 1 mM protein/peptide complex, 120 mM NaCl, 1mM DTT, 10mM phosphate 90% h20, 10% d20 brunger refinement CNX 2000 800 Bruker DRX ZN 999 3 ZN ZN 999 A MET 240 n 1 MET 240 A SER 241 n 2 SER 241 A ASP 242 n 3 ASP 242 A ALA 243 n 4 ALA 243 A VAL 244 n 5 VAL 244 A SER 245 n 6 SER 245 A SER 246 n 7 SER 246 A ASP 247 n 8 ASP 247 A ARG 248 n 9 ARG 248 A ASN 249 n 10 ASN 249 A PHE 250 n 11 PHE 250 A PRO 251 n 12 PRO 251 A ASN 252 n 13 ASN 252 A SER 253 n 14 SER 253 A THR 254 n 15 THR 254 A ASN 255 n 16 ASN 255 A LEU 256 n 17 LEU 256 A PRO 257 n 18 PRO 257 A ARG 258 n 19 ARG 258 A ASN 259 n 20 ASN 259 A PRO 260 n 21 PRO 260 A SER 261 n 22 SER 261 A MET 262 n 23 MET 262 A ALA 263 n 24 ALA 263 A ASP 264 n 25 ASP 264 A TYR 265 n 26 TYR 265 A GLU 266 n 27 GLU 266 A ALA 267 n 28 ALA 267 A ARG 268 n 29 ARG 268 A ILE 269 n 30 ILE 269 A PHE 270 n 31 PHE 270 A THR 271 n 32 THR 271 A PHE 272 n 33 PHE 272 A GLY 273 n 34 GLY 273 A THR 274 n 35 THR 274 A TRP 275 n 36 TRP 275 A ILE 276 n 37 ILE 276 A TYR 277 n 38 TYR 277 A SER 278 n 39 SER 278 A VAL 279 n 40 VAL 279 A ASN 280 n 41 ASN 280 A LYS 281 n 42 LYS 281 A GLU 282 n 43 GLU 282 A GLN 283 n 44 GLN 283 A LEU 284 n 45 LEU 284 A ALA 285 n 46 ALA 285 A ARG 286 n 47 ARG 286 A ALA 287 n 48 ALA 287 A GLY 288 n 49 GLY 288 A PHE 289 n 50 PHE 289 A TYR 290 n 51 TYR 290 A ALA 291 n 52 ALA 291 A LEU 292 n 53 LEU 292 A GLY 293 n 54 GLY 293 A GLU 294 n 55 GLU 294 A GLY 295 n 56 GLY 295 A ASP 296 n 57 ASP 296 A LYS 297 n 58 LYS 297 A VAL 298 n 59 VAL 298 A LYS 299 n 60 LYS 299 A CYS 300 n 61 CYS 300 A PHE 301 n 62 PHE 301 A HIS 302 n 63 HIS 302 A CYS 303 n 64 CYS 303 A GLY 304 n 65 GLY 304 A GLY 305 n 66 GLY 305 A GLY 306 n 67 GLY 306 A LEU 307 n 68 LEU 307 A THR 308 n 69 THR 308 A ASP 309 n 70 ASP 309 A TRP 310 n 71 TRP 310 A LYS 311 n 72 LYS 311 A PRO 312 n 73 PRO 312 A SER 313 n 74 SER 313 A GLU 314 n 75 GLU 314 A ASP 315 n 76 ASP 315 A PRO 316 n 77 PRO 316 A TRP 317 n 78 TRP 317 A GLU 318 n 79 GLU 318 A GLN 319 n 80 GLN 319 A HIS 320 n 81 HIS 320 A ALA 321 n 82 ALA 321 A LYS 322 n 83 LYS 322 A TRP 323 n 84 TRP 323 A TYR 324 n 85 TYR 324 A PRO 325 n 86 PRO 325 A GLY 326 n 87 GLY 326 A CYS 327 n 88 CYS 327 A LYS 328 n 89 LYS 328 A TYR 329 n 90 TYR 329 A LEU 330 n 91 LEU 330 A LEU 331 n 92 LEU 331 A GLU 332 n 93 GLU 332 A GLN 333 n 94 GLN 333 A LYS 334 n 95 LYS 334 A GLY 335 n 96 GLY 335 A GLN 336 n 97 GLN 336 A GLU 337 n 98 GLU 337 A TYR 338 n 99 TYR 338 A ILE 339 n 100 ILE 339 A ASN 340 n 101 ASN 340 A ASN 341 n 102 ASN 341 A ILE 342 n 103 ILE 342 A HIS 343 n 104 HIS 343 A LEU 344 n 105 LEU 344 A THR 345 n 106 THR 345 A HIS 346 n 107 HIS 346 A SER 347 n 108 SER 347 A LEU 348 n 109 LEU 348 A GLU 349 n 110 GLU 349 A GLU 350 n 111 GLU 350 A CYS 351 n 112 CYS 351 A LEU 352 n 113 LEU 352 A VAL 353 n 114 VAL 353 A ARG 354 n 115 ARG 354 A THR 355 n 116 THR 355 A THR 356 n 117 THR 356 A ALA 901 n 1 ALA 901 B VAL 902 n 2 VAL 902 B PRO 903 n 3 PRO 903 B ILE 904 n 4 ILE 904 B ALA 905 n 5 ALA 905 B GLN 906 n 6 GLN 906 B LYS 907 n 7 LYS 907 B SER 908 n 8 SER 908 B GLU 909 n 9 GLU 909 B author_defined_assembly 2 dimeric A CYS 300 A SG CYS 61 1_555 A ZN 999 C ZN ZN 1_555 A CYS 303 A SG CYS 64 1_555 107.5 A CYS 300 A SG CYS 61 1_555 A ZN 999 C ZN ZN 1_555 A HIS 320 A ND1 HIS 81 1_555 107.2 A CYS 303 A SG CYS 64 1_555 A ZN 999 C ZN ZN 1_555 A HIS 320 A ND1 HIS 81 1_555 113.1 A CYS 300 A SG CYS 61 1_555 A ZN 999 C ZN ZN 1_555 A CYS 327 A SG CYS 88 1_555 108.5 A CYS 303 A SG CYS 64 1_555 A ZN 999 C ZN ZN 1_555 A CYS 327 A SG CYS 88 1_555 108.6 A HIS 320 A ND1 HIS 81 1_555 A ZN 999 C ZN ZN 1_555 A CYS 327 A SG CYS 88 1_555 111.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 290 A N TYR 51 A O LYS 299 A O LYS 60 A O VAL 298 A O VAL 59 A N LEU 307 A N LEU 68 A O THR 308 A O THR 69 B N VAL 902 B N VAL 2 1 A SER 241 -69.59 99.10 1 A ASP 242 -108.37 -64.87 1 A ALA 243 72.46 176.01 1 A SER 246 -169.02 57.51 1 A ASP 247 -174.86 -74.85 1 A ASN 249 -65.40 -161.57 1 A PHE 250 -38.60 103.29 1 A PRO 251 -54.73 -70.53 1 A ASN 252 -47.94 -73.70 1 A SER 253 165.70 -30.29 1 A THR 254 -175.53 -36.24 1 A ASN 255 -39.88 150.20 1 A ARG 258 49.52 -176.98 1 A ASN 259 170.26 123.74 1 A SER 261 -35.89 -35.79 1 A ALA 263 -104.68 53.90 1 A ASP 264 -96.47 -98.85 1 A TYR 265 -48.35 -71.19 1 A ALA 267 -44.77 -71.40 1 A TRP 275 -41.02 154.51 1 A ILE 276 -178.69 127.52 1 A LEU 292 -104.67 40.46 1 A ASP 296 86.60 -72.45 1 A HIS 302 70.28 -62.31 1 A ASP 309 70.51 57.36 1 A TRP 310 -52.76 -178.20 1 A GLN 319 -67.11 -71.68 1 A PRO 325 -68.23 64.80 1 A LEU 344 168.46 -40.64 1 A LEU 348 61.19 -176.46 1 A GLU 349 66.06 99.28 1 A GLU 350 -119.55 -141.90 1 A CYS 351 84.11 -3.14 1 A VAL 353 69.65 -66.73 1 B ILE 904 -47.80 -80.38 1 B ALA 905 60.08 -82.89 1 B GLN 906 62.23 -82.61 1 B LYS 907 40.59 -90.66 minimized average NMR STRUCTURE OF A 9 RESIDUE PEPTIDE FROM SMAC/DIABLO COMPLEXED TO THE BIR3 DOMAIN OF XIAP 1 N N 2 N N 3 N N A ALA 243 A ALA 4 HELX_P A ASP 247 A ASP 8 5 1 5 A ASP 264 A ASP 25 HELX_P A GLY 273 A GLY 34 1 2 10 A ASN 280 A ASN 41 HELX_P A GLY 288 A GLY 49 1 3 9 A ASP 315 A ASP 76 HELX_P A TYR 324 A TYR 85 1 4 10 A CYS 327 A CYS 88 HELX_P A GLY 335 A GLY 96 1 5 9 A LYS 334 A LYS 95 HELX_P A HIS 343 A HIS 104 1 6 10 metalc 2.095 A CYS 300 A SG CYS 61 1_555 A ZN 999 C ZN ZN 1_555 metalc 2.105 A CYS 303 A SG CYS 64 1_555 A ZN 999 C ZN ZN 1_555 metalc 2.215 A HIS 320 A ND1 HIS 81 1_555 A ZN 999 C ZN ZN 1_555 metalc 2.105 A CYS 327 A SG CYS 88 1_555 A ZN 999 C ZN ZN 1_555 APOPTOSIS zinc finger, complex, peptide-protein, apoptosis, BIR BIRC4_HUMAN UNP 1 241 P98170 SDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQH AKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT DBLOH_HUMAN UNP 2 56 Q9NR28 AVPIAQKSE 241 356 1G3F 241 356 P98170 A 1 2 117 56 64 1G3F 901 909 Q9NR28 B 2 1 9 1 cloning artifact MET 240 1G3F A P98170 UNP 1 4 anti-parallel anti-parallel anti-parallel A PHE 289 A PHE 50 A ALA 291 A ALA 52 A VAL 298 A VAL 59 A CYS 300 A CYS 61 A GLY 306 A GLY 67 A THR 308 A THR 69 B VAL 902 B VAL 2 B PRO 903 B PRO 3 BINDING SITE FOR RESIDUE ZN A 999 A ZN 999 Software 4 A CYS 300 A CYS 61 4 1_555 A CYS 303 A CYS 64 4 1_555 A HIS 320 A HIS 81 4 1_555 A CYS 327 A CYS 88 4 1_555 1 P 1