0.010137
0.000000
0.000000
0.000000
0.010137
0.000000
0.000000
0.000000
0.010137
0.00000
0.00000
0.00000
Hayashi, I.
Oyama, T.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
90.00
98.644
98.644
98.644
C11 H18 N5 O12 P3
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
C
N
9
R
P
N
10
N
O
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
C
N
15
R
C
N
16
N
O
N
17
S
C
N
18
N
O
N
19
R
C
N
20
N
O
N
21
R
C
Y
22
N
N
Y
23
N
C
Y
24
N
N
Y
25
N
C
Y
26
N
C
N
27
N
N
Y
28
N
N
Y
29
N
C
Y
30
N
N
Y
31
N
C
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
20
1819
1828
10.1093/emboj/20.8.1819
11296216
Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus.
2001
10.2210/pdb1g3r/pdb
pdb_00001g3r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2000-09-16
MACSCIENCE
Ni MIRROR + Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
MACSCIENCE
AMPPCP-BOUND FORM
25335.346
CELL DIVISION INHIBITOR
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
1
syn
non-polymer
18.015
water
70
nat
water
MIND ATPASE
no
no
MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN
VYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKK
AGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAEEIEKLA
MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN
VYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKK
AGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAEEIEKLA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
Escherichia
Escherichia coli
sample
MIND
2261
Pyrococcus furiosus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET28A
1
3.16
61.02
VAPOR DIFFUSION, HANGING DROP
6.0
MPD, sodium cacodylate, MgCl2, pH 6.0. VAPOR DIFFUSION, HANGING DROP at 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-10-25
REL
MG
MAGNESIUM ION
ACP
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
HOH
water
MG
239
2
MG
MG
239
A
ACP
238
3
ACP
ACP
238
A
HOH
1
4
HOH
HOH
240
A
HOH
2
4
HOH
HOH
241
A
HOH
3
4
HOH
HOH
242
A
HOH
4
4
HOH
HOH
243
A
HOH
5
4
HOH
HOH
244
A
HOH
6
4
HOH
HOH
245
A
HOH
7
4
HOH
HOH
246
A
HOH
8
4
HOH
HOH
247
A
HOH
9
4
HOH
HOH
248
A
HOH
10
4
HOH
HOH
249
A
HOH
11
4
HOH
HOH
250
A
HOH
12
4
HOH
HOH
251
A
HOH
13
4
HOH
HOH
252
A
HOH
14
4
HOH
HOH
253
A
HOH
15
4
HOH
HOH
254
A
HOH
16
4
HOH
HOH
255
A
HOH
17
4
HOH
HOH
256
A
HOH
18
4
HOH
HOH
257
A
HOH
19
4
HOH
HOH
258
A
HOH
20
4
HOH
HOH
259
A
HOH
21
4
HOH
HOH
260
A
HOH
22
4
HOH
HOH
261
A
HOH
24
4
HOH
HOH
262
A
HOH
25
4
HOH
HOH
263
A
HOH
26
4
HOH
HOH
264
A
HOH
27
4
HOH
HOH
265
A
HOH
28
4
HOH
HOH
266
A
HOH
29
4
HOH
HOH
267
A
HOH
30
4
HOH
HOH
268
A
HOH
31
4
HOH
HOH
269
A
HOH
32
4
HOH
HOH
270
A
HOH
33
4
HOH
HOH
271
A
HOH
34
4
HOH
HOH
272
A
HOH
35
4
HOH
HOH
273
A
HOH
36
4
HOH
HOH
274
A
HOH
37
4
HOH
HOH
275
A
HOH
38
4
HOH
HOH
276
A
HOH
39
4
HOH
HOH
277
A
HOH
40
4
HOH
HOH
278
A
HOH
41
4
HOH
HOH
279
A
HOH
42
4
HOH
HOH
280
A
HOH
43
4
HOH
HOH
281
A
HOH
44
4
HOH
HOH
282
A
HOH
45
4
HOH
HOH
283
A
HOH
46
4
HOH
HOH
284
A
HOH
47
4
HOH
HOH
285
A
HOH
48
4
HOH
HOH
286
A
HOH
49
4
HOH
HOH
287
A
HOH
50
4
HOH
HOH
288
A
HOH
51
4
HOH
HOH
289
A
HOH
52
4
HOH
HOH
290
A
HOH
53
4
HOH
HOH
291
A
HOH
54
4
HOH
HOH
292
A
HOH
55
4
HOH
HOH
293
A
HOH
56
4
HOH
HOH
294
A
HOH
57
4
HOH
HOH
295
A
HOH
58
4
HOH
HOH
296
A
HOH
59
4
HOH
HOH
297
A
HOH
60
4
HOH
HOH
298
A
HOH
61
4
HOH
HOH
299
A
HOH
62
4
HOH
HOH
300
A
HOH
63
4
HOH
HOH
301
A
HOH
64
4
HOH
HOH
302
A
HOH
65
4
HOH
HOH
303
A
HOH
66
4
HOH
HOH
304
A
HOH
67
4
HOH
HOH
305
A
HOH
68
4
HOH
HOH
306
A
HOH
69
4
HOH
HOH
307
A
HOH
70
4
HOH
HOH
308
A
HOH
71
4
HOH
HOH
309
A
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
ARG
3
n
3
ARG
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
SER
6
n
6
SER
6
A
ILE
7
n
7
ILE
7
A
VAL
8
n
8
VAL
8
A
SER
9
n
9
SER
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
THR
14
n
14
THR
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
THR
18
n
18
THR
18
A
VAL
19
n
19
VAL
19
A
THR
20
n
20
THR
20
A
ALA
21
n
21
ALA
21
A
ASN
22
n
22
ASN
22
A
LEU
23
n
23
LEU
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
LEU
27
n
27
LEU
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
ARG
30
n
30
ARG
30
A
GLY
31
n
31
GLY
31
A
ARG
32
n
32
ARG
32
A
LYS
33
n
33
LYS
33
A
VAL
34
n
34
VAL
34
A
LEU
35
n
35
LEU
35
A
ALA
36
n
36
ALA
36
A
VAL
37
n
37
VAL
37
A
ASP
38
n
38
ASP
38
A
GLY
39
n
39
GLY
39
A
ASP
40
n
40
ASP
40
A
LEU
41
n
41
LEU
41
A
THR
42
n
42
THR
42
A
MET
43
n
43
MET
43
A
ALA
44
n
44
ALA
44
A
ASN
45
n
45
ASN
45
A
LEU
46
n
46
LEU
46
A
SER
47
n
47
SER
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
ASP
54
n
54
ASP
54
A
PRO
55
n
55
PRO
55
A
ASP
56
n
56
ASP
56
A
VAL
57
n
57
VAL
57
A
THR
58
n
58
THR
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
ASP
61
n
61
ASP
61
A
VAL
62
n
62
VAL
62
A
LEU
63
n
63
LEU
63
A
ALA
64
n
64
ALA
64
A
GLY
65
n
65
GLY
65
A
GLU
66
n
66
GLU
66
A
ALA
67
n
67
ALA
67
A
ASN
68
n
68
ASN
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
ASP
71
n
71
ASP
71
A
ALA
72
n
72
ALA
72
A
ILE
73
n
73
ILE
73
A
TYR
74
n
74
TYR
74
A
MET
75
n
75
MET
75
A
THR
76
n
76
THR
76
A
GLN
77
n
77
GLN
77
A
PHE
78
n
78
PHE
78
A
ASP
79
n
79
ASP
79
A
ASN
80
n
80
ASN
80
A
VAL
81
n
81
VAL
81
A
TYR
82
n
82
TYR
82
A
VAL
83
n
83
VAL
83
A
LEU
84
n
84
LEU
84
A
PRO
85
n
85
PRO
85
A
GLY
86
n
86
GLY
86
A
ALA
87
n
87
ALA
87
A
VAL
88
n
88
VAL
88
A
ASP
89
n
89
ASP
89
A
TRP
90
n
90
TRP
90
A
GLU
91
n
91
GLU
91
A
HIS
92
n
92
HIS
92
A
VAL
93
n
93
VAL
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
ALA
96
n
96
ALA
96
A
ASP
97
n
97
ASP
97
A
PRO
98
n
98
PRO
98
A
ARG
99
n
99
ARG
99
A
LYS
100
n
100
LYS
100
A
LEU
101
n
101
LEU
101
A
PRO
102
n
102
PRO
102
A
GLU
103
n
103
GLU
103
A
VAL
104
n
104
VAL
104
A
ILE
105
n
105
ILE
105
A
LYS
106
n
106
LYS
106
A
SER
107
n
107
SER
107
A
LEU
108
n
108
LEU
108
A
LYS
109
n
109
LYS
109
A
ASP
110
n
110
ASP
110
A
LYS
111
n
111
LYS
111
A
PHE
112
n
112
PHE
112
A
ASP
113
n
113
ASP
113
A
PHE
114
n
114
PHE
114
A
ILE
115
n
115
ILE
115
A
LEU
116
n
116
LEU
116
A
ILE
117
n
117
ILE
117
A
ASP
118
n
118
ASP
118
A
CYS
119
n
119
CYS
119
A
PRO
120
n
120
PRO
120
A
ALA
121
n
121
ALA
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
GLN
124
n
124
GLN
124
A
LEU
125
n
125
LEU
125
A
ASP
126
n
126
ASP
126
A
ALA
127
n
127
ALA
127
A
MET
128
n
128
MET
128
A
SER
129
n
129
SER
129
A
ALA
130
n
130
ALA
130
A
MET
131
n
131
MET
131
A
LEU
132
n
132
LEU
132
A
SER
133
n
133
SER
133
A
GLY
134
n
134
GLY
134
A
GLU
135
n
135
GLU
135
A
GLU
136
n
136
GLU
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
LEU
139
n
139
LEU
139
A
VAL
140
n
140
VAL
140
A
THR
141
n
141
THR
141
A
ASN
142
n
142
ASN
142
A
PRO
143
n
143
PRO
143
A
GLU
144
n
144
GLU
144
A
ILE
145
n
145
ILE
145
A
SER
146
n
146
SER
146
A
CYS
147
n
147
CYS
147
A
LEU
148
n
148
LEU
148
A
THR
149
n
149
THR
149
A
ASP
150
n
150
ASP
150
A
THR
151
n
151
THR
151
A
MET
152
n
152
MET
152
A
LYS
153
n
153
LYS
153
A
VAL
154
n
154
VAL
154
A
GLY
155
n
155
GLY
155
A
ILE
156
n
156
ILE
156
A
VAL
157
n
157
VAL
157
A
LEU
158
n
158
LEU
158
A
LYS
159
n
159
LYS
159
A
LYS
160
n
160
LYS
160
A
ALA
161
n
161
ALA
161
A
GLY
162
n
162
GLY
162
A
LEU
163
n
163
LEU
163
A
ALA
164
n
164
ALA
164
A
ILE
165
n
165
ILE
165
A
LEU
166
n
166
LEU
166
A
GLY
167
n
167
GLY
167
A
PHE
168
n
168
PHE
168
A
VAL
169
n
169
VAL
169
A
LEU
170
n
170
LEU
170
A
ASN
171
n
171
ASN
171
A
ARG
172
n
172
ARG
172
A
TYR
173
n
173
TYR
173
A
GLY
174
n
174
GLY
174
A
ARG
175
n
175
ARG
175
A
SER
176
n
176
SER
176
A
ASP
177
n
177
ASP
177
A
ARG
178
n
178
ARG
178
A
ASP
179
n
179
ASP
179
A
ILE
180
n
180
ILE
180
A
PRO
181
n
181
PRO
181
A
PRO
182
n
182
PRO
182
A
GLU
183
n
183
GLU
183
A
ALA
184
n
184
ALA
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
ASP
187
n
187
ASP
187
A
VAL
188
n
188
VAL
188
A
MET
189
n
189
MET
189
A
GLU
190
n
190
GLU
190
A
VAL
191
n
191
VAL
191
A
PRO
192
n
192
PRO
192
A
LEU
193
n
193
LEU
193
A
LEU
194
n
194
LEU
194
A
ALA
195
n
195
ALA
195
A
VAL
196
n
196
VAL
196
A
ILE
197
n
197
ILE
197
A
PRO
198
n
198
PRO
198
A
GLU
199
n
199
GLU
199
A
ASP
200
n
200
ASP
200
A
PRO
201
n
201
PRO
201
A
ALA
202
n
202
ALA
202
A
ILE
203
n
203
ILE
203
A
ARG
204
n
204
ARG
204
A
GLU
205
n
205
GLU
205
A
GLY
206
n
206
GLY
206
A
THR
207
n
207
THR
207
A
LEU
208
n
208
LEU
208
A
GLU
209
n
209
GLU
209
A
GLY
210
n
210
GLY
210
A
ILE
211
n
211
ILE
211
A
PRO
212
n
212
PRO
212
A
ALA
213
n
213
ALA
213
A
VAL
214
n
214
VAL
214
A
LYS
215
n
215
LYS
215
A
TYR
216
n
216
TYR
216
A
LYS
217
n
217
LYS
217
A
PRO
218
n
218
PRO
218
A
GLU
219
n
219
GLU
219
A
SER
220
n
220
SER
220
A
LYS
221
n
221
LYS
221
A
GLY
222
n
222
GLY
222
A
ALA
223
n
223
ALA
223
A
LYS
224
n
224
LYS
224
A
ALA
225
n
225
ALA
225
A
PHE
226
n
226
PHE
226
A
VAL
227
n
227
VAL
227
A
LYS
228
n
228
LYS
228
A
LEU
229
n
229
LEU
229
A
ALA
230
n
230
ALA
230
A
GLU
231
n
231
GLU
231
A
GLU
232
n
232
GLU
232
A
ILE
233
n
233
ILE
233
A
GLU
234
n
234
GLU
234
A
LYS
235
n
235
LYS
235
A
LEU
236
n
236
LEU
236
A
ALA
237
n
237
ALA
237
A
author_defined_assembly
1
monomeric
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
A
ACP
238
C
O3G
ACP
1_555
142.4
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
A
ACP
238
C
O2B
ACP
1_555
67.7
A
ACP
238
C
O3G
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
ACP
238
C
O2B
ACP
1_555
81.3
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
296
D
O
HOH
1_555
76.2
A
ACP
238
C
O3G
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
296
D
O
HOH
1_555
117.4
A
ACP
238
C
O2B
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
296
D
O
HOH
1_555
76.0
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
297
D
O
HOH
1_555
82.0
A
ACP
238
C
O3G
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
297
D
O
HOH
1_555
71.0
A
ACP
238
C
O2B
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
297
D
O
HOH
1_555
78.3
A
HOH
296
D
O
HOH
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
297
D
O
HOH
1_555
151.1
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
98.5
A
ACP
238
C
O3G
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
105.3
A
ACP
238
C
O2B
ACP
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
160.7
A
HOH
296
D
O
HOH
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
114.8
A
HOH
297
D
O
HOH
1_555
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
86.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
74
A
N
TYR
74
A
O
VAL
83
A
O
VAL
83
A
N
TYR
82
A
N
TYR
82
A
O
VAL
34
A
O
VAL
34
A
N
LEU
35
A
N
LEU
35
A
O
PHE
114
A
O
PHE
114
A
N
ILE
115
A
N
ILE
115
A
O
ARG
3
A
O
ARG
3
A
O
ILE
4
A
O
ILE
4
A
N
GLU
136
A
N
GLU
136
A
N
ALA
137
A
N
ALA
137
A
O
ALA
164
A
O
ALA
164
A
O
PHE
168
A
O
PHE
168
A
N
LEU
194
A
N
LEU
194
1
A
LYS
11
-106.99
-67.73
1
A
ASN
45
-159.88
-28.77
1
A
PRO
143
-68.60
30.82
1
A
PRO
182
-57.14
-84.35
1
A
ASP
187
-69.10
14.33
1
A
GLU
190
70.27
36.79
1
A
ALA
195
179.43
153.87
1
A
LEU
236
-62.65
10.75
PROTEIN_REP.PA
PROTEIN.TOP
WATER.PARAM
WATER.TOP
ATPCP.PAR
ATPCP.TOP
MG_XPLOR.P
MG_XPLOR.TOP
50.1
0.00
0.00
0.00
0.00
0.00
0.00
0.2510000
0.011
0.2090000
0.2090000
2.70
19.73
494
8972
5.5
99.4
RANDOM
1549617.41
0.00
1
RESTRAINED
THROUGHOUT
0
Engh & Huber
FLAT MODEL
32.80
0.299
0.44
0.33
5.00
0.42
0.33
2.70
19.73
70
1876
32
0
1774
0.006
1.3
22.3
0.87
0.87
1.50
1.58
2.00
0.95
2.00
1.56
2.50
0.3000000
0.033
0.2530000
2.87
83
1352
6
5.8
85.2
2.7
19.7
1G3R
8972
1.0
0.0380000
1
99.4
0.2170000
2.70
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
15
A
GLY
15
HELX_P
A
ARG
30
A
ARG
30
1
1
16
A
ASN
45
A
ASN
45
HELX_P
A
LEU
50
A
LEU
50
1
2
6
A
THR
58
A
THR
58
HELX_P
A
ALA
64
A
ALA
64
1
3
7
A
ASN
68
A
ASN
68
HELX_P
A
ILE
73
A
ILE
73
5
4
6
A
ASP
89
A
ASP
89
HELX_P
A
ALA
96
A
ALA
96
1
5
8
A
ASP
97
A
ASP
97
HELX_P
A
ARG
99
A
ARG
99
5
6
3
A
LYS
100
A
LYS
100
HELX_P
A
SER
107
A
SER
107
1
7
8
A
GLN
124
A
GLN
124
HELX_P
A
LEU
132
A
LEU
132
1
8
9
A
GLU
144
A
GLU
144
HELX_P
A
GLY
162
A
GLY
162
1
9
19
A
PRO
181
A
PRO
181
HELX_P
A
GLU
190
A
GLU
190
1
10
10
A
ASP
200
A
ASP
200
HELX_P
A
GLY
210
A
GLY
210
1
11
11
A
PRO
212
A
PRO
212
HELX_P
A
LYS
217
A
LYS
217
1
12
6
A
SER
220
A
SER
220
HELX_P
A
LEU
236
A
LEU
236
1
13
17
metalc
2.261
A
THR
17
A
OG1
THR
17
1_555
A
MG
239
B
MG
MG
1_555
metalc
2.269
A
ACP
238
C
O3G
ACP
1_555
A
MG
239
B
MG
MG
1_555
metalc
2.531
A
ACP
238
C
O2B
ACP
1_555
A
MG
239
B
MG
MG
1_555
metalc
2.473
A
MG
239
B
MG
MG
1_555
A
HOH
296
D
O
HOH
1_555
metalc
2.560
A
MG
239
B
MG
MG
1_555
A
HOH
297
D
O
HOH
1_555
metalc
2.628
A
MG
239
B
MG
MG
1_555
A
HOH
309
D
O
HOH
1_555
cell cycle, hydrolase
ALPHA-BETA-ALPHA layered, PROTEIN-ADP COMPLEX, cell cycle, hydrolase
Q8U3I1_PYRFU
UNP
1
1
Q8U3I1
1
237
1G3R
1
237
Q8U3I1
A
1
1
237
8
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
TYR
74
A
TYR
74
A
MET
75
A
MET
75
A
VAL
81
A
VAL
81
A
LEU
84
A
LEU
84
A
VAL
34
A
VAL
34
A
ASP
38
A
ASP
38
A
PHE
114
A
PHE
114
A
ASP
118
A
ASP
118
A
ARG
3
A
ARG
3
A
VAL
8
A
VAL
8
A
GLU
136
A
GLU
136
A
THR
141
A
THR
141
A
ALA
164
A
ALA
164
A
TYR
173
A
TYR
173
A
LEU
193
A
LEU
193
A
PRO
198
A
PRO
198
BINDING SITE FOR RESIDUE MG A 239
A
MG
239
Software
5
BINDING SITE FOR RESIDUE ACP A 238
A
ACP
238
Software
21
A
THR
17
A
THR
17
5
1_555
A
ACP
238
C
ACP
5
1_555
A
HOH
296
D
HOH
5
1_555
A
HOH
297
D
HOH
5
1_555
A
HOH
309
D
HOH
5
1_555
A
GLY
13
A
GLY
13
21
1_555
A
THR
14
A
THR
14
21
1_555
A
GLY
15
A
GLY
15
21
1_555
A
LYS
16
A
LYS
16
21
1_555
A
THR
17
A
THR
17
21
1_555
A
THR
18
A
THR
18
21
1_555
A
ASN
171
A
ASN
171
21
1_555
A
ARG
172
A
ARG
172
21
1_555
A
ILE
197
A
ILE
197
21
1_555
A
PRO
198
A
PRO
198
21
1_555
A
GLU
199
A
GLU
199
21
1_555
A
ASP
200
A
ASP
200
21
1_555
A
ILE
203
A
ILE
203
21
1_555
A
ARG
204
A
ARG
204
21
1_555
A
THR
207
A
THR
207
21
1_555
A
MG
239
B
MG
21
1_555
A
HOH
273
D
HOH
21
1_555
A
HOH
294
D
HOH
21
1_555
A
HOH
296
D
HOH
21
1_555
A
HOH
297
D
HOH
21
1_555
A
HOH
303
D
HOH
21
1_555
198
cubic
P 21 3