1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hoshino, M. Hagihara, Y. Nishii, I. Yamazaki, T. Kato, H. Goto, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 304 927 939 10.1006/jmbi.2000.4243 11124037 Identification of the phospholipid-binding site of human beta(2)-glycoprotein I domain V by heteronuclear magnetic resonance. 2000 10.2210/pdb1g4g/pdb pdb_00001g4g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9755.360 BETA2-GLYCOPROTEIN I 1 man polymer no no TKASCKLPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDA SDVKPC TKASCKLPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDA SDVKPC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Pichia sample 9606 Homo sapiens 4922 Pichia pastoris database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2000-11-15 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details ENSEMBLE OF 20 STRUCTURES RCSB Y RCSB 2000-10-27 REL 1 3D_15N-separated_NOESY 3D_13C-separated_NOESY HNCO-TROSY HMQC-J HNHB HN(CO)HB N15-TOCSY 0.12 6.0 ambient 298 K the structures are based on a total of 1402 restraints, 1288 are NOE-derived distance constraints, 88 dihedral angle restraints, 26 distance restraints from hydrogen bonds simulated annealing minimized average structure 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O 90% H2O/10% D2O 1mM beta2-glycoprotein I domain V U-15N,13C; 20mM Na-phosphate buffer, pD 6.0; 100% D2O 100% D2O Brunger structure solution X-PLOR 3.841 Brunger refinement X-PLOR 3.841 600 Bruker DRX 800 Bruker DMX THR 1 n 1 THR 1 A LYS 2 n 2 LYS 2 A ALA 3 n 3 ALA 3 A SER 4 n 4 SER 4 A CYS 5 n 5 CYS 5 A LYS 6 n 6 LYS 6 A LEU 7 n 7 LEU 7 A PRO 8 n 8 PRO 8 A VAL 9 n 9 VAL 9 A LYS 10 n 10 LYS 10 A LYS 11 n 11 LYS 11 A ALA 12 n 12 ALA 12 A THR 13 n 13 THR 13 A VAL 14 n 14 VAL 14 A VAL 15 n 15 VAL 15 A TYR 16 n 16 TYR 16 A GLN 17 n 17 GLN 17 A GLY 18 n 18 GLY 18 A GLU 19 n 19 GLU 19 A ARG 20 n 20 ARG 20 A VAL 21 n 21 VAL 21 A LYS 22 n 22 LYS 22 A ILE 23 n 23 ILE 23 A GLN 24 n 24 GLN 24 A GLU 25 n 25 GLU 25 A LYS 26 n 26 LYS 26 A PHE 27 n 27 PHE 27 A LYS 28 n 28 LYS 28 A ASN 29 n 29 ASN 29 A GLY 30 n 30 GLY 30 A MET 31 n 31 MET 31 A LEU 32 n 32 LEU 32 A HIS 33 n 33 HIS 33 A GLY 34 n 34 GLY 34 A ASP 35 n 35 ASP 35 A LYS 36 n 36 LYS 36 A VAL 37 n 37 VAL 37 A SER 38 n 38 SER 38 A PHE 39 n 39 PHE 39 A PHE 40 n 40 PHE 40 A CYS 41 n 41 CYS 41 A LYS 42 n 42 LYS 42 A ASN 43 n 43 ASN 43 A LYS 44 n 44 LYS 44 A GLU 45 n 45 GLU 45 A LYS 46 n 46 LYS 46 A LYS 47 n 47 LYS 47 A CYS 48 n 48 CYS 48 A SER 49 n 49 SER 49 A TYR 50 n 50 TYR 50 A THR 51 n 51 THR 51 A GLU 52 n 52 GLU 52 A ASP 53 n 53 ASP 53 A ALA 54 n 54 ALA 54 A GLN 55 n 55 GLN 55 A CYS 56 n 56 CYS 56 A ILE 57 n 57 ILE 57 A ASP 58 n 58 ASP 58 A GLY 59 n 59 GLY 59 A THR 60 n 60 THR 60 A ILE 61 n 61 ILE 61 A GLU 62 n 62 GLU 62 A VAL 63 n 63 VAL 63 A PRO 64 n 64 PRO 64 A LYS 65 n 65 LYS 65 A CYS 66 n 66 CYS 66 A PHE 67 n 67 PHE 67 A LYS 68 n 68 LYS 68 A GLU 69 n 69 GLU 69 A HIS 70 n 70 HIS 70 A SER 71 n 71 SER 71 A SER 72 n 72 SER 72 A LEU 73 n 73 LEU 73 A ALA 74 n 74 ALA 74 A PHE 75 n 75 PHE 75 A TRP 76 n 76 TRP 76 A LYS 77 n 77 LYS 77 A THR 78 n 78 THR 78 A ASP 79 n 79 ASP 79 A ALA 80 n 80 ALA 80 A SER 81 n 81 SER 81 A ASP 82 n 82 ASP 82 A VAL 83 n 83 VAL 83 A LYS 84 n 84 LYS 84 A PRO 85 n 85 PRO 85 A CYS 86 n 86 CYS 86 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 14 A O VAL 14 A N VAL 21 A N VAL 21 A N ASN 43 A N ASN 43 A O CYS 48 A O CYS 48 A N ILE 57 A N ILE 57 A O THR 60 A O THR 60 1 A A O H ASP ASP 79 82 1.49 1 A A H O ASN CYS 43 48 1.52 1 A A H O CYS MET 5 31 1.54 1 A A H OD1 ALA ASP 3 58 1.56 1 A A O H LYS GLU 22 25 1.59 1 A ARG 20 0.153 SIDE CHAIN 1 A SER 4 -54.67 -178.47 1 A CYS 5 -101.78 -145.10 1 A LEU 7 -39.65 100.65 1 A LYS 11 -148.21 43.13 1 A ASN 29 -100.24 51.79 1 A ASP 58 -53.60 97.33 1 A PHE 67 -55.10 172.65 1 A HIS 70 -160.12 -35.87 1 A SER 71 46.44 95.53 1 A SER 72 -55.34 -164.08 1 A LEU 73 57.40 71.13 1 A PHE 75 -106.34 -159.58 1 A TRP 76 -60.20 94.18 1 A LYS 77 -178.87 108.41 minimized average NMR STRUCTURE OF THE FIFTH DOMAIN OF HUMAN BETA2-GLYCOPROTEIN I 1 N N A ILE 23 A ILE 23 HELX_P A PHE 27 A PHE 27 1 1 5 A ASP 79 A ASP 79 HELX_P A VAL 83 A VAL 83 5 2 5 disulf 2.020 A CYS 5 A SG CYS 5 1_555 A CYS 56 A SG CYS 56 1_555 disulf 2.021 A CYS 41 A SG CYS 41 1_555 A CYS 66 A SG CYS 66 1_555 disulf 2.022 A CYS 48 A SG CYS 48 1_555 A CYS 86 A SG CYS 86 1_555 SIGNALING PROTEIN short consensus repeat, sushi-domain, SIGNALING PROTEIN APOH_HUMAN UNP 1 260 P02749 CKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDA SDVKPC 260 345 1G4G 1 86 P02749 A 1 1 86 1 CYS conflict THR 1 1G4G A P02749 UNP 260 1 1 VAL variant LEU 7 1G4G A P02749 UNP 266 7 2 3 anti-parallel anti-parallel anti-parallel A THR 13 A THR 13 A VAL 15 A VAL 15 A ARG 20 A ARG 20 A LYS 22 A LYS 22 A LYS 36 A LYS 36 A ASN 43 A ASN 43 A CYS 48 A CYS 48 A ILE 57 A ILE 57 A THR 60 A THR 60 A ILE 61 A ILE 61 1 P 1