1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Petros, A.M. Nettesheim, D.G. Wang, Y. Olejniczak, E.T. Meadows, R.P. Mack, J. Swift, K. Matayoshi, E.D. Zhang, H. Thompson, C.B. Fesik, S.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 9 2528 2534 10.1017/S096183680000331X 11206074 Rationale for Bcl-xL/Bad peptide complex formation from structure, mutagenesis, and biophysical studies. 2000 10.2210/pdb1g5j/pdb pdb_00001g5j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 19976.037 APOPTOSIS REGULATOR BCL-X RESIDUES 1-209 1 man polymer 3109.521 BAD PROTEIN RESIDUES 140-164 E320K, G321D, G325K 1 syn polymer no no MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLE MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLE A polypeptide(L) no no NLWAAQRYGRELRRMSDEFVDSFKK NLWAAQRYGRELRRMSDEFVDSFKK B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample BCLX 9606 Homo sapiens 562 Escherichia coli database_2 pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-02-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE Human Bcl-2, isoform 1 Human Bcl-2, isoform 2 RCSB Y RCSB 2000-11-01 REL The BAD peptide was chemically synthesized. sample 1 3D_15N-separated_NOESY 3D_13C-separated_NOESY 40 mM sodium phosphate 7.0 ambient 303 K simulated annealing minimized average structure 15N-Bcl-xL/unlabeled Bad peptide; 15N,13C-Bcl-xL/unlabelled Bad peptide H2O; D2O Brunger, A. refinement X-PLOR 3.1 800 Bruker AVANCE 600 Bruker AVANCE MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A MET 3 n 3 MET 3 A ALA 4 n 4 ALA 4 A MET 5 n 5 MET 5 A SER 6 n 6 SER 6 A GLN 7 n 7 GLN 7 A SER 8 n 8 SER 8 A ASN 9 n 9 ASN 9 A ARG 10 n 10 ARG 10 A GLU 11 n 11 GLU 11 A LEU 12 n 12 LEU 12 A VAL 13 n 13 VAL 13 A VAL 14 n 14 VAL 14 A ASP 15 n 15 ASP 15 A PHE 16 n 16 PHE 16 A LEU 17 n 17 LEU 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A LYS 20 n 20 LYS 20 A LEU 21 n 21 LEU 21 A SER 22 n 22 SER 22 A GLN 23 n 23 GLN 23 A LYS 24 n 24 LYS 24 A GLY 25 n 25 GLY 25 A TYR 26 n 26 TYR 26 A SER 27 n 27 SER 27 A TRP 28 n 28 TRP 28 A SER 29 n 29 SER 29 A GLN 30 n 30 GLN 30 A PHE 31 n 31 PHE 31 A SER 32 n 32 SER 32 A ASP 33 n 33 ASP 33 A VAL 34 n 34 VAL 34 A GLU 35 n 35 GLU 35 A GLU 36 n 36 GLU 36 A ASN 37 n 37 ASN 37 A ARG 38 n 38 ARG 38 A THR 39 n 39 THR 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A PRO 42 n 42 PRO 42 A GLU 43 n 43 GLU 43 A GLY 44 n 44 GLY 44 A THR 45 n 45 THR 45 A GLU 46 n 46 GLU 46 A SER 47 n 47 SER 47 A GLU 48 n 48 GLU 48 A ALA 89 n 49 ALA 89 A VAL 90 n 50 VAL 90 A LYS 91 n 51 LYS 91 A GLN 92 n 52 GLN 92 A ALA 93 n 53 ALA 93 A LEU 94 n 54 LEU 94 A ARG 95 n 55 ARG 95 A GLU 96 n 56 GLU 96 A ALA 97 n 57 ALA 97 A GLY 98 n 58 GLY 98 A ASP 99 n 59 ASP 99 A GLU 100 n 60 GLU 100 A PHE 101 n 61 PHE 101 A GLU 102 n 62 GLU 102 A LEU 103 n 63 LEU 103 A ARG 104 n 64 ARG 104 A TYR 105 n 65 TYR 105 A ARG 106 n 66 ARG 106 A ARG 107 n 67 ARG 107 A ALA 108 n 68 ALA 108 A PHE 109 n 69 PHE 109 A SER 110 n 70 SER 110 A ASP 111 n 71 ASP 111 A LEU 112 n 72 LEU 112 A THR 113 n 73 THR 113 A SER 114 n 74 SER 114 A GLN 115 n 75 GLN 115 A LEU 116 n 76 LEU 116 A HIS 117 n 77 HIS 117 A ILE 118 n 78 ILE 118 A THR 119 n 79 THR 119 A PRO 120 n 80 PRO 120 A GLY 121 n 81 GLY 121 A THR 122 n 82 THR 122 A ALA 123 n 83 ALA 123 A TYR 124 n 84 TYR 124 A GLN 125 n 85 GLN 125 A SER 126 n 86 SER 126 A PHE 127 n 87 PHE 127 A GLU 128 n 88 GLU 128 A GLN 129 n 89 GLN 129 A VAL 130 n 90 VAL 130 A VAL 131 n 91 VAL 131 A ASN 132 n 92 ASN 132 A GLU 133 n 93 GLU 133 A LEU 134 n 94 LEU 134 A PHE 135 n 95 PHE 135 A ARG 136 n 96 ARG 136 A ASP 137 n 97 ASP 137 A GLY 138 n 98 GLY 138 A VAL 139 n 99 VAL 139 A ASN 140 n 100 ASN 140 A TRP 141 n 101 TRP 141 A GLY 142 n 102 GLY 142 A ARG 143 n 103 ARG 143 A ILE 144 n 104 ILE 144 A VAL 145 n 105 VAL 145 A ALA 146 n 106 ALA 146 A PHE 147 n 107 PHE 147 A PHE 148 n 108 PHE 148 A SER 149 n 109 SER 149 A PHE 150 n 110 PHE 150 A GLY 151 n 111 GLY 151 A GLY 152 n 112 GLY 152 A ALA 153 n 113 ALA 153 A LEU 154 n 114 LEU 154 A CYS 155 n 115 CYS 155 A VAL 156 n 116 VAL 156 A GLU 157 n 117 GLU 157 A SER 158 n 118 SER 158 A VAL 159 n 119 VAL 159 A ASP 160 n 120 ASP 160 A LYS 161 n 121 LYS 161 A GLU 162 n 122 GLU 162 A MET 163 n 123 MET 163 A GLN 164 n 124 GLN 164 A VAL 165 n 125 VAL 165 A LEU 166 n 126 LEU 166 A VAL 167 n 127 VAL 167 A SER 168 n 128 SER 168 A ARG 169 n 129 ARG 169 A ILE 170 n 130 ILE 170 A ALA 171 n 131 ALA 171 A ALA 172 n 132 ALA 172 A TRP 173 n 133 TRP 173 A MET 174 n 134 MET 174 A ALA 175 n 135 ALA 175 A THR 176 n 136 THR 176 A TYR 177 n 137 TYR 177 A LEU 178 n 138 LEU 178 A ASN 179 n 139 ASN 179 A ASP 180 n 140 ASP 180 A HIS 181 n 141 HIS 181 A LEU 182 n 142 LEU 182 A GLU 183 n 143 GLU 183 A PRO 184 n 144 PRO 184 A TRP 185 n 145 TRP 185 A ILE 186 n 146 ILE 186 A GLN 187 n 147 GLN 187 A GLU 188 n 148 GLU 188 A ASN 189 n 149 ASN 189 A GLY 190 n 150 GLY 190 A GLY 191 n 151 GLY 191 A TRP 192 n 152 TRP 192 A ASP 193 n 153 ASP 193 A THR 194 n 154 THR 194 A PHE 195 n 155 PHE 195 A VAL 196 n 156 VAL 196 A GLU 197 n 157 GLU 197 A LEU 198 n 158 LEU 198 A TYR 199 n 159 TYR 199 A GLY 200 n 160 GLY 200 A ASN 201 n 161 ASN 201 A ASN 202 n 162 ASN 202 A ALA 203 n 163 ALA 203 A ALA 204 n 164 ALA 204 A ALA 205 n 165 ALA 205 A GLU 206 n 166 GLU 206 A SER 207 n 167 SER 207 A ARG 208 n 168 ARG 208 A LYS 209 n 169 LYS 209 A GLY 210 n 170 GLY 210 A GLN 211 n 171 GLN 211 A GLU 212 n 172 GLU 212 A ARG 213 n 173 ARG 213 A LEU 214 n 174 LEU 214 A GLU 215 n 175 GLU 215 A ASN 301 n 1 ASN 301 B LEU 302 n 2 LEU 302 B TRP 303 n 3 TRP 303 B ALA 304 n 4 ALA 304 B ALA 305 n 5 ALA 305 B GLN 306 n 6 GLN 306 B ARG 307 n 7 ARG 307 B TYR 308 n 8 TYR 308 B GLY 309 n 9 GLY 309 B ARG 310 n 10 ARG 310 B GLU 311 n 11 GLU 311 B LEU 312 n 12 LEU 312 B ARG 313 n 13 ARG 313 B ARG 314 n 14 ARG 314 B MET 315 n 15 MET 315 B SER 316 n 16 SER 316 B ASP 317 n 17 ASP 317 B GLU 318 n 18 GLU 318 B PHE 319 n 19 PHE 319 B VAL 320 n 20 VAL 320 B ASP 321 n 21 ASP 321 B SER 322 n 22 SER 322 B PHE 323 n 23 PHE 323 B LYS 324 n 24 LYS 324 B LYS 325 n 25 LYS 325 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A SER 32 -114.47 -87.16 1 A ASP 33 169.48 42.73 1 A VAL 34 -61.73 83.14 1 A GLU 35 -48.21 -74.59 1 A GLU 36 -178.87 -178.30 1 A ASN 37 -48.36 168.34 1 A ARG 38 67.87 100.55 1 A GLU 40 61.37 155.32 1 A ALA 41 165.98 107.26 1 A THR 45 -169.28 37.55 1 A PHE 109 -90.12 52.34 1 A SER 110 -116.61 -158.73 1 A PRO 120 -52.22 106.12 1 A ARG 136 -47.76 -75.39 1 A ASP 137 -115.62 75.91 1 A VAL 139 -130.76 -80.38 1 A ASN 140 57.60 160.23 1 A VAL 167 -52.96 -79.12 1 A HIS 181 -104.11 -76.19 1 A LEU 182 -67.38 77.56 1 A GLU 183 -132.37 -69.23 1 A ARG 213 75.47 -61.47 1 A LEU 214 76.94 -67.46 1 B ALA 304 -56.31 -106.75 1 B ALA 305 3.04 -72.79 1 B ASP 321 178.41 -37.91 minimized average COMPLEX OF BCL-XL WITH PEPTIDE FROM BAD 1 N N 2 N N A SER 2 A SER 2 HELX_P A ALA 4 A ALA 4 5 1 3 A MET 5 A MET 5 HELX_P A GLY 25 A GLY 25 1 2 21 A SER 27 A SER 27 HELX_P A PHE 31 A PHE 31 5 3 5 A THR 45 A THR 45 HELX_P A TYR 105 A TYR 65 1 4 21 A ARG 106 A ARG 66 HELX_P A SER 110 A SER 70 5 5 5 A THR 122 A THR 82 HELX_P A ARG 136 A ARG 96 1 6 15 A VAL 139 A VAL 99 HELX_P A LYS 161 A LYS 121 1 7 23 A GLN 164 A GLN 124 HELX_P A HIS 181 A HIS 141 1 8 18 A GLU 183 A GLU 143 HELX_P A GLY 190 A GLY 150 1 9 8 A GLY 190 A GLY 150 HELX_P A GLY 200 A GLY 160 1 10 11 A GLY 200 A GLY 160 HELX_P A GLU 212 A GLU 172 1 11 13 B TRP 303 B TRP 3 HELX_P B VAL 320 B VAL 20 1 12 18 APOPTOSIS complex, APOPTOSIS BCLX_HUMAN UNP 1 1 Q07817 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREV IPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQ VLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER BAD_HUMAN UNP 2 1 Q92934 MGTPKQPSLAPAHALGLRKSDPGIRSLGSDAGGRRWRPAAQSMFQIPEFEPSEQEDASATDRGLGPSLTEDQPGPYLAPG LLGSNIHQQGRAATNSHHGGAGAMETRSRHSSYPAGTEEDEGMEEELSPFRGRSRSAPPNLWAAQRYGRELRRMSDEFEG SFKG 1 44 1G5J 5 48 Q07817 A 1 5 48 85 209 1G5J 89 213 Q07817 A 1 49 173 140 164 1G5J 301 325 Q92934 B 2 1 25 1 cloning artifact MET 1 1G5J A Q07817 UNP 1 1 cloning artifact SER 2 1G5J A Q07817 UNP 2 1 cloning artifact MET 3 1G5J A Q07817 UNP 3 1 cloning artifact ALA 4 1G5J A Q07817 UNP 4 1 cloning artifact LEU 214 1G5J A Q07817 UNP 174 1 cloning artifact GLU 215 1G5J A Q07817 UNP 175 3 GLU engineered mutation VAL 320 1G5J B Q07817 UNP 159 20 3 GLY engineered mutation ASP 321 1G5J B Q07817 UNP 160 21 3 GLY engineered mutation LYS 325 1G5J B Q07817 UNP 164 25 1 P 1