1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Petros, A.M.
Nettesheim, D.G.
Wang, Y.
Olejniczak, E.T.
Meadows, R.P.
Mack, J.
Swift, K.
Matayoshi, E.D.
Zhang, H.
Thompson, C.B.
Fesik, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
9
2528
2534
10.1017/S096183680000331X
11206074
Rationale for Bcl-xL/Bad peptide complex formation from structure, mutagenesis, and biophysical studies.
2000
10.2210/pdb1g5j/pdb
pdb_00001g5j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
19976.037
APOPTOSIS REGULATOR BCL-X
RESIDUES 1-209
1
man
polymer
3109.521
BAD PROTEIN
RESIDUES 140-164
E320K, G321D, G325K
1
syn
polymer
no
no
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP
GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
NNAAAESRKGQERLE
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP
GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
NNAAAESRKGQERLE
A
polypeptide(L)
no
no
NLWAAQRYGRELRRMSDEFVDSFKK
NLWAAQRYGRELRRMSDEFVDSFKK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
BCLX
9606
Homo sapiens
562
Escherichia coli
database_2
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-02-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Human Bcl-2, isoform 1
Human Bcl-2, isoform 2
RCSB
Y
RCSB
2000-11-01
REL
The BAD peptide was chemically synthesized.
sample
1
3D_15N-separated_NOESY
3D_13C-separated_NOESY
40 mM sodium phosphate
7.0
ambient
303
K
simulated annealing
minimized average structure
15N-Bcl-xL/unlabeled Bad peptide; 15N,13C-Bcl-xL/unlabelled Bad peptide
H2O; D2O
Brunger, A.
refinement
X-PLOR
3.1
800
Bruker
AVANCE
600
Bruker
AVANCE
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
MET
3
n
3
MET
3
A
ALA
4
n
4
ALA
4
A
MET
5
n
5
MET
5
A
SER
6
n
6
SER
6
A
GLN
7
n
7
GLN
7
A
SER
8
n
8
SER
8
A
ASN
9
n
9
ASN
9
A
ARG
10
n
10
ARG
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
VAL
13
n
13
VAL
13
A
VAL
14
n
14
VAL
14
A
ASP
15
n
15
ASP
15
A
PHE
16
n
16
PHE
16
A
LEU
17
n
17
LEU
17
A
SER
18
n
18
SER
18
A
TYR
19
n
19
TYR
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
GLN
23
n
23
GLN
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
TYR
26
n
26
TYR
26
A
SER
27
n
27
SER
27
A
TRP
28
n
28
TRP
28
A
SER
29
n
29
SER
29
A
GLN
30
n
30
GLN
30
A
PHE
31
n
31
PHE
31
A
SER
32
n
32
SER
32
A
ASP
33
n
33
ASP
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
GLU
36
n
36
GLU
36
A
ASN
37
n
37
ASN
37
A
ARG
38
n
38
ARG
38
A
THR
39
n
39
THR
39
A
GLU
40
n
40
GLU
40
A
ALA
41
n
41
ALA
41
A
PRO
42
n
42
PRO
42
A
GLU
43
n
43
GLU
43
A
GLY
44
n
44
GLY
44
A
THR
45
n
45
THR
45
A
GLU
46
n
46
GLU
46
A
SER
47
n
47
SER
47
A
GLU
48
n
48
GLU
48
A
ALA
89
n
49
ALA
89
A
VAL
90
n
50
VAL
90
A
LYS
91
n
51
LYS
91
A
GLN
92
n
52
GLN
92
A
ALA
93
n
53
ALA
93
A
LEU
94
n
54
LEU
94
A
ARG
95
n
55
ARG
95
A
GLU
96
n
56
GLU
96
A
ALA
97
n
57
ALA
97
A
GLY
98
n
58
GLY
98
A
ASP
99
n
59
ASP
99
A
GLU
100
n
60
GLU
100
A
PHE
101
n
61
PHE
101
A
GLU
102
n
62
GLU
102
A
LEU
103
n
63
LEU
103
A
ARG
104
n
64
ARG
104
A
TYR
105
n
65
TYR
105
A
ARG
106
n
66
ARG
106
A
ARG
107
n
67
ARG
107
A
ALA
108
n
68
ALA
108
A
PHE
109
n
69
PHE
109
A
SER
110
n
70
SER
110
A
ASP
111
n
71
ASP
111
A
LEU
112
n
72
LEU
112
A
THR
113
n
73
THR
113
A
SER
114
n
74
SER
114
A
GLN
115
n
75
GLN
115
A
LEU
116
n
76
LEU
116
A
HIS
117
n
77
HIS
117
A
ILE
118
n
78
ILE
118
A
THR
119
n
79
THR
119
A
PRO
120
n
80
PRO
120
A
GLY
121
n
81
GLY
121
A
THR
122
n
82
THR
122
A
ALA
123
n
83
ALA
123
A
TYR
124
n
84
TYR
124
A
GLN
125
n
85
GLN
125
A
SER
126
n
86
SER
126
A
PHE
127
n
87
PHE
127
A
GLU
128
n
88
GLU
128
A
GLN
129
n
89
GLN
129
A
VAL
130
n
90
VAL
130
A
VAL
131
n
91
VAL
131
A
ASN
132
n
92
ASN
132
A
GLU
133
n
93
GLU
133
A
LEU
134
n
94
LEU
134
A
PHE
135
n
95
PHE
135
A
ARG
136
n
96
ARG
136
A
ASP
137
n
97
ASP
137
A
GLY
138
n
98
GLY
138
A
VAL
139
n
99
VAL
139
A
ASN
140
n
100
ASN
140
A
TRP
141
n
101
TRP
141
A
GLY
142
n
102
GLY
142
A
ARG
143
n
103
ARG
143
A
ILE
144
n
104
ILE
144
A
VAL
145
n
105
VAL
145
A
ALA
146
n
106
ALA
146
A
PHE
147
n
107
PHE
147
A
PHE
148
n
108
PHE
148
A
SER
149
n
109
SER
149
A
PHE
150
n
110
PHE
150
A
GLY
151
n
111
GLY
151
A
GLY
152
n
112
GLY
152
A
ALA
153
n
113
ALA
153
A
LEU
154
n
114
LEU
154
A
CYS
155
n
115
CYS
155
A
VAL
156
n
116
VAL
156
A
GLU
157
n
117
GLU
157
A
SER
158
n
118
SER
158
A
VAL
159
n
119
VAL
159
A
ASP
160
n
120
ASP
160
A
LYS
161
n
121
LYS
161
A
GLU
162
n
122
GLU
162
A
MET
163
n
123
MET
163
A
GLN
164
n
124
GLN
164
A
VAL
165
n
125
VAL
165
A
LEU
166
n
126
LEU
166
A
VAL
167
n
127
VAL
167
A
SER
168
n
128
SER
168
A
ARG
169
n
129
ARG
169
A
ILE
170
n
130
ILE
170
A
ALA
171
n
131
ALA
171
A
ALA
172
n
132
ALA
172
A
TRP
173
n
133
TRP
173
A
MET
174
n
134
MET
174
A
ALA
175
n
135
ALA
175
A
THR
176
n
136
THR
176
A
TYR
177
n
137
TYR
177
A
LEU
178
n
138
LEU
178
A
ASN
179
n
139
ASN
179
A
ASP
180
n
140
ASP
180
A
HIS
181
n
141
HIS
181
A
LEU
182
n
142
LEU
182
A
GLU
183
n
143
GLU
183
A
PRO
184
n
144
PRO
184
A
TRP
185
n
145
TRP
185
A
ILE
186
n
146
ILE
186
A
GLN
187
n
147
GLN
187
A
GLU
188
n
148
GLU
188
A
ASN
189
n
149
ASN
189
A
GLY
190
n
150
GLY
190
A
GLY
191
n
151
GLY
191
A
TRP
192
n
152
TRP
192
A
ASP
193
n
153
ASP
193
A
THR
194
n
154
THR
194
A
PHE
195
n
155
PHE
195
A
VAL
196
n
156
VAL
196
A
GLU
197
n
157
GLU
197
A
LEU
198
n
158
LEU
198
A
TYR
199
n
159
TYR
199
A
GLY
200
n
160
GLY
200
A
ASN
201
n
161
ASN
201
A
ASN
202
n
162
ASN
202
A
ALA
203
n
163
ALA
203
A
ALA
204
n
164
ALA
204
A
ALA
205
n
165
ALA
205
A
GLU
206
n
166
GLU
206
A
SER
207
n
167
SER
207
A
ARG
208
n
168
ARG
208
A
LYS
209
n
169
LYS
209
A
GLY
210
n
170
GLY
210
A
GLN
211
n
171
GLN
211
A
GLU
212
n
172
GLU
212
A
ARG
213
n
173
ARG
213
A
LEU
214
n
174
LEU
214
A
GLU
215
n
175
GLU
215
A
ASN
301
n
1
ASN
301
B
LEU
302
n
2
LEU
302
B
TRP
303
n
3
TRP
303
B
ALA
304
n
4
ALA
304
B
ALA
305
n
5
ALA
305
B
GLN
306
n
6
GLN
306
B
ARG
307
n
7
ARG
307
B
TYR
308
n
8
TYR
308
B
GLY
309
n
9
GLY
309
B
ARG
310
n
10
ARG
310
B
GLU
311
n
11
GLU
311
B
LEU
312
n
12
LEU
312
B
ARG
313
n
13
ARG
313
B
ARG
314
n
14
ARG
314
B
MET
315
n
15
MET
315
B
SER
316
n
16
SER
316
B
ASP
317
n
17
ASP
317
B
GLU
318
n
18
GLU
318
B
PHE
319
n
19
PHE
319
B
VAL
320
n
20
VAL
320
B
ASP
321
n
21
ASP
321
B
SER
322
n
22
SER
322
B
PHE
323
n
23
PHE
323
B
LYS
324
n
24
LYS
324
B
LYS
325
n
25
LYS
325
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
SER
32
-114.47
-87.16
1
A
ASP
33
169.48
42.73
1
A
VAL
34
-61.73
83.14
1
A
GLU
35
-48.21
-74.59
1
A
GLU
36
-178.87
-178.30
1
A
ASN
37
-48.36
168.34
1
A
ARG
38
67.87
100.55
1
A
GLU
40
61.37
155.32
1
A
ALA
41
165.98
107.26
1
A
THR
45
-169.28
37.55
1
A
PHE
109
-90.12
52.34
1
A
SER
110
-116.61
-158.73
1
A
PRO
120
-52.22
106.12
1
A
ARG
136
-47.76
-75.39
1
A
ASP
137
-115.62
75.91
1
A
VAL
139
-130.76
-80.38
1
A
ASN
140
57.60
160.23
1
A
VAL
167
-52.96
-79.12
1
A
HIS
181
-104.11
-76.19
1
A
LEU
182
-67.38
77.56
1
A
GLU
183
-132.37
-69.23
1
A
ARG
213
75.47
-61.47
1
A
LEU
214
76.94
-67.46
1
B
ALA
304
-56.31
-106.75
1
B
ALA
305
3.04
-72.79
1
B
ASP
321
178.41
-37.91
minimized average
COMPLEX OF BCL-XL WITH PEPTIDE FROM BAD
1
N
N
2
N
N
A
SER
2
A
SER
2
HELX_P
A
ALA
4
A
ALA
4
5
1
3
A
MET
5
A
MET
5
HELX_P
A
GLY
25
A
GLY
25
1
2
21
A
SER
27
A
SER
27
HELX_P
A
PHE
31
A
PHE
31
5
3
5
A
THR
45
A
THR
45
HELX_P
A
TYR
105
A
TYR
65
1
4
21
A
ARG
106
A
ARG
66
HELX_P
A
SER
110
A
SER
70
5
5
5
A
THR
122
A
THR
82
HELX_P
A
ARG
136
A
ARG
96
1
6
15
A
VAL
139
A
VAL
99
HELX_P
A
LYS
161
A
LYS
121
1
7
23
A
GLN
164
A
GLN
124
HELX_P
A
HIS
181
A
HIS
141
1
8
18
A
GLU
183
A
GLU
143
HELX_P
A
GLY
190
A
GLY
150
1
9
8
A
GLY
190
A
GLY
150
HELX_P
A
GLY
200
A
GLY
160
1
10
11
A
GLY
200
A
GLY
160
HELX_P
A
GLU
212
A
GLU
172
1
11
13
B
TRP
303
B
TRP
3
HELX_P
B
VAL
320
B
VAL
20
1
12
18
APOPTOSIS
complex, APOPTOSIS
BCLX_HUMAN
UNP
1
1
Q07817
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREV
IPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQ
VLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
BAD_HUMAN
UNP
2
1
Q92934
MGTPKQPSLAPAHALGLRKSDPGIRSLGSDAGGRRWRPAAQSMFQIPEFEPSEQEDASATDRGLGPSLTEDQPGPYLAPG
LLGSNIHQQGRAATNSHHGGAGAMETRSRHSSYPAGTEEDEGMEEELSPFRGRSRSAPPNLWAAQRYGRELRRMSDEFEG
SFKG
1
44
1G5J
5
48
Q07817
A
1
5
48
85
209
1G5J
89
213
Q07817
A
1
49
173
140
164
1G5J
301
325
Q92934
B
2
1
25
1
cloning artifact
MET
1
1G5J
A
Q07817
UNP
1
1
cloning artifact
SER
2
1G5J
A
Q07817
UNP
2
1
cloning artifact
MET
3
1G5J
A
Q07817
UNP
3
1
cloning artifact
ALA
4
1G5J
A
Q07817
UNP
4
1
cloning artifact
LEU
214
1G5J
A
Q07817
UNP
174
1
cloning artifact
GLU
215
1G5J
A
Q07817
UNP
175
3
GLU
engineered mutation
VAL
320
1G5J
B
Q07817
UNP
159
20
3
GLY
engineered mutation
ASP
321
1G5J
B
Q07817
UNP
160
21
3
GLY
engineered mutation
LYS
325
1G5J
B
Q07817
UNP
164
25
1
P 1