0.035817
0.000000
0.000000
0.000000
0.022681
0.000000
0.000000
0.000000
0.018790
0.00000
0.00000
0.00000
Soler-Lopez, M.
Malinina, L.
Tereshko, V.
Zarytova, V.
Subirana, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90
90
90
27.92
44.09
53.22
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
7
533
538
10.1007/s00775-001-0333-z
11941511
Interaction of zinc ions with d(CGCAATTGCG) in a 2.9 A resolution X-ray structure.
2002
10.2210/pdb1g6d/pdb
pdb_00001g6d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
1998-08-06
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X11
EMBL/DESY, HAMBURG
1.1
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
3045.005
PEPTIDYL-D(CGCAATTGCG)
1
syn
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
39
nat
water
no
no
(DC)(DG)(DC)(DA)(DA)(DT)(DT)(DG)(DC)(DG)
CGCAATTGCG
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.58
52.34
VAPOR DIFFUSION, HANGING DROP
7
0.5 mM adduct, 10mM sodium cacodylate, 0.75 mM Zn acetate, 10% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
adduct
1
sodium cacodylate
1
Zn acetate
1
MPD
1
MPD
2
0.258
1
19
A
2
A
9
4.027
A_DG2:DC9_A
1
-0.174
-0.584
0.853
-0.397
8.014
1
19
A
3
A
8
-0.929
A_DC3:DG8_A
2
-0.075
0.526
0.075
-0.506
7.898
1
20
A
4
A
7
-0.709
A_DA4:DT7_A
3
-18.479
-0.129
0.246
-0.158
5.621
1
20
A
5
A
6
-2.840
A_DA5:DT6_A
4
-10.335
0.192
0.121
-0.156
-5.621
1
20
A
6
A
5
-2.840
A_DT6:DA5_A
5
-10.335
-0.192
0.121
-0.156
-7.898
1
20
A
7
A
4
-0.709
A_DT7:DA4_A
6
-18.479
0.129
0.246
-0.158
-8.014
1
19
A
8
A
3
-0.929
A_DG8:DC3_A
7
-0.075
-0.526
0.075
-0.506
-0.258
1
19
A
9
A
2
4.027
A_DC9:DG2_A
8
-0.174
0.584
0.853
-0.397
3.325
39.790
A
A
2
3
3.532
A
A
9
8
3.287
2.389
0.267
0.847
AA_DG2DC3:DG8DC9_AA
1
7.452
-11.016
39.043
0.961
0.490
3.279
31.877
A
A
3
4
2.777
A
A
8
7
3.232
1.523
-0.550
0.373
AA_DC3DA4:DT7DG8_AA
2
-2.619
4.775
31.737
0.403
0.526
3.455
43.359
A
A
4
5
-3.773
A
A
7
6
3.462
-2.786
-0.150
-0.004
AA_DA4DA5:DT6DT7_AA
3
0.247
-0.334
43.273
0.282
0.228
3.475
29.695
A
A
5
6
-3.723
A
A
6
5
3.401
-1.907
0.000
-1.289
AA_DA5DT6:DA5DT6_AA
4
0.000
0.000
29.635
-2.094
0.000
3.455
43.359
A
A
6
7
-3.773
A
A
5
4
3.462
-2.786
0.150
-0.004
AA_DT6DT7:DA4DA5_AA
5
-0.247
0.334
43.273
0.282
-0.228
3.279
31.877
A
A
7
8
2.777
A
A
4
3
3.232
1.523
0.550
0.373
AA_DT7DG8:DC3DA4_AA
6
2.619
-4.775
31.737
0.403
-0.526
3.325
39.790
A
A
8
9
3.532
A
A
3
2
3.287
2.389
-0.267
0.847
AA_DG8DC9:DG2DC3_AA
7
-7.452
11.016
39.043
0.961
-0.490
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
2002-04-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-11-16
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-11-04
REL
ZN
ZINC ION
HOH
water
phosphotriester method in solution
sample
ZN
11
2
ZN
ZN
11
A
ZN
12
2
ZN
ZN
12
A
ZN
13
2
ZN
ZN
13
A
HOH
12
3
HOH
HOH
14
A
HOH
13
3
HOH
HOH
15
A
HOH
14
3
HOH
HOH
16
A
HOH
15
3
HOH
HOH
17
A
HOH
16
3
HOH
HOH
18
A
HOH
17
3
HOH
HOH
19
A
HOH
18
3
HOH
HOH
20
A
HOH
19
3
HOH
HOH
21
A
HOH
20
3
HOH
HOH
22
A
HOH
21
3
HOH
HOH
23
A
HOH
114
3
HOH
HOH
24
A
HOH
115
3
HOH
HOH
25
A
HOH
116
3
HOH
HOH
26
A
HOH
117
3
HOH
HOH
27
A
HOH
118
3
HOH
HOH
28
A
HOH
119
3
HOH
HOH
29
A
HOH
120
3
HOH
HOH
30
A
HOH
121
3
HOH
HOH
31
A
HOH
122
3
HOH
HOH
32
A
HOH
123
3
HOH
HOH
33
A
HOH
124
3
HOH
HOH
34
A
HOH
125
3
HOH
HOH
35
A
HOH
126
3
HOH
HOH
36
A
HOH
127
3
HOH
HOH
37
A
HOH
128
3
HOH
HOH
38
A
HOH
129
3
HOH
HOH
39
A
HOH
130
3
HOH
HOH
40
A
HOH
131
3
HOH
HOH
41
A
HOH
132
3
HOH
HOH
42
A
HOH
133
3
HOH
HOH
43
A
HOH
134
3
HOH
HOH
44
A
HOH
135
3
HOH
HOH
45
A
HOH
136
3
HOH
HOH
46
A
HOH
137
3
HOH
HOH
47
A
HOH
138
3
HOH
HOH
48
A
HOH
139
3
HOH
HOH
49
A
HOH
140
3
HOH
HOH
50
A
HOH
141
3
HOH
HOH
51
A
HOH
142
3
HOH
HOH
52
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
author_defined_assembly
2
dimeric
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
A
DC
1
A
OP1
DC
1
3_655
121.4
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
A
DG
10
A
OP1
DG
10
6_565
127.9
A
DC
1
A
OP1
DC
1
3_655
A
ZN
11
B
ZN
ZN
1_555
A
DG
10
A
OP1
DG
10
6_565
98.3
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
A
DG
10
A
OP1
DG
10
8_565
98.2
A
DC
1
A
OP1
DC
1
3_655
A
ZN
11
B
ZN
ZN
1_555
A
DG
10
A
OP1
DG
10
8_565
128.1
A
DG
10
A
OP1
DG
10
6_565
A
ZN
11
B
ZN
ZN
1_555
A
DG
10
A
OP1
DG
10
8_565
78.3
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
1_555
70.3
A
DC
1
A
OP1
DC
1
3_655
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
1_555
109.1
A
DG
10
A
OP1
DG
10
6_565
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
1_555
65.3
A
DG
10
A
OP1
DG
10
8_565
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
1_555
115.6
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
109.0
A
DC
1
A
OP1
DC
1
3_655
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
70.5
A
DG
10
A
OP1
DG
10
6_565
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
115.7
A
DG
10
A
OP1
DG
10
8_565
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
65.3
A
HOH
25
E
O
HOH
1_555
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
178.9
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
19
E
O
HOH
1_555
92.3
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
20
E
O
HOH
1_555
87.8
A
HOH
19
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
20
E
O
HOH
1_555
179.9
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
21
E
O
HOH
1_555
175.8
A
HOH
19
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
21
E
O
HOH
1_555
89.9
A
HOH
20
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
21
E
O
HOH
1_555
90.0
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
22
E
O
HOH
1_555
93.5
A
HOH
19
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
22
E
O
HOH
1_555
90.0
A
HOH
20
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
22
E
O
HOH
1_555
90.0
A
HOH
21
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
22
E
O
HOH
1_555
90.0
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
86.5
A
HOH
19
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
90.0
A
HOH
20
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
90.0
A
HOH
21
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
89.9
A
HOH
22
E
O
HOH
1_555
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
179.9
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
14
E
O
HOH
1_555
92.1
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
15
E
O
HOH
1_555
88.1
A
HOH
14
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
15
E
O
HOH
1_555
179.8
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
16
E
O
HOH
1_555
176.8
A
HOH
14
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
16
E
O
HOH
1_555
89.8
A
HOH
15
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
16
E
O
HOH
1_555
90.0
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
17
E
O
HOH
1_555
92.6
A
HOH
14
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
17
E
O
HOH
1_555
90.0
A
HOH
15
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
17
E
O
HOH
1_555
89.9
A
HOH
16
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
17
E
O
HOH
1_555
89.9
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
87.5
A
HOH
14
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
90.0
A
HOH
15
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
90.1
A
HOH
16
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
90.0
A
HOH
17
E
O
HOH
1_555
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
179.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
44.0900000000
0.0000000000
1
A
ZN
11
B
ZN
1
A
HOH
27
E
HOH
1
A
HOH
28
E
HOH
1
A
DG
2
0.066
SIDE CHAIN
1
A
DG
10
0.061
SIDE CHAIN
1
A
A
P
OP3
DC
DC
1
1
-0.080
0.012
1.607
1.527
N
The sequence of the peptidyl-DNA is CH3C0-RRRR-NH-(CH2)6-NH-p-d(CGCAATTGCG). The peptidyl segment was disordered and not visible in the electron density.
0.2134000
0.2083000
2.9
20
7251
770
1
0
MOLECULAR REPLACEMENT
2.9
20
39
248
3
206
0
0.00597
1.14044
2.9
20
1G6D
7251
830
2.0
0.1100000
1
10.4
2.664
94.6
phasing
AMoRE
refinement
X-PLOR
3.843
data reduction
DENZO
data scaling
SCALEPACK
STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
metalc
2.188
A
DC
1
A
OP1
DC
1
1_555
A
ZN
11
B
ZN
ZN
1_555
metalc
2.184
A
DC
1
A
OP1
DC
1
3_655
A
ZN
11
B
ZN
ZN
1_555
metalc
2.168
A
DG
2
A
N7
DG
2
1_555
A
ZN
13
D
ZN
ZN
1_555
metalc
2.292
A
DG
10
A
OP1
DG
10
6_565
A
ZN
11
B
ZN
ZN
1_555
metalc
2.292
A
DG
10
A
OP1
DG
10
8_565
A
ZN
11
B
ZN
ZN
1_555
metalc
2.191
A
DG
10
A
N7
DG
10
1_555
A
ZN
12
C
ZN
ZN
1_555
metalc
2.103
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
1_555
metalc
2.100
A
ZN
11
B
ZN
ZN
1_555
A
HOH
25
E
O
HOH
3_655
metalc
2.102
A
ZN
12
C
ZN
ZN
1_555
A
HOH
14
E
O
HOH
1_555
metalc
2.098
A
ZN
12
C
ZN
ZN
1_555
A
HOH
15
E
O
HOH
1_555
metalc
2.101
A
ZN
12
C
ZN
ZN
1_555
A
HOH
16
E
O
HOH
1_555
metalc
2.101
A
ZN
12
C
ZN
ZN
1_555
A
HOH
17
E
O
HOH
1_555
metalc
2.097
A
ZN
12
C
ZN
ZN
1_555
A
HOH
18
E
O
HOH
1_555
metalc
2.101
A
ZN
13
D
ZN
ZN
1_555
A
HOH
19
E
O
HOH
1_555
metalc
2.101
A
ZN
13
D
ZN
ZN
1_555
A
HOH
20
E
O
HOH
1_555
metalc
2.102
A
ZN
13
D
ZN
ZN
1_555
A
HOH
21
E
O
HOH
1_555
metalc
2.098
A
ZN
13
D
ZN
ZN
1_555
A
HOH
22
E
O
HOH
1_555
metalc
2.101
A
ZN
13
D
ZN
ZN
1_555
A
HOH
23
E
O
HOH
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
9
A
N3
DC
9
4_565
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
9
A
O2
DC
9
4_565
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
9
A
N4
DC
9
4_565
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
A
DG
8
A
N1
DG
8
4_565
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
A
DG
8
A
O6
DG
8
4_565
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
A
DG
8
A
N2
DG
8
4_565
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
A
DT
7
A
N3
DT
7
4_565
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
A
DT
7
A
O4
DT
7
4_565
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
A
DT
6
A
N3
DT
6
4_565
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
A
DT
6
A
O4
DT
6
4_565
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
A
DA
5
A
N1
DA
5
4_565
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
A
DA
5
A
N6
DA
5
4_565
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
A
DA
4
A
N1
DA
4
4_565
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
A
DA
4
A
N6
DA
4
4_565
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
A
DC
3
A
N3
DC
3
4_565
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
A
DC
3
A
O2
DC
3
4_565
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
A
DC
3
A
N4
DC
3
4_565
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
A
DG
2
A
N1
DG
2
4_565
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
A
DG
2
A
O6
DG
2
4_565
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
A
DG
2
A
N2
DG
2
4_565
DNA
DNA, peptidyl-DNA complex, Zn ions
1G6D
PDB
1
1G6D
1
10
1G6D
1
10
1G6D
A
1
1
10
BINDING SITE FOR RESIDUE ZN A 11
A
ZN
11
Software
6
BINDING SITE FOR RESIDUE ZN A 12
A
ZN
12
Software
6
BINDING SITE FOR RESIDUE ZN A 13
A
ZN
13
Software
6
A
DC
1
A
DC
1
6
1_555
A
DC
1
A
DC
1
6
3_655
A
DG
10
A
DG
10
6
8_565
A
DG
10
A
DG
10
6
6_565
A
HOH
25
E
HOH
6
3_655
A
HOH
25
E
HOH
6
1_555
A
DG
10
A
DG
10
6
1_555
A
HOH
14
E
HOH
6
1_555
A
HOH
15
E
HOH
6
1_555
A
HOH
16
E
HOH
6
1_555
A
HOH
17
E
HOH
6
1_555
A
HOH
18
E
HOH
6
1_555
A
DG
2
A
DG
2
6
1_555
A
HOH
19
E
HOH
6
1_555
A
HOH
20
E
HOH
6
1_555
A
HOH
21
E
HOH
6
1_555
A
HOH
22
E
HOH
6
1_555
A
HOH
23
E
HOH
6
1_555
20
C 2 2 21