0.015835
0.009143
0.000000
0.000000
0.018285
0.000000
0.000000
0.000000
0.011960
0.00000
0.00000
0.00000
Pillai, B.
Kannan, K.K.
Hosur, M.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
63.150
63.150
83.610
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Proteins
PSFGEY
0867
0887-3585
43
57
564
10.1002/1097-0134(20010401)43:1<57::AID-PROT1017>3.0.CO;2-D
11170214
1.9 A x-ray study shows closed flap conformation in crystals of tethered HIV-1 PR.
2001
10.2210/pdb1g6l/pdb
pdb_00001g6l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
296
1
293
1
IMAGE PLATE
IMAGE PLATE
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL41XU
SPring-8
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
BL41XU
SPring-8
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
TETHERED DIMER LINKED BY GGSSG
21934.824
HIV-1 PROTEASE
3.4.23.16
C95M
1
man
polymer
18.015
water
96
nat
water
no
no
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGMTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
1
99
11676
Human immunodeficiency virus 1
562
Escherichia coli
Lentivirus
Escherichia
sample
105
203
11676
Human immunodeficiency virus 1
562
Escherichia coli
2
2.19
43.91
entity_src_gen
software
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Source and taxonomy
Database references
Data collection
1
0
2000-11-15
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-08-09
1
4
2021-10-27
1
5
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2000-11-07
REL
HOH
water
H2O
200
2
HOH
HOH
200
A
H2O
201
2
HOH
HOH
201
A
H2O
202
2
HOH
HOH
202
A
H2O
203
2
HOH
HOH
203
A
H2O
204
2
HOH
HOH
204
A
H2O
205
2
HOH
HOH
205
A
H2O
206
2
HOH
HOH
206
A
H2O
207
2
HOH
HOH
207
A
H2O
208
2
HOH
HOH
208
A
H2O
209
2
HOH
HOH
209
A
H2O
210
2
HOH
HOH
210
A
H2O
211
2
HOH
HOH
211
A
H2O
212
2
HOH
HOH
212
A
H2O
213
2
HOH
HOH
213
A
H2O
214
2
HOH
HOH
214
A
H2O
215
2
HOH
HOH
215
A
H2O
216
2
HOH
HOH
216
A
H2O
217
2
HOH
HOH
217
A
H2O
218
2
HOH
HOH
218
A
H2O
219
2
HOH
HOH
219
A
H2O
220
2
HOH
HOH
220
A
H2O
221
2
HOH
HOH
221
A
H2O
223
2
HOH
HOH
223
A
H2O
224
2
HOH
HOH
224
A
H2O
225
2
HOH
HOH
225
A
H2O
226
2
HOH
HOH
226
A
H2O
227
2
HOH
HOH
227
A
H2O
228
2
HOH
HOH
228
A
H2O
229
2
HOH
HOH
229
A
H2O
230
2
HOH
HOH
230
A
H2O
231
2
HOH
HOH
231
A
H2O
232
2
HOH
HOH
232
A
H2O
234
2
HOH
HOH
234
A
H2O
235
2
HOH
HOH
235
A
H2O
236
2
HOH
HOH
236
A
H2O
237
2
HOH
HOH
237
A
H2O
238
2
HOH
HOH
238
A
H2O
239
2
HOH
HOH
239
A
H2O
240
2
HOH
HOH
240
A
H2O
242
2
HOH
HOH
242
A
H2O
243
2
HOH
HOH
243
A
H2O
244
2
HOH
HOH
244
A
H2O
245
2
HOH
HOH
245
A
H2O
246
2
HOH
HOH
246
A
H2O
247
2
HOH
HOH
247
A
H2O
248
2
HOH
HOH
248
A
H2O
249
2
HOH
HOH
249
A
H2O
250
2
HOH
HOH
250
A
H2O
251
2
HOH
HOH
251
A
H2O
253
2
HOH
HOH
253
A
H2O
254
2
HOH
HOH
254
A
H2O
255
2
HOH
HOH
255
A
H2O
257
2
HOH
HOH
257
A
H2O
258
2
HOH
HOH
258
A
H2O
259
2
HOH
HOH
259
A
H2O
260
2
HOH
HOH
260
A
H2O
261
2
HOH
HOH
261
A
H2O
262
2
HOH
HOH
262
A
H2O
263
2
HOH
HOH
263
A
H2O
264
2
HOH
HOH
264
A
H2O
265
2
HOH
HOH
265
A
H2O
266
2
HOH
HOH
266
A
H2O
267
2
HOH
HOH
267
A
H2O
268
2
HOH
HOH
268
A
H2O
269
2
HOH
HOH
269
A
H2O
270
2
HOH
HOH
270
A
H2O
271
2
HOH
HOH
271
A
H2O
272
2
HOH
HOH
272
A
H2O
273
2
HOH
HOH
273
A
H2O
274
2
HOH
HOH
274
A
H2O
275
2
HOH
HOH
275
A
H2O
276
2
HOH
HOH
276
A
H2O
277
2
HOH
HOH
277
A
H2O
278
2
HOH
HOH
278
A
H2O
279
2
HOH
HOH
279
A
H2O
280
2
HOH
HOH
280
A
H2O
281
2
HOH
HOH
281
A
H2O
282
2
HOH
HOH
282
A
H2O
283
2
HOH
HOH
283
A
H2O
284
2
HOH
HOH
284
A
H2O
285
2
HOH
HOH
285
A
H2O
286
2
HOH
HOH
286
A
H2O
287
2
HOH
HOH
287
A
H2O
288
2
HOH
HOH
288
A
H2O
289
2
HOH
HOH
289
A
H2O
290
2
HOH
HOH
290
A
H2O
291
2
HOH
HOH
291
A
H2O
292
2
HOH
HOH
292
A
H2O
293
2
HOH
HOH
293
A
H2O
294
2
HOH
HOH
294
A
H2O
296
2
HOH
HOH
296
A
H2O
297
2
HOH
HOH
297
A
H2O
298
2
HOH
HOH
298
A
H2O
299
2
HOH
HOH
299
A
H2O
300
2
HOH
HOH
300
A
H2O
301
2
HOH
HOH
301
A
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
VAL
3
n
3
VAL
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
MET
95
n
95
MET
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
n
100
996
A
n
101
997
A
n
102
998
A
n
103
999
A
n
104
1000
A
PRO
1001
n
105
PRO
1001
A
GLN
1002
n
106
GLN
1002
A
VAL
1003
n
107
VAL
1003
A
THR
1004
n
108
THR
1004
A
LEU
1005
n
109
LEU
1005
A
TRP
1006
n
110
TRP
1006
A
GLN
1007
n
111
GLN
1007
A
ARG
1008
n
112
ARG
1008
A
PRO
1009
n
113
PRO
1009
A
LEU
1010
n
114
LEU
1010
A
VAL
1011
n
115
VAL
1011
A
THR
1012
n
116
THR
1012
A
ILE
1013
n
117
ILE
1013
A
LYS
1014
n
118
LYS
1014
A
ILE
1015
n
119
ILE
1015
A
GLY
1016
n
120
GLY
1016
A
GLY
1017
n
121
GLY
1017
A
GLN
1018
n
122
GLN
1018
A
LEU
1019
n
123
LEU
1019
A
LYS
1020
n
124
LYS
1020
A
GLU
1021
n
125
GLU
1021
A
ALA
1022
n
126
ALA
1022
A
LEU
1023
n
127
LEU
1023
A
LEU
1024
n
128
LEU
1024
A
ASP
1025
n
129
ASP
1025
A
THR
1026
n
130
THR
1026
A
GLY
1027
n
131
GLY
1027
A
ALA
1028
n
132
ALA
1028
A
ASP
1029
n
133
ASP
1029
A
ASP
1030
n
134
ASP
1030
A
THR
1031
n
135
THR
1031
A
VAL
1032
n
136
VAL
1032
A
LEU
1033
n
137
LEU
1033
A
GLU
1034
n
138
GLU
1034
A
GLU
1035
n
139
GLU
1035
A
MET
1036
n
140
MET
1036
A
SER
1037
n
141
SER
1037
A
LEU
1038
n
142
LEU
1038
A
PRO
1039
n
143
PRO
1039
A
GLY
1040
n
144
GLY
1040
A
ARG
1041
n
145
ARG
1041
A
TRP
1042
n
146
TRP
1042
A
LYS
1043
n
147
LYS
1043
A
PRO
1044
n
148
PRO
1044
A
LYS
1045
n
149
LYS
1045
A
MET
1046
n
150
MET
1046
A
ILE
1047
n
151
ILE
1047
A
GLY
1048
n
152
GLY
1048
A
GLY
1049
n
153
GLY
1049
A
ILE
1050
n
154
ILE
1050
A
GLY
1051
n
155
GLY
1051
A
GLY
1052
n
156
GLY
1052
A
PHE
1053
n
157
PHE
1053
A
ILE
1054
n
158
ILE
1054
A
LYS
1055
n
159
LYS
1055
A
VAL
1056
n
160
VAL
1056
A
ARG
1057
n
161
ARG
1057
A
GLN
1058
n
162
GLN
1058
A
TYR
1059
n
163
TYR
1059
A
ASP
1060
n
164
ASP
1060
A
GLN
1061
n
165
GLN
1061
A
ILE
1062
n
166
ILE
1062
A
LEU
1063
n
167
LEU
1063
A
ILE
1064
n
168
ILE
1064
A
GLU
1065
n
169
GLU
1065
A
ILE
1066
n
170
ILE
1066
A
CYS
1067
n
171
CYS
1067
A
GLY
1068
n
172
GLY
1068
A
HIS
1069
n
173
HIS
1069
A
LYS
1070
n
174
LYS
1070
A
ALA
1071
n
175
ALA
1071
A
ILE
1072
n
176
ILE
1072
A
GLY
1073
n
177
GLY
1073
A
THR
1074
n
178
THR
1074
A
VAL
1075
n
179
VAL
1075
A
LEU
1076
n
180
LEU
1076
A
VAL
1077
n
181
VAL
1077
A
GLY
1078
n
182
GLY
1078
A
PRO
1079
n
183
PRO
1079
A
THR
1080
n
184
THR
1080
A
PRO
1081
n
185
PRO
1081
A
VAL
1082
n
186
VAL
1082
A
ASN
1083
n
187
ASN
1083
A
ILE
1084
n
188
ILE
1084
A
ILE
1085
n
189
ILE
1085
A
GLY
1086
n
190
GLY
1086
A
ARG
1087
n
191
ARG
1087
A
ASN
1088
n
192
ASN
1088
A
LEU
1089
n
193
LEU
1089
A
LEU
1090
n
194
LEU
1090
A
THR
1091
n
195
THR
1091
A
GLN
1092
n
196
GLN
1092
A
ILE
1093
n
197
ILE
1093
A
GLY
1094
n
198
GLY
1094
A
CYS
1095
n
199
CYS
1095
A
THR
1096
n
200
THR
1096
A
LEU
1097
n
201
LEU
1097
A
ASN
1098
n
202
ASN
1098
A
PHE
1099
n
203
PHE
1099
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
3
A
N
VAL
3
A
O
LEU
1097
A
O
LEU
201
A
O
ASN
1098
A
O
ASN
202
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
A
O
VAL
1003
A
O
VAL
107
A
N
GLY
49
A
N
GLY
49
A
O
GLY
52
A
O
GLY
52
A
O
ILE
66
A
O
ILE
66
A
N
HIS
69
A
N
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
LEU
33
A
N
LEU
33
A
O
VAL
32
A
O
VAL
32
A
N
ILE
84
A
N
ILE
84
A
N
ILE
85
A
N
ILE
85
A
O
LEU
23
A
O
LEU
23
A
O
ALA
22
A
O
ALA
22
A
N
VAL
11
A
N
VAL
11
A
O
LYS
14
A
O
LYS
14
A
N
GLU
65
A
N
GLU
65
A
N
ILE
1066
A
N
ILE
170
A
O
HIS
1069
A
O
HIS
173
A
O
LEU
1076
A
O
LEU
180
A
N
LEU
1033
A
N
LEU
137
A
O
VAL
1032
A
O
VAL
136
A
N
ILE
1084
A
N
ILE
188
A
N
ILE
1085
A
N
ILE
189
A
O
LEU
1023
A
O
LEU
127
A
N
ALA
1022
A
N
ALA
126
A
O
VAL
1011
A
O
VAL
115
A
O
LYS
1014
A
O
LYS
118
A
N
GLU
1065
A
N
GLU
169
1
A
GLY
996
A
GLY
100
1
Y
1
A
GLY
997
A
GLY
101
1
Y
1
A
SER
998
A
SER
102
1
Y
1
A
SER
999
A
SER
103
1
Y
1
A
GLY
1000
A
GLY
104
1
Y
28.3
0.2840000
0.1950000
1.9
8.0
43302
14318
10% reflections randomly chosen by X-PLOR
1
MOLECULAR REPLACEMENT
1.9
8.0
96
1611
0
0
1515
1.9
20.0
1G6L
43302
14318
2.0
1.0
0.0550000
1
95.8
phasing
AMoRE
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
1.9A CRYSTAL STRUCTURE OF TETHERED HIV-1 PROTEASE
1
N
N
2
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLY
1086
A
GLY
190
HELX_P
A
THR
1091
A
THR
195
1
2
6
HYDROLASE
HYDROLASE
POL_HV1H2
UNP
1
P04585
57
155
1G6L
1
99
P04585
A
1
1
99
57
155
1G6L
1001
1099
P04585
A
1
105
203
1
CYS
engineered mutation
MET
95
1G6L
A
P04585
UNP
151
95
1
linker
GLY
996
1G6L
A
P04585
UNP
100
1
linker
GLY
997
1G6L
A
P04585
UNP
101
1
linker
SER
998
1G6L
A
P04585
UNP
102
1
linker
SER
999
1G6L
A
P04585
UNP
103
1
linker
GLY
1000
1G6L
A
P04585
UNP
104
4
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
THR
4
A
THR
4
A
THR
1096
A
THR
200
A
ASN
1098
A
ASN
202
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
A
GLN
1002
A
GLN
106
A
THR
1004
A
THR
108
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
GLY
78
A
GLY
78
A
VAL
32
A
VAL
32
A
GLU
34
A
GLU
34
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
GLY
1052
A
GLY
156
A
ILE
1066
A
ILE
170
A
HIS
1069
A
HIS
173
A
VAL
1077
A
VAL
181
A
VAL
1032
A
VAL
136
A
LEU
1033
A
LEU
137
A
ILE
1084
A
ILE
188
A
ILE
1085
A
ILE
189
A
GLN
1018
A
GLN
122
A
LEU
1024
A
LEU
128
A
LEU
1010
A
LEU
114
A
ILE
1015
A
ILE
119
A
GLY
1052
A
GLY
156
A
ILE
1066
A
ILE
170
169
P 61