0.015615 0.000000 0.000000 0.000000 0.015615 0.000000 0.000000 0.000000 0.015615 0.00000 0.00000 0.00000 Ogihara, N.L. Ghirlanda, G. Bryson, J.W. Gingery, M. DeGrado, W.F. Eisenberg, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 64.040 64.040 64.040 C3 H7 N O2 89.093 y ALANINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C2 H F3 O2 114.023 trifluoroacetic acid non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N O N 22 N N N 23 N O N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N C N 40 N C N 41 N O N 42 N O N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N N N 54 N C N 55 N C N 56 N O N 57 N O N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N O N 64 N H N 65 N H N 66 N N N 67 S C N 68 N C N 69 N O N 70 N C N 71 N C N 72 N C N 73 N C N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N C N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 S C N 115 N C N 116 N O N 117 N C Y 118 N C Y 119 N C Y 120 N C Y 121 N C Y 122 N C Y 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N S N 168 N O N 169 N O N 170 N O N 171 N O N 172 N C N 173 N C N 174 N O N 175 N F N 176 N F N 177 N F N 178 N O N 179 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing Y 117 N doub Y 118 N sing Y 119 N sing N 120 N sing Y 121 N doub N 122 N sing Y 123 N doub N 124 N sing Y 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 98 1404 1409 10.1073/pnas.98.4.1404 11171963 Design of three-dimensional domain-swapped dimers and fibrous oligomers. 2001 10.2210/pdb1g6u/pdb pdb_00001g6u 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 mirrors IMAGE PLATE RIGAKU RAXIS IIC mirrors SINGLE WAVELENGTH M x-ray 1 0.975 1.0 X12B NSLS 0.975 SYNCHROTRON NSLS BEAMLINE X12B 5131.009 DOMAIN SWAPPED DIMER 2 syn polymer 96.063 SULFATE ION 1 syn non-polymer 114.023 trifluoroacetic acid 1 syn non-polymer 18.015 water 85 nat water no no SLAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALKG SLAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALKG A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.13 42.32 VAPOR DIFFUSION 6.5 100 mM MES, pH 6.5, 100 mM NaCl, 2.6 M ammonium sulfate, 1% dioxane, VAPOR DIFFUSION, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Data collection Database references Derived calculations 1 0 2001-02-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-11-07 REL REL SO4 SULFATE ION TFA trifluoroacetic acid HOH water The peptide was chemically synthesized. sample SO4 201 2 SO4 SO4 201 B TFA 200 3 TFA TFA 200 B HOH 101 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 107 4 HOH HOH 107 A HOH 108 4 HOH HOH 108 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 120 4 HOH HOH 120 A HOH 124 4 HOH HOH 124 A HOH 128 4 HOH HOH 128 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 148 4 HOH HOH 148 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 154 4 HOH HOH 154 A HOH 155 4 HOH HOH 155 A HOH 157 4 HOH HOH 157 A HOH 159 4 HOH HOH 159 A HOH 161 4 HOH HOH 161 A HOH 164 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A HOH 167 4 HOH HOH 167 A HOH 170 4 HOH HOH 170 A HOH 172 4 HOH HOH 172 A HOH 173 4 HOH HOH 173 A HOH 178 4 HOH HOH 178 A HOH 179 4 HOH HOH 179 A HOH 180 4 HOH HOH 180 A HOH 181 4 HOH HOH 181 A HOH 182 4 HOH HOH 182 A HOH 183 4 HOH HOH 183 A HOH 103 4 HOH HOH 103 B HOH 106 4 HOH HOH 106 B HOH 109 4 HOH HOH 109 B HOH 114 4 HOH HOH 114 B HOH 119 4 HOH HOH 119 B HOH 121 4 HOH HOH 121 B HOH 122 4 HOH HOH 122 B HOH 123 4 HOH HOH 123 B HOH 125 4 HOH HOH 125 B HOH 126 4 HOH HOH 126 B HOH 127 4 HOH HOH 127 B HOH 132 4 HOH HOH 132 B HOH 133 4 HOH HOH 133 B HOH 136 4 HOH HOH 136 B HOH 137 4 HOH HOH 137 B HOH 141 4 HOH HOH 141 B HOH 142 4 HOH HOH 142 B HOH 145 4 HOH HOH 145 B HOH 146 4 HOH HOH 146 B HOH 147 4 HOH HOH 147 B HOH 149 4 HOH HOH 149 B HOH 156 4 HOH HOH 156 B HOH 158 4 HOH HOH 158 B HOH 160 4 HOH HOH 160 B HOH 162 4 HOH HOH 162 B HOH 163 4 HOH HOH 163 B HOH 166 4 HOH HOH 166 B HOH 168 4 HOH HOH 168 B HOH 169 4 HOH HOH 169 B HOH 171 4 HOH HOH 171 B HOH 174 4 HOH HOH 174 B HOH 175 4 HOH HOH 175 B HOH 176 4 HOH HOH 176 B HOH 177 4 HOH HOH 177 B HOH 184 4 HOH HOH 184 B HOH 185 4 HOH HOH 185 B SER 1 n 1 SER 1 A LEU 2 n 2 LEU 2 A ALA 3 n 3 ALA 3 A ALA 4 n 4 ALA 4 A LEU 5 n 5 LEU 5 A LYS 6 n 6 LYS 6 A SER 7 n 7 SER 7 A GLU 8 n 8 GLU 8 A LEU 9 n 9 LEU 9 A GLN 10 n 10 GLN 10 A ALA 11 n 11 ALA 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A LYS 14 n 14 LYS 14 A GLU 15 n 15 GLU 15 A GLY 16 n 16 GLY 16 A PHE 17 n 17 PHE 17 A SER 18 n 18 SER 18 A PRO 19 n 19 PRO 19 A GLU 20 n 20 GLU 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ALA 24 n 24 ALA 24 A LEU 25 n 25 LEU 25 A GLU 26 n 26 GLU 26 A SER 27 n 27 SER 27 A GLU 28 n 28 GLU 28 A LEU 29 n 29 LEU 29 A GLN 30 n 30 GLN 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A GLU 33 n 33 GLU 33 A LYS 34 n 34 LYS 34 A LYS 35 n 35 LYS 35 A LEU 36 n 36 LEU 36 A ALA 37 n 37 ALA 37 A ALA 38 n 38 ALA 38 A LEU 39 n 39 LEU 39 A LYS 40 n 40 LYS 40 A SER 41 n 41 SER 41 A LYS 42 n 42 LYS 42 A LEU 43 n 43 LEU 43 A GLN 44 n 44 GLN 44 A ALA 45 n 45 ALA 45 A LEU 46 n 46 LEU 46 A LYS 47 n 47 LYS 47 A GLY 48 n 48 GLY 48 A SER 1 n 1 SER 1 B LEU 2 n 2 LEU 2 B ALA 3 n 3 ALA 3 B ALA 4 n 4 ALA 4 B LEU 5 n 5 LEU 5 B LYS 6 n 6 LYS 6 B SER 7 n 7 SER 7 B GLU 8 n 8 GLU 8 B LEU 9 n 9 LEU 9 B GLN 10 n 10 GLN 10 B ALA 11 n 11 ALA 11 B LEU 12 n 12 LEU 12 B LYS 13 n 13 LYS 13 B LYS 14 n 14 LYS 14 B GLU 15 n 15 GLU 15 B GLY 16 n 16 GLY 16 B PHE 17 n 17 PHE 17 B SER 18 n 18 SER 18 B PRO 19 n 19 PRO 19 B GLU 20 n 20 GLU 20 B GLU 21 n 21 GLU 21 B LEU 22 n 22 LEU 22 B ALA 23 n 23 ALA 23 B ALA 24 n 24 ALA 24 B LEU 25 n 25 LEU 25 B GLU 26 n 26 GLU 26 B SER 27 n 27 SER 27 B GLU 28 n 28 GLU 28 B LEU 29 n 29 LEU 29 B GLN 30 n 30 GLN 30 B ALA 31 n 31 ALA 31 B LEU 32 n 32 LEU 32 B GLU 33 n 33 GLU 33 B LYS 34 n 34 LYS 34 B LYS 35 n 35 LYS 35 B LEU 36 n 36 LEU 36 B ALA 37 n 37 ALA 37 B ALA 38 n 38 ALA 38 B LEU 39 n 39 LEU 39 B LYS 40 n 40 LYS 40 B SER 41 n 41 SER 41 B LYS 42 n 42 LYS 42 B LEU 43 n 43 LEU 43 B GLN 44 n 44 GLN 44 B ALA 45 n 45 ALA 45 B LEU 46 n 46 LEU 46 B LYS 47 n 47 LYS 47 B GLY 48 n 48 GLY 48 B author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 6 hexameric 2060 -24 6150 11190 -102 13450 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7_564 -z+1/2,-x+1,y-1/2 crystal symmetry operation 32.0200000000 64.0400000000 -32.0200000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 10_655 -y+1,z+1/2,-x+1/2 crystal symmetry operation 64.0400000000 32.0200000000 32.0200000000 1 B SO4 201 C SO4 1 B SO4 201 C SO4 1 A O GLY 48 A O GLY 48 1 Y 1 B O1 SO4 201 C O1 SO4 1 1 N 1 B O3 SO4 201 C O3 SO4 1 1 N 1 B B S O2 SO4 SO4 201 201 1.41 1_555 7_564 1 A SER 18 14.93 76.33 1 B SER 18 18.66 69.76 16.5 0.00 0.00 0.00 0.00 0.00 0.00 0.2410000 0.006 0.1980000 0.2020000 0.1980000 1.48 30.00 1476 14554 14554 10.1 97.9 RANDOM 10000000.00 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 MIR Engh & Huber 0.20 0.17 5.00 0.20 0.18 1.48 30.00 85 813 10 0 718 0.018 1.8 16.0 1.54 0.82 1.50 1.21 2.00 3.66 2.00 6.54 2.50 0.3140000 0.022 0.2850000 1.57 196 1933 1934 6 9.2 88 17.5 1.48 30.00 1G6U 14554 14554 0.0 0.0 0.0820000 1 5.5 97.9 0.2890000 1.48 1.57 2129 1 88 model building DM refinement X-PLOR 3.820 data reduction DENZO data scaling SCALEPACK phasing DM CRYSTAL STRUCTURE OF A DOMAIN SWAPPED DIMER 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N A SER 1 A SER 1 HELX_P A GLU 15 A GLU 15 1 1 15 A SER 18 A SER 18 HELX_P A GLY 48 A GLY 48 1 2 31 B SER 1 B SER 1 HELX_P B LYS 14 B LYS 14 1 3 14 B SER 18 B SER 18 HELX_P B GLY 48 B GLY 48 1 4 31 DE NOVO PROTEIN designed three helix bundle, DE NOVO PROTEIN 1G6U PDB 1 1G6U 1 48 1G6U 1 48 1G6U A 1 1 48 1 48 1G6U 1 48 1G6U B 1 1 48 BINDING SITE FOR RESIDUE SO4 B 201 B SO4 201 Software 1 BINDING SITE FOR RESIDUE TFA B 200 B TFA 200 Software 7 B LYS 35 B LYS 35 1 10_655 A SER 1 A SER 1 7 1_555 A LEU 2 A LEU 2 7 1_555 A ALA 3 A ALA 3 7 1_555 A HOH 108 E HOH 7 5_555 B SER 1 B SER 1 7 1_555 B LEU 2 B LEU 2 7 1_555 B ALA 3 B ALA 3 7 1_555 198 P 21 3