0.038760 0.000000 0.000000 0.000000 0.025445 0.000000 0.000000 0.000000 0.015385 0.00000 0.00000 0.00000 Tsunoda, M. Karino, N. Ueno, Y. Matsuda, A. Takenaka, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.800 39.300 65.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C10 H13 N2 O9 P 336.192 n 2'-DEOXY-5-FORMYLURIDINE 5'-(DIHYDROGEN PHOSPHATE) DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N K N 148 N MG N 149 N O N 150 N P N 151 N O N 152 N O N 153 N O N 154 N C N 155 R C N 156 N O N 157 S C N 158 N O N 159 N C N 160 R C N 161 N N N 162 N C N 163 N O N 164 N N N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N doub N 187 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 345 348 10.1107/S0907444900017583 11173500 Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers? 2001 10.2210/pdb1g75/pdb pdb_00001g75 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 DIFFRACTOMETER 2000-06-03 WEISSENBERG SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-18B Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 3677.376 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' 2 syn polymer 39.098 POTASSIUM ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 150 nat water no yes (DC)(DG)(DC)(DG)(DA)(DA)(DT)(UFR)(DC)(DG)(DC)(DG) CGCGAATUCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 2.15 42.89 VAPOR DIFFUSION, SITTING DROP 6.5 MPD, spermine, magnesium chloride, potassium chloride, sodium chloride, cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 MPD 1 spermine 1 MgCl2 1 KCl 1 NaCl 1 cacodylate 1 MPD 2 5.679 1 19 A 1 B 24 0.368 A_DC1:DG24_B 1 -19.288 0.315 0.161 -0.198 9.158 1 19 A 2 B 23 -2.468 A_DG2:DC23_B 2 -12.510 -0.223 0.565 -0.217 -0.719 1 19 A 3 B 22 0.549 A_DC3:DG22_B 3 -8.981 0.196 0.220 -0.213 11.409 1 19 A 4 B 21 2.806 A_DG4:DC21_B 4 -13.022 -0.258 0.002 -0.106 9.346 1 20 A 5 B 20 1.653 A_DA5:UFR20_B 5 -17.315 0.007 0.309 -0.113 0.310 1 20 A 6 B 19 6.027 A_DA6:DT19_B 6 -20.742 0.023 0.245 -0.171 -4.280 1 20 A 7 B 18 4.422 A_DT7:DA18_B 7 -19.082 -0.058 0.227 -0.179 -6.703 1 20 A 8 B 17 3.780 A_UFR8:DA17_B 8 -13.497 -0.006 0.201 -0.158 -12.772 1 19 A 9 B 16 -1.037 A_DC9:DG16_B 9 -8.472 0.204 0.096 -0.163 7.819 1 19 A 10 B 15 2.283 A_DG10:DC15_B 10 -7.653 -0.014 0.267 -0.199 0.815 1 19 A 11 B 14 -4.651 A_DC11:DG14_B 11 -21.186 0.005 0.397 -0.216 7.711 1 19 A 12 B 13 -2.139 A_DG12:DC13_B 12 -7.936 -0.145 0.600 -0.078 3.076 35.522 A A 1 2 12.792 B B 24 23 3.154 7.729 -0.118 0.005 AA_DC1DG2:DC23DG24_BB 1 -4.165 6.893 34.454 -1.085 -0.396 3.469 42.612 A A 2 3 -11.853 B B 23 22 3.590 -8.550 0.582 0.475 AA_DG2DC3:DG22DC23_BB 2 3.831 -5.311 41.617 1.595 -0.379 3.089 28.851 A A 3 4 22.946 B B 22 21 3.056 11.132 -0.248 0.777 AA_DC3DG4:DC21DG22_BB 3 2.519 -5.192 26.541 -0.873 1.048 3.145 38.098 A A 4 5 2.327 B B 21 20 3.161 1.518 0.031 -0.213 AA_DG4DA5:UFR20DC21_BB 4 -1.981 3.037 38.019 -0.511 -0.289 3.340 35.647 A A 5 6 2.437 B B 20 19 3.366 1.491 0.048 -0.602 AA_DA5DA6:DT19UFR20_BB 5 0.587 -0.959 35.612 -1.205 0.010 3.261 32.122 A A 6 7 -2.503 B B 19 18 3.236 -1.385 0.009 -0.678 AA_DA6DT7:DA18DT19_BB 6 0.263 -0.476 32.091 -0.978 0.030 3.238 35.185 A A 7 8 -3.577 B B 18 17 3.212 -2.161 -0.006 -0.530 AA_DT7UFR8:DA17DA18_BB 7 0.119 -0.197 35.121 -0.558 0.028 3.321 40.576 A A 8 9 -4.979 B B 17 16 3.318 -3.448 -0.292 -0.399 AA_UFR8DC9:DG16DA17_BB 8 2.147 -3.100 40.381 -0.185 0.664 2.934 27.985 A A 9 10 10.619 B B 16 15 2.898 5.101 0.543 0.786 AA_DC9DG10:DC15DG16_BB 9 -2.441 5.081 27.419 0.536 -1.644 3.345 43.602 A A 10 11 -16.084 B B 15 14 3.483 -11.793 -1.231 0.463 AA_DG10DC11:DG14DC15_BB 10 -4.285 5.844 41.842 1.833 1.218 3.102 34.828 A A 11 12 5.557 B B 14 13 3.097 3.321 0.339 0.291 AA_DC11DG12:DC13DG14_BB 11 -0.841 1.408 34.665 0.006 -0.687 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2001-02-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BD0044 contains the same DNA under different crystallization conditions. BD0045 contains the same DNA under different crystallization conditions. BD0046 contains the same DNA under different crystallization conditions. RCSB Y RCSB 2000-11-09 REL K POTASSIUM ION MG MAGNESIUM ION HOH water 355D PDB ENTRY 355D PDB experimental model K 26 2 K K 26 A MO6 25 3 MG MG 25 A HOH 27 4 HOH HOH 27 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 48 4 HOH HOH 48 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 53 4 HOH HOH 53 A HOH 54 4 HOH HOH 54 A HOH 57 4 HOH HOH 57 A HOH 61 4 HOH HOH 61 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 66 4 HOH HOH 66 A HOH 69 4 HOH HOH 69 A HOH 71 4 HOH HOH 71 A HOH 74 4 HOH HOH 74 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 91 4 HOH HOH 91 A HOH 93 4 HOH HOH 93 A HOH 95 4 HOH HOH 95 A HOH 96 4 HOH HOH 96 A HOH 97 4 HOH HOH 97 A HOH 99 4 HOH HOH 99 A HOH 107 4 HOH HOH 107 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 112 4 HOH HOH 112 A HOH 114 4 HOH HOH 114 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 122 4 HOH HOH 122 A HOH 124 4 HOH HOH 124 A HOH 127 4 HOH HOH 127 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 137 4 HOH HOH 137 A HOH 140 4 HOH HOH 140 A HOH 142 4 HOH HOH 142 A HOH 145 4 HOH HOH 145 A HOH 147 4 HOH HOH 147 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 164 4 HOH HOH 164 A HOH 166 4 HOH HOH 166 A MO6 25 4 HOH HOH 171 A MO6 25 4 HOH HOH 172 A MO6 25 4 HOH HOH 173 A MO6 25 4 HOH HOH 174 A MO6 25 4 HOH HOH 175 A MO6 25 4 HOH HOH 176 A HOH 28 4 HOH HOH 28 B HOH 47 4 HOH HOH 47 B HOH 49 4 HOH HOH 49 B HOH 52 4 HOH HOH 52 B HOH 55 4 HOH HOH 55 B HOH 56 4 HOH HOH 56 B HOH 58 4 HOH HOH 58 B HOH 59 4 HOH HOH 59 B HOH 60 4 HOH HOH 60 B HOH 62 4 HOH HOH 62 B HOH 63 4 HOH HOH 63 B HOH 67 4 HOH HOH 67 B HOH 68 4 HOH HOH 68 B HOH 70 4 HOH HOH 70 B HOH 72 4 HOH HOH 72 B HOH 73 4 HOH HOH 73 B HOH 75 4 HOH HOH 75 B HOH 76 4 HOH HOH 76 B HOH 77 4 HOH HOH 77 B HOH 78 4 HOH HOH 78 B HOH 79 4 HOH HOH 79 B HOH 80 4 HOH HOH 80 B HOH 81 4 HOH HOH 81 B HOH 88 4 HOH HOH 88 B HOH 89 4 HOH HOH 89 B HOH 90 4 HOH HOH 90 B HOH 92 4 HOH HOH 92 B HOH 94 4 HOH HOH 94 B HOH 98 4 HOH HOH 98 B HOH 100 4 HOH HOH 100 B HOH 101 4 HOH HOH 101 B HOH 102 4 HOH HOH 102 B HOH 103 4 HOH HOH 103 B HOH 104 4 HOH HOH 104 B HOH 105 4 HOH HOH 105 B HOH 106 4 HOH HOH 106 B HOH 108 4 HOH HOH 108 B HOH 111 4 HOH HOH 111 B HOH 113 4 HOH HOH 113 B HOH 115 4 HOH HOH 115 B HOH 119 4 HOH HOH 119 B HOH 120 4 HOH HOH 120 B HOH 121 4 HOH HOH 121 B HOH 123 4 HOH HOH 123 B HOH 125 4 HOH HOH 125 B HOH 126 4 HOH HOH 126 B HOH 128 4 HOH HOH 128 B HOH 131 4 HOH HOH 131 B HOH 132 4 HOH HOH 132 B HOH 133 4 HOH HOH 133 B HOH 136 4 HOH HOH 136 B HOH 138 4 HOH HOH 138 B HOH 139 4 HOH HOH 139 B HOH 141 4 HOH HOH 141 B HOH 143 4 HOH HOH 143 B HOH 144 4 HOH HOH 144 B HOH 146 4 HOH HOH 146 B HOH 148 4 HOH HOH 148 B HOH 149 4 HOH HOH 149 B HOH 154 4 HOH HOH 154 B HOH 155 4 HOH HOH 155 B HOH 156 4 HOH HOH 156 B HOH 159 4 HOH HOH 159 B HOH 160 4 HOH HOH 160 B HOH 161 4 HOH HOH 161 B HOH 165 4 HOH HOH 165 B HOH 167 4 HOH HOH 167 B HOH 168 4 HOH HOH 168 B HOH 169 4 HOH HOH 169 B HOH 170 4 HOH HOH 170 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A +U 8 n 8 UFR 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B +U 20 n 8 UFR 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A DT 7 A O2 DT 7 1_555 A K 26 C K K 1_555 A HOH 54 E O HOH 1_555 110.7 A DT 7 A O2 DT 7 1_555 A K 26 C K K 1_555 A HOH 140 E O HOH 1_555 137.3 A HOH 54 E O HOH 1_555 A K 26 C K K 1_555 A HOH 140 E O HOH 1_555 73.5 A DT 7 A O2 DT 7 1_555 A K 26 C K K 1_555 B DT 19 B O2 DT 7 1_555 79.5 A HOH 54 E O HOH 1_555 A K 26 C K K 1_555 B DT 19 B O2 DT 7 1_555 96.5 A HOH 140 E O HOH 1_555 A K 26 C K K 1_555 B DT 19 B O2 DT 7 1_555 143.2 A DT 7 A O2 DT 7 1_555 A K 26 C K K 1_555 B HOH 72 F O HOH 1_555 95.1 A HOH 54 E O HOH 1_555 A K 26 C K K 1_555 B HOH 72 F O HOH 1_555 146.8 A HOH 140 E O HOH 1_555 A K 26 C K K 1_555 B HOH 72 F O HOH 1_555 73.3 B DT 19 B O2 DT 7 1_555 A K 26 C K K 1_555 B HOH 72 F O HOH 1_555 108.9 A HOH 171 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 172 E O HOH 1_555 94.2 A HOH 171 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 173 E O HOH 1_555 91.8 A HOH 172 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 173 E O HOH 1_555 86.0 A HOH 171 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 174 E O HOH 1_555 86.7 A HOH 172 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 174 E O HOH 1_555 174.4 A HOH 173 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 174 E O HOH 1_555 88.5 A HOH 171 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 175 E O HOH 1_555 90.3 A HOH 172 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 175 E O HOH 1_555 89.5 A HOH 173 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 175 E O HOH 1_555 175.1 A HOH 174 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 175 E O HOH 1_555 96.1 A HOH 171 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 173.5 A HOH 172 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 91.9 A HOH 173 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 86.4 A HOH 174 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 87.0 A HOH 175 E O HOH 1_555 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 92.0 A UFR 8 A UFR 8 DU B UFR 20 B UFR 8 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 9 0.068 SIDE CHAIN 0.236 0.21 1.57 50 967 9313 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 355D 0.22 0.18 5.00 0.14 0.12 1.57 50 144 641 13 484 0 0.004 21.7 1.26 0.8 0.263 0.021 0.235 1.67 155 1.57 50 1G75 90663 9502 -3 0.031 1 9.54 97.1 0.266 1.57 1.60 89.9 phasing AMoRE refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N covale 1.599 both A DT 7 A O3' DT 7 1_555 A UFR 8 A P UFR 8 1_555 covale 1.603 one A UFR 8 A O3' UFR 8 1_555 A DC 9 A P DC 9 1_555 covale 1.603 both B DT 19 B O3' DT 7 1_555 B UFR 20 B P UFR 8 1_555 covale 1.600 one B UFR 20 B O3' UFR 8 1_555 B DC 21 B P DC 9 1_555 metalc 2.741 A DT 7 A O2 DT 7 1_555 A K 26 C K K 1_555 metalc 2.093 A MG 25 D MG MG 1_555 A HOH 171 E O HOH 1_555 metalc 2.062 A MG 25 D MG MG 1_555 A HOH 172 E O HOH 1_555 metalc 2.117 A MG 25 D MG MG 1_555 A HOH 173 E O HOH 1_555 metalc 2.097 A MG 25 D MG MG 1_555 A HOH 174 E O HOH 1_555 metalc 2.103 A MG 25 D MG MG 1_555 A HOH 175 E O HOH 1_555 metalc 2.025 A MG 25 D MG MG 1_555 A HOH 176 E O HOH 1_555 metalc 2.627 A K 26 C K K 1_555 A HOH 54 E O HOH 1_555 metalc 2.661 A K 26 C K K 1_555 A HOH 140 E O HOH 1_555 metalc 2.705 A K 26 C K K 1_555 B DT 19 B O2 DT 7 1_555 metalc 2.699 A K 26 C K K 1_555 B HOH 72 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B UFR 20 B N3 UFR 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B UFR 20 B O4 UFR 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A UFR 8 A N3 UFR 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A UFR 8 A O4 UFR 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA MODIFIED NUCLEOTIDE, FORMYLURIDINE, DNA DAMAGE, B-DNA, DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, DNA 1G75 PDB 1 1G75 1 12 1G75 1 12 1G75 A 1 1 12 13 24 1G75 13 24 1G75 B 1 1 12 BINDING SITE FOR RESIDUE K A 26 A K 26 Software 7 BINDING SITE FOR RESIDUE MG A 25 A MG 25 Software 6 A DT 7 A DT 7 7 1_555 A UFR 8 A UFR 8 7 1_555 A HOH 54 E HOH 7 1_555 A HOH 140 E HOH 7 1_555 B DT 19 B DT 7 7 1_555 B UFR 20 B UFR 8 7 1_555 B HOH 72 F HOH 7 1_555 A HOH 171 E HOH 6 1_555 A HOH 172 E HOH 6 1_555 A HOH 173 E HOH 6 1_555 A HOH 174 E HOH 6 1_555 A HOH 175 E HOH 6 1_555 A HOH 176 E HOH 6 1_555 19 P 21 21 21