0.015763 0.009101 0.000000 0.000000 0.018201 0.000000 0.000000 0.000000 0.008023 0.00000 0.00000 0.00000 Safo, M.K. Musayev, F.N. di Salvo, M.L. Schirch, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 63.440 63.440 124.640 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C8 H10 N O6 P 247.142 PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate non-polymer O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 N C N 90 N O N 91 N N N 92 N C N 93 N O N 94 N C N 95 N N Y 96 N C Y 97 N C Y 98 N C N 99 N C Y 100 N C N 101 N C Y 102 N C Y 103 N C N 104 N N N 105 N C N 106 N C N 107 S C N 108 N O N 109 S C N 110 N O N 111 R C N 112 N O N 113 N C N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N O N 307 N C N 308 N C N 309 N SE N 310 N C N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H Y 345 N N Y 346 N C N 347 N C Y 348 N C N 349 N O Y 350 N C N 351 N C N 352 N O Y 353 N C Y 354 N C N 355 N C N 356 N O N 357 N P N 358 N O N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N P N 372 N O N 373 N O N 374 N O N 375 N O N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N O N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 R C N 412 N O N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N N Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N N N 476 S C N 477 N C N 478 N O N 479 N C N 480 N C N 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N doub N 92 N sing N 93 N sing Y 94 N doub Y 95 N sing Y 96 N sing N 97 N sing N 98 N sing Y 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing Y 104 N sing N 105 N sing N 106 N sing N 107 N sing Y 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub N 342 N sing N 343 N sing Y 344 N sing N 345 N doub N 346 N sing Y 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing N 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 310 817 826 10.1006/jmbi.2001.4734 11453690 X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution. 2001 10.2210/pdb1g77/pdb pdb_00001g77 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 98 1 mirrors IMAGE PLATE 2000-03-23 RIGAKU RAXIS II MSC mirrors LAUE L neutron 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 25819.666 PYRIDOXINE 5`-PHOSPHATE OXIDASE 1.4.3.5 1 man polymer 94.971 PHOSPHATE ION 2 syn non-polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer 247.142 PYRIDOXAL-5'-PHOSPHATE 1 syn non-polymer 18.015 water 98 nat water no yes (MSE)SDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTA(MSE)VVATVDEHGQPYQRIVLLK HYDEKG(MSE)VFYTNLGSRKAHQIENNPRVSLLFPWHTLERQV(MSE)VIGKAERLSTLEV(MSE)KYFHSRPRDSQIG AWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PLASMID PET22B 1 2.80 56.12 VAPOR DIFFUSION, HANGING DROP 7.0 Ammonium formate and MES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Derived calculations Version format compliance Refinement description Data collection Database references Derived calculations Refinement description Data collection 1 0 2000-11-29 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-08-09 1 5 2023-11-15 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 1G76 contains the same protein complexed with the same ligand. However, the number of bound ligands differ. RCSB Y RCSB 2000-11-09 REL REL PO4 PHOSPHATE ION FMN FLAVIN MONONUCLEOTIDE PLP PYRIDOXAL-5'-PHOSPHATE HOH water 1DNL PDB entry 1DNL PDB experimental model PO4 280 2 PO4 PO4 280 A PO4 290 2 PO4 PO4 290 A FMN 250 3 FMN FMN 250 A PLP 260 4 PLP PLP 260 A HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 303 5 HOH HOH 303 A HOH 304 5 HOH HOH 304 A HOH 305 5 HOH HOH 305 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 309 5 HOH HOH 309 A HOH 310 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 316 5 HOH HOH 316 A HOH 317 5 HOH HOH 317 A HOH 318 5 HOH HOH 318 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 328 5 HOH HOH 328 A HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 360 5 HOH HOH 360 A HOH 361 5 HOH HOH 361 A HOH 362 5 HOH HOH 362 A HOH 363 5 HOH HOH 363 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 367 5 HOH HOH 367 A HOH 368 5 HOH HOH 368 A HOH 369 5 HOH HOH 369 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 373 5 HOH HOH 373 A HOH 374 5 HOH HOH 374 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 378 5 HOH HOH 378 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 384 5 HOH HOH 384 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 390 5 HOH HOH 390 A HOH 391 5 HOH HOH 391 A HOH 392 5 HOH HOH 392 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 395 5 HOH HOH 395 A HOH 396 5 HOH HOH 396 A HOH 397 5 HOH HOH 397 A HOH 398 5 HOH HOH 398 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A GLY 20 n 20 GLY 20 A GLY 21 n 21 GLY 21 A LEU 22 n 22 LEU 22 A ARG 23 n 23 ARG 23 A ARG 24 n 24 ARG 24 A ARG 25 n 25 ARG 25 A ASP 26 n 26 ASP 26 A LEU 27 n 27 LEU 27 A PRO 28 n 28 PRO 28 A ALA 29 n 29 ALA 29 A ASP 30 n 30 ASP 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A THR 33 n 33 THR 33 A LEU 34 n 34 LEU 34 A PHE 35 n 35 PHE 35 A GLU 36 n 36 GLU 36 A ARG 37 n 37 ARG 37 A TRP 38 n 38 TRP 38 A LEU 39 n 39 LEU 39 A SER 40 n 40 SER 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A CYS 43 n 43 CYS 43 A GLU 44 n 44 GLU 44 A ALA 45 n 45 ALA 45 A LYS 46 n 46 LYS 46 A LEU 47 n 47 LEU 47 A ALA 48 n 48 ALA 48 A ASP 49 n 49 ASP 49 A PRO 50 n 50 PRO 50 A THR 51 n 51 THR 51 A ALA 52 n 52 ALA 52 A MSE 53 n 53 MSE 53 A VAL 54 n 54 VAL 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A THR 57 n 57 THR 57 A VAL 58 n 58 VAL 58 A ASP 59 n 59 ASP 59 A GLU 60 n 60 GLU 60 A HIS 61 n 61 HIS 61 A GLY 62 n 62 GLY 62 A GLN 63 n 63 GLN 63 A PRO 64 n 64 PRO 64 A TYR 65 n 65 TYR 65 A GLN 66 n 66 GLN 66 A ARG 67 n 67 ARG 67 A ILE 68 n 68 ILE 68 A VAL 69 n 69 VAL 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A HIS 73 n 73 HIS 73 A TYR 74 n 74 TYR 74 A ASP 75 n 75 ASP 75 A GLU 76 n 76 GLU 76 A LYS 77 n 77 LYS 77 A GLY 78 n 78 GLY 78 A MSE 79 n 79 MSE 79 A VAL 80 n 80 VAL 80 A PHE 81 n 81 PHE 81 A TYR 82 n 82 TYR 82 A THR 83 n 83 THR 83 A ASN 84 n 84 ASN 84 A LEU 85 n 85 LEU 85 A GLY 86 n 86 GLY 86 A SER 87 n 87 SER 87 A ARG 88 n 88 ARG 88 A LYS 89 n 89 LYS 89 A ALA 90 n 90 ALA 90 A HIS 91 n 91 HIS 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLU 94 n 94 GLU 94 A ASN 95 n 95 ASN 95 A ASN 96 n 96 ASN 96 A PRO 97 n 97 PRO 97 A ARG 98 n 98 ARG 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A LEU 101 n 101 LEU 101 A LEU 102 n 102 LEU 102 A PHE 103 n 103 PHE 103 A PRO 104 n 104 PRO 104 A TRP 105 n 105 TRP 105 A HIS 106 n 106 HIS 106 A THR 107 n 107 THR 107 A LEU 108 n 108 LEU 108 A GLU 109 n 109 GLU 109 A ARG 110 n 110 ARG 110 A GLN 111 n 111 GLN 111 A VAL 112 n 112 VAL 112 A MSE 113 n 113 MSE 113 A VAL 114 n 114 VAL 114 A ILE 115 n 115 ILE 115 A GLY 116 n 116 GLY 116 A LYS 117 n 117 LYS 117 A ALA 118 n 118 ALA 118 A GLU 119 n 119 GLU 119 A ARG 120 n 120 ARG 120 A LEU 121 n 121 LEU 121 A SER 122 n 122 SER 122 A THR 123 n 123 THR 123 A LEU 124 n 124 LEU 124 A GLU 125 n 125 GLU 125 A VAL 126 n 126 VAL 126 A MSE 127 n 127 MSE 127 A LYS 128 n 128 LYS 128 A TYR 129 n 129 TYR 129 A PHE 130 n 130 PHE 130 A HIS 131 n 131 HIS 131 A SER 132 n 132 SER 132 A ARG 133 n 133 ARG 133 A PRO 134 n 134 PRO 134 A ARG 135 n 135 ARG 135 A ASP 136 n 136 ASP 136 A SER 137 n 137 SER 137 A GLN 138 n 138 GLN 138 A ILE 139 n 139 ILE 139 A GLY 140 n 140 GLY 140 A ALA 141 n 141 ALA 141 A TRP 142 n 142 TRP 142 A VAL 143 n 143 VAL 143 A SER 144 n 144 SER 144 A LYS 145 n 145 LYS 145 A GLN 146 n 146 GLN 146 A SER 147 n 147 SER 147 A SER 148 n 148 SER 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A SER 151 n 151 SER 151 A ALA 152 n 152 ALA 152 A ARG 153 n 153 ARG 153 A GLY 154 n 154 GLY 154 A ILE 155 n 155 ILE 155 A LEU 156 n 156 LEU 156 A GLU 157 n 157 GLU 157 A SER 158 n 158 SER 158 A LYS 159 n 159 LYS 159 A PHE 160 n 160 PHE 160 A LEU 161 n 161 LEU 161 A GLU 162 n 162 GLU 162 A LEU 163 n 163 LEU 163 A LYS 164 n 164 LYS 164 A GLN 165 n 165 GLN 165 A LYS 166 n 166 LYS 166 A PHE 167 n 167 PHE 167 A GLN 168 n 168 GLN 168 A GLN 169 n 169 GLN 169 A GLY 170 n 170 GLY 170 A GLU 171 n 171 GLU 171 A VAL 172 n 172 VAL 172 A PRO 173 n 173 PRO 173 A LEU 174 n 174 LEU 174 A PRO 175 n 175 PRO 175 A SER 176 n 176 SER 176 A PHE 177 n 177 PHE 177 A TRP 178 n 178 TRP 178 A GLY 179 n 179 GLY 179 A GLY 180 n 180 GLY 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A VAL 183 n 183 VAL 183 A SER 184 n 184 SER 184 A LEU 185 n 185 LEU 185 A GLU 186 n 186 GLU 186 A GLN 187 n 187 GLN 187 A ILE 188 n 188 ILE 188 A GLU 189 n 189 GLU 189 A PHE 190 n 190 PHE 190 A TRP 191 n 191 TRP 191 A GLN 192 n 192 GLN 192 A GLY 193 n 193 GLY 193 A GLY 194 n 194 GLY 194 A GLU 195 n 195 GLU 195 A HIS 196 n 196 HIS 196 A ARG 197 n 197 ARG 197 A LEU 198 n 198 LEU 198 A HIS 199 n 199 HIS 199 A ASP 200 n 200 ASP 200 A ARG 201 n 201 ARG 201 A PHE 202 n 202 PHE 202 A LEU 203 n 203 LEU 203 A TYR 204 n 204 TYR 204 A GLN 205 n 205 GLN 205 A ARG 206 n 206 ARG 206 A GLU 207 n 207 GLU 207 A ASN 208 n 208 ASN 208 A ASP 209 n 209 ASP 209 A ALA 210 n 210 ALA 210 A TRP 211 n 211 TRP 211 A LYS 212 n 212 LYS 212 A ILE 213 n 213 ILE 213 A ASP 214 n 214 ASP 214 A ARG 215 n 215 ARG 215 A LEU 216 n 216 LEU 216 A ALA 217 n 217 ALA 217 A PRO 218 n 218 PRO 218 A author_and_software_defined_assembly PISA,PQS 2 dimeric 9220 -44 17100 A MSE 53 SELENOMETHIONINE A MSE 53 MET A MSE 79 SELENOMETHIONINE A MSE 79 MET A MSE 113 SELENOMETHIONINE A MSE 113 MET A MSE 127 SELENOMETHIONINE A MSE 127 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_765 -x+2,-x+y+1,-z+1/3 crystal symmetry operation 95.1600000000 54.9406516161 41.5466666667 A O ASP 214 A O ASP 214 A N LEU 203 A N LEU 203 A O GLU 119 A O GLU 119 A N ARG 182 A N ARG 182 A N TRP 191 A N TRP 191 A O GLN 111 A O GLN 111 A O GLY 116 A O GLY 116 A N VAL 99 A N VAL 99 A O LEU 102 A O LEU 102 A N VAL 54 A N VAL 54 A O THR 57 A O THR 57 A N TYR 65 A N TYR 65 A N VAL 183 A N VAL 183 A O MSE 79 A O MSE 79 1 A MSE 1 A MSE 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A ASP 5 A ASP 5 1 Y 1 A GLU 6 A GLU 6 1 Y 1 A LEU 7 A LEU 7 1 Y 1 A GLN 8 A GLN 8 1 Y 1 A GLN 9 A GLN 9 1 Y 1 A ILE 10 A ILE 10 1 Y 1 A ALA 11 A ALA 11 1 Y 1 A HIS 12 A HIS 12 1 Y 1 A LEU 13 A LEU 13 1 Y 1 A ARG 14 A ARG 14 1 Y 1 A ARG 15 A ARG 15 1 Y 1 A GLU 16 A GLU 16 1 Y 1 A TYR 17 A TYR 17 1 Y 1 A THR 18 A THR 18 1 Y 1 A LYS 19 A LYS 19 1 Y 1 A ARG 133 0.174 SIDE CHAIN 1 A A NE2 NE2 GLN GLN 66 66 2.08 1_555 6_765 1 A ASP 49 43.03 70.93 1 A TRP 105 -96.76 32.36 1 A GLN 146 -30.81 125.85 1 A SER 147 81.39 -17.63 1 A GLN 168 76.82 -7.90 1 A GLU 171 -172.60 -8.37 1 A VAL 172 45.55 98.12 1 A ASN 208 74.81 73.65 1 A ASP 209 80.90 -43.16 PROTEIN_REP.PAram PROTEIN.TOP phosphate.param WATER.TOP fmn.param FMN.TOP plp.param PHOSPHATE.TOP &_1_PARAMETER_INFILE_6 PLP.TOP 29.9 3.91 4.67 0.00 3.91 0.00 -7.83 bulk solvent correction 0.2360000 0.008 0.2090000 0.2149300 0.2100800 2.10 55.0 872 17276 16766 5.2 95.3 RANDOM 53854.88 0.00 1 RESTRAINED THROUGHOUT 1.0 FOURIER SYNTHESIS PDB entry 1DNL Engh and Huber FLAT MODEL 48.46 0.383 0.26 0.24 5.00 0.22 0.25 2.10 55.0 98 1797 57 0 1642 0.012 1.5 23.2 0.89 1.55 1.50 2.32 2.00 2.34 2.00 3.36 2.50 0.2540000 0.021 0.2650000 2.23 143 2455 2598 6 5.5 90.8 17.9 2.1 55.0 1G77 17276 17276 0 0 0.0490000 5.6000000 1 10.8 3.7 97.1 0.1560000 2.1 2.33 3.0 4480 1 3.2 96.5 refinement CNS data reduction bioteX data scaling bioteX phasing CNS X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5`-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N The biological assembly is a dimer, which was constructued from chain A and its symmetry partner generated by the two-fold axis A ARG 23 A ARG 23 HELX_P A LEU 27 A LEU 27 5 1 5 A ASP 30 A ASP 30 HELX_P A ALA 45 A ALA 45 1 2 16 A SER 87 A SER 87 HELX_P A ASN 96 A ASN 96 1 3 10 A HIS 106 A HIS 106 HELX_P A LEU 108 A LEU 108 5 4 3 A SER 122 A SER 122 HELX_P A HIS 131 A HIS 131 1 5 10 A PRO 134 A PRO 134 HELX_P A SER 144 A SER 144 1 6 11 A ALA 152 A ALA 152 HELX_P A GLN 165 A GLN 165 1 7 14 A GLY 194 A GLY 194 HELX_P A LEU 198 A LEU 198 5 8 5 covale 1.329 both A ALA 52 A C ALA 52 1_555 A MSE 53 A N MSE 53 1_555 covale 1.327 both A MSE 53 A C MSE 53 1_555 A VAL 54 A N VAL 54 1_555 covale 1.336 both A GLY 78 A C GLY 78 1_555 A MSE 79 A N MSE 79 1_555 covale 1.330 both A MSE 79 A C MSE 79 1_555 A VAL 80 A N VAL 80 1_555 covale 1.335 both A VAL 112 A C VAL 112 1_555 A MSE 113 A N MSE 113 1_555 covale 1.327 both A MSE 113 A C MSE 113 1_555 A VAL 114 A N VAL 114 1_555 covale 1.332 both A VAL 126 A C VAL 126 1_555 A MSE 127 A N MSE 127 1_555 covale 1.328 both A MSE 127 A C MSE 127 1_555 A LYS 128 A N LYS 128 1_555 OXIDOREDUCTASE PLP complex, FMN complex, pyridoxine 5'-phosphate, OXIDOREDUCTASE PDXH_ECOLI UNP 1 0 P28225 MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP 1 218 1G77 1 218 P28225 A 1 1 218 1 MET modified residue MSE 1 1G77 A P28225 UNP 0 1 1 MET modified residue MSE 53 1G77 A P28225 UNP 52 53 1 MET modified residue MSE 79 1G77 A P28225 UNP 78 79 1 MET modified residue MSE 113 1G77 A P28225 UNP 112 113 1 MET modified residue MSE 127 1G77 A P28225 UNP 126 127 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TRP 211 A TRP 211 A ARG 215 A ARG 215 A ASP 200 A ASP 200 A ARG 206 A ARG 206 A TRP 178 A TRP 178 A GLN 192 A GLN 192 A ARG 110 A ARG 110 A ARG 120 A ARG 120 A ARG 98 A ARG 98 A PHE 103 A PHE 103 A ALA 52 A ALA 52 A VAL 58 A VAL 58 A PRO 64 A PRO 64 A ASP 75 A ASP 75 A GLY 78 A GLY 78 A ASN 84 A ASN 84 BINDING SITE FOR RESIDUE PO4 A 280 A PO4 280 Software 9 BINDING SITE FOR RESIDUE PO4 A 290 A PO4 290 Software 2 BINDING SITE FOR RESIDUE FMN A 250 A FMN 250 Software 18 BINDING SITE FOR RESIDUE PLP A 260 A PLP 260 Software 9 A ARG 23 A ARG 23 9 1_555 A ARG 24 A ARG 24 9 1_555 A ARG 120 A ARG 120 9 2_755 A ALA 152 A ALA 152 9 6_765 A ARG 153 A ARG 153 9 6_765 A ARG 215 A ARG 215 9 1_555 A HOH 310 F HOH 9 1_555 A HOH 329 F HOH 9 6_765 A HOH 336 F HOH 9 1_555 A SER 148 A SER 148 2 1_555 A ARG 149 A ARG 149 2 1_555 A ARG 67 A ARG 67 18 1_555 A ILE 68 A ILE 68 18 1_555 A VAL 69 A VAL 69 18 1_555 A LEU 70 A LEU 70 18 1_555 A TYR 82 A TYR 82 18 1_555 A THR 83 A THR 83 18 1_555 A SER 87 A SER 87 18 1_555 A ARG 88 A ARG 88 18 1_555 A LYS 89 A LYS 89 18 1_555 A GLN 111 A GLN 111 18 6_765 A GLN 146 A GLN 146 18 1_555 A SER 147 A SER 147 18 1_555 A TRP 191 A TRP 191 18 6_765 A ARG 201 A ARG 201 18 6_765 A PLP 260 E PLP 18 1_555 A HOH 308 F HOH 18 1_555 A HOH 312 F HOH 18 1_555 A HOH 322 F HOH 18 6_765 A LYS 72 A LYS 72 9 1_555 A TYR 129 A TYR 129 9 1_555 A ARG 133 A ARG 133 9 1_555 A GLN 146 A GLN 146 9 1_555 A ARG 197 A ARG 197 9 6_765 A HIS 199 A HIS 199 9 6_765 A PRO 218 A PRO 218 9 6_765 A FMN 250 D FMN 9 1_555 A HOH 338 F HOH 9 1_555 152 P 31 2 1