0.015773 0.009106 0.000000 0.000000 0.018213 0.000000 0.000000 0.000000 0.008036 0.00000 0.00000 0.00000 Safo, M.K. Musayev, F.N. di Salvo, M.L. Schirch, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 63.400 63.400 124.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C8 H10 N O6 P 247.142 PYRIDOXAL-5'-PHOSPHATE VITAMIN B6 Phosphate non-polymer O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 N C N 90 N O N 91 N N N 92 N C N 93 N O N 94 N C N 95 N N Y 96 N C Y 97 N C Y 98 N C N 99 N C Y 100 N C N 101 N C Y 102 N C Y 103 N C N 104 N N N 105 N C N 106 N C N 107 S C N 108 N O N 109 S C N 110 N O N 111 R C N 112 N O N 113 N C N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N O N 307 N C N 308 N C N 309 N SE N 310 N C N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H Y 345 N N Y 346 N C N 347 N C Y 348 N C N 349 N O Y 350 N C N 351 N C N 352 N O Y 353 N C Y 354 N C N 355 N C N 356 N O N 357 N P N 358 N O N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N P N 372 N O N 373 N O N 374 N O N 375 N O N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N O N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 R C N 412 N O N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N N Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N N N 476 S C N 477 N C N 478 N O N 479 N C N 480 N C N 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N doub N 92 N sing N 93 N sing Y 94 N doub Y 95 N sing Y 96 N sing N 97 N sing N 98 N sing Y 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing Y 104 N sing N 105 N sing N 106 N sing N 107 N sing Y 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub N 342 N sing N 343 N sing Y 344 N sing N 345 N doub N 346 N sing Y 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing N 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 310 817 826 10.1006/jmbi.2001.4734 11453690 X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution. 2001 10.2210/pdb1g78/pdb pdb_00001g78 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 98 1 mirrors IMAGE PLATE 2000-03-13 RIGAKU RAXIS II MSC mirrors LAUE L neutron 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 25819.666 PYRIDOXINE 5'-PHOSPHATE OXIDASE 1.4.3.5 1 man polymer 94.971 PHOSPHATE ION 2 syn non-polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer 247.142 PYRIDOXAL-5'-PHOSPHATE 2 syn non-polymer 18.015 water 87 nat water no yes (MSE)SDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTA(MSE)VVATVDEHGQPYQRIVLLK HYDEKG(MSE)VFYTNLGSRKAHQIENNPRVSLLFPWHTLERQV(MSE)VIGKAERLSTLEV(MSE)KYFHSRPRDSQIG AWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PLASMID PET22B 1 2.80 55.99 VAPOR DIFFUSION, HANGING DROP 7.0 Ammonium formate and MES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Derived calculations Version format compliance Refinement description Data collection Database references Derived calculations Refinement description Data collection 1 0 2000-11-29 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-08-09 1 5 2023-11-15 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 1G76 contains the same protein complexed with the same ligand. However, the number of bound ligands differ. 1G77 contains the same protein complexed with the same ligand. However, the number of bound ligands differ. RCSB Y RCSB 2000-11-09 REL REL PO4 PHOSPHATE ION FMN FLAVIN MONONUCLEOTIDE PLP PYRIDOXAL-5'-PHOSPHATE HOH water 1DNL PDB entry 1DNL PDB experimental model PO4 280 2 PO4 PO4 280 A PO4 290 2 PO4 PO4 290 A FMN 250 3 FMN FMN 250 A PLP 260 4 PLP PLP 260 A PLP 270 4 PLP PLP 270 A HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 303 5 HOH HOH 303 A HOH 304 5 HOH HOH 304 A HOH 305 5 HOH HOH 305 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 310 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 313 5 HOH HOH 313 A HOH 315 5 HOH HOH 315 A HOH 316 5 HOH HOH 316 A HOH 318 5 HOH HOH 318 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 327 5 HOH HOH 327 A HOH 330 5 HOH HOH 330 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 337 5 HOH HOH 337 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 353 5 HOH HOH 353 A HOH 356 5 HOH HOH 356 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 366 5 HOH HOH 366 A HOH 368 5 HOH HOH 368 A HOH 371 5 HOH HOH 371 A HOH 386 5 HOH HOH 386 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 407 5 HOH HOH 407 A HOH 413 5 HOH HOH 413 A HOH 415 5 HOH HOH 415 A HOH 426 5 HOH HOH 426 A HOH 431 5 HOH HOH 431 A HOH 443 5 HOH HOH 443 A HOH 449 5 HOH HOH 449 A HOH 454 5 HOH HOH 454 A HOH 464 5 HOH HOH 464 A HOH 468 5 HOH HOH 468 A HOH 469 5 HOH HOH 469 A HOH 471 5 HOH HOH 471 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 476 5 HOH HOH 476 A HOH 478 5 HOH HOH 478 A HOH 479 5 HOH HOH 479 A HOH 480 5 HOH HOH 480 A HOH 481 5 HOH HOH 481 A HOH 483 5 HOH HOH 483 A HOH 484 5 HOH HOH 484 A HOH 485 5 HOH HOH 485 A HOH 486 5 HOH HOH 486 A HOH 487 5 HOH HOH 487 A HOH 488 5 HOH HOH 488 A HOH 489 5 HOH HOH 489 A HOH 490 5 HOH HOH 490 A HOH 491 5 HOH HOH 491 A HOH 492 5 HOH HOH 492 A HOH 493 5 HOH HOH 493 A HOH 494 5 HOH HOH 494 A HOH 495 5 HOH HOH 495 A HOH 496 5 HOH HOH 496 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 499 5 HOH HOH 499 A HOH 500 5 HOH HOH 500 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A GLY 20 n 20 GLY 20 A GLY 21 n 21 GLY 21 A LEU 22 n 22 LEU 22 A ARG 23 n 23 ARG 23 A ARG 24 n 24 ARG 24 A ARG 25 n 25 ARG 25 A ASP 26 n 26 ASP 26 A LEU 27 n 27 LEU 27 A PRO 28 n 28 PRO 28 A ALA 29 n 29 ALA 29 A ASP 30 n 30 ASP 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A THR 33 n 33 THR 33 A LEU 34 n 34 LEU 34 A PHE 35 n 35 PHE 35 A GLU 36 n 36 GLU 36 A ARG 37 n 37 ARG 37 A TRP 38 n 38 TRP 38 A LEU 39 n 39 LEU 39 A SER 40 n 40 SER 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A CYS 43 n 43 CYS 43 A GLU 44 n 44 GLU 44 A ALA 45 n 45 ALA 45 A LYS 46 n 46 LYS 46 A LEU 47 n 47 LEU 47 A ALA 48 n 48 ALA 48 A ASP 49 n 49 ASP 49 A PRO 50 n 50 PRO 50 A THR 51 n 51 THR 51 A ALA 52 n 52 ALA 52 A MSE 53 n 53 MSE 53 A VAL 54 n 54 VAL 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A THR 57 n 57 THR 57 A VAL 58 n 58 VAL 58 A ASP 59 n 59 ASP 59 A GLU 60 n 60 GLU 60 A HIS 61 n 61 HIS 61 A GLY 62 n 62 GLY 62 A GLN 63 n 63 GLN 63 A PRO 64 n 64 PRO 64 A TYR 65 n 65 TYR 65 A GLN 66 n 66 GLN 66 A ARG 67 n 67 ARG 67 A ILE 68 n 68 ILE 68 A VAL 69 n 69 VAL 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A HIS 73 n 73 HIS 73 A TYR 74 n 74 TYR 74 A ASP 75 n 75 ASP 75 A GLU 76 n 76 GLU 76 A LYS 77 n 77 LYS 77 A GLY 78 n 78 GLY 78 A MSE 79 n 79 MSE 79 A VAL 80 n 80 VAL 80 A PHE 81 n 81 PHE 81 A TYR 82 n 82 TYR 82 A THR 83 n 83 THR 83 A ASN 84 n 84 ASN 84 A LEU 85 n 85 LEU 85 A GLY 86 n 86 GLY 86 A SER 87 n 87 SER 87 A ARG 88 n 88 ARG 88 A LYS 89 n 89 LYS 89 A ALA 90 n 90 ALA 90 A HIS 91 n 91 HIS 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLU 94 n 94 GLU 94 A ASN 95 n 95 ASN 95 A ASN 96 n 96 ASN 96 A PRO 97 n 97 PRO 97 A ARG 98 n 98 ARG 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A LEU 101 n 101 LEU 101 A LEU 102 n 102 LEU 102 A PHE 103 n 103 PHE 103 A PRO 104 n 104 PRO 104 A TRP 105 n 105 TRP 105 A HIS 106 n 106 HIS 106 A THR 107 n 107 THR 107 A LEU 108 n 108 LEU 108 A GLU 109 n 109 GLU 109 A ARG 110 n 110 ARG 110 A GLN 111 n 111 GLN 111 A VAL 112 n 112 VAL 112 A MSE 113 n 113 MSE 113 A VAL 114 n 114 VAL 114 A ILE 115 n 115 ILE 115 A GLY 116 n 116 GLY 116 A LYS 117 n 117 LYS 117 A ALA 118 n 118 ALA 118 A GLU 119 n 119 GLU 119 A ARG 120 n 120 ARG 120 A LEU 121 n 121 LEU 121 A SER 122 n 122 SER 122 A THR 123 n 123 THR 123 A LEU 124 n 124 LEU 124 A GLU 125 n 125 GLU 125 A VAL 126 n 126 VAL 126 A MSE 127 n 127 MSE 127 A LYS 128 n 128 LYS 128 A TYR 129 n 129 TYR 129 A PHE 130 n 130 PHE 130 A HIS 131 n 131 HIS 131 A SER 132 n 132 SER 132 A ARG 133 n 133 ARG 133 A PRO 134 n 134 PRO 134 A ARG 135 n 135 ARG 135 A ASP 136 n 136 ASP 136 A SER 137 n 137 SER 137 A GLN 138 n 138 GLN 138 A ILE 139 n 139 ILE 139 A GLY 140 n 140 GLY 140 A ALA 141 n 141 ALA 141 A TRP 142 n 142 TRP 142 A VAL 143 n 143 VAL 143 A SER 144 n 144 SER 144 A LYS 145 n 145 LYS 145 A GLN 146 n 146 GLN 146 A SER 147 n 147 SER 147 A SER 148 n 148 SER 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A SER 151 n 151 SER 151 A ALA 152 n 152 ALA 152 A ARG 153 n 153 ARG 153 A GLY 154 n 154 GLY 154 A ILE 155 n 155 ILE 155 A LEU 156 n 156 LEU 156 A GLU 157 n 157 GLU 157 A SER 158 n 158 SER 158 A LYS 159 n 159 LYS 159 A PHE 160 n 160 PHE 160 A LEU 161 n 161 LEU 161 A GLU 162 n 162 GLU 162 A LEU 163 n 163 LEU 163 A LYS 164 n 164 LYS 164 A GLN 165 n 165 GLN 165 A LYS 166 n 166 LYS 166 A PHE 167 n 167 PHE 167 A GLN 168 n 168 GLN 168 A GLN 169 n 169 GLN 169 A GLY 170 n 170 GLY 170 A GLU 171 n 171 GLU 171 A VAL 172 n 172 VAL 172 A PRO 173 n 173 PRO 173 A LEU 174 n 174 LEU 174 A PRO 175 n 175 PRO 175 A SER 176 n 176 SER 176 A PHE 177 n 177 PHE 177 A TRP 178 n 178 TRP 178 A GLY 179 n 179 GLY 179 A GLY 180 n 180 GLY 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A VAL 183 n 183 VAL 183 A SER 184 n 184 SER 184 A LEU 185 n 185 LEU 185 A GLU 186 n 186 GLU 186 A GLN 187 n 187 GLN 187 A ILE 188 n 188 ILE 188 A GLU 189 n 189 GLU 189 A PHE 190 n 190 PHE 190 A TRP 191 n 191 TRP 191 A GLN 192 n 192 GLN 192 A GLY 193 n 193 GLY 193 A GLY 194 n 194 GLY 194 A GLU 195 n 195 GLU 195 A HIS 196 n 196 HIS 196 A ARG 197 n 197 ARG 197 A LEU 198 n 198 LEU 198 A HIS 199 n 199 HIS 199 A ASP 200 n 200 ASP 200 A ARG 201 n 201 ARG 201 A PHE 202 n 202 PHE 202 A LEU 203 n 203 LEU 203 A TYR 204 n 204 TYR 204 A GLN 205 n 205 GLN 205 A ARG 206 n 206 ARG 206 A GLU 207 n 207 GLU 207 A ASN 208 n 208 ASN 208 A ASP 209 n 209 ASP 209 A ALA 210 n 210 ALA 210 A TRP 211 n 211 TRP 211 A LYS 212 n 212 LYS 212 A ILE 213 n 213 ILE 213 A ASP 214 n 214 ASP 214 A ARG 215 n 215 ARG 215 A LEU 216 n 216 LEU 216 A ALA 217 n 217 ALA 217 A PRO 218 n 218 PRO 218 A author_and_software_defined_assembly PISA,PQS 2 dimeric 9550 -48 17430 A MSE 53 SELENOMETHIONINE A MSE 53 MET A MSE 79 SELENOMETHIONINE A MSE 79 MET A MSE 113 SELENOMETHIONINE A MSE 113 MET A MSE 127 SELENOMETHIONINE A MSE 127 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_765 -x+2,-x+y+1,-z+1/3 crystal symmetry operation 95.1000000000 54.9060105999 41.4800000000 A O ASP 214 A O ASP 214 A N LEU 203 A N LEU 203 A O GLU 119 A O GLU 119 A N ARG 182 A N ARG 182 A N TRP 191 A N TRP 191 A O GLN 111 A O GLN 111 A O GLY 116 A O GLY 116 A N VAL 99 A N VAL 99 A O LEU 102 A O LEU 102 A N VAL 54 A N VAL 54 A O THR 57 A O THR 57 A N TYR 65 A N TYR 65 A N VAL 183 A N VAL 183 A O MSE 79 A O MSE 79 1 A MSE 1 A MSE 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A ASP 5 A ASP 5 1 Y 1 A GLU 6 A GLU 6 1 Y 1 A LEU 7 A LEU 7 1 Y 1 A GLN 8 A GLN 8 1 Y 1 A GLN 9 A GLN 9 1 Y 1 A ILE 10 A ILE 10 1 Y 1 A ALA 11 A ALA 11 1 Y 1 A HIS 12 A HIS 12 1 Y 1 A LEU 13 A LEU 13 1 Y 1 A ARG 14 A ARG 14 1 Y 1 A ARG 15 A ARG 15 1 Y 1 A GLU 16 A GLU 16 1 Y 1 A TYR 17 A TYR 17 1 Y 1 A THR 18 A THR 18 1 Y 1 A LYS 19 A LYS 19 1 Y 1 A ASP 49 32.84 69.72 1 A TRP 105 -95.99 40.00 1 A GLN 146 -28.37 125.19 1 A SER 147 81.45 -13.76 1 A GLN 168 68.27 -8.69 1 A GLN 169 80.11 31.91 1 A GLU 171 168.44 -6.49 1 A VAL 172 51.47 105.59 1 A HIS 196 54.85 16.21 1 A GLU 207 -150.63 70.57 1 A ASN 208 78.48 57.79 1 A ASP 209 71.21 -6.15 PROTEIN_REP.PAram PROTEIN.TOP phosphate.param WATER.TOP fmn.param FMN.TOP plp.param PHOSPHATE.TOP &_1_PARAMETER_INFILE_6 PLP.TOP 35.7 6.04 5.11 0.00 6.04 0.00 -12.08 bulk solvent correction 0.2650000 0.010 0.2180000 0.2205600 0.2204500 2.20 55.0 766 15203 15193 5.0 99.4 RANDOM 58984.76 0.00 1 RESTRAINED THROUGHOUT 1.0 FOURIER SYNTHESIS PDB entry 1DNL Engh and Huber FLAT MODEL 55.65 0.381 0.36 0.28 5.00 0.36 0.34 2.20 55.0 87 1802 73 0 1642 0.011 1.4 23.0 0.81 1.29 1.50 2.11 2.00 2.09 2.00 2.95 2.50 0.3210000 0.027 0.3050000 2.34 136 2326 2462 6 5.5 99.2 25.5 2.2 55.0 1G78 15203 15203 0 0 0.0590000 5.9000000 1 9.9 4.4 98.1 0.2290000 2.2 2.3 2.3 1837 1 3.7 98.6 refinement CNS data reduction bioteX data scaling bioteX phasing CNS X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N 5 N N The biological assembly is a dimer, which was constructued from chain A and its symmetry partner generated by the two-fold axis A ARG 23 A ARG 23 HELX_P A LEU 27 A LEU 27 5 1 5 A ASP 30 A ASP 30 HELX_P A ALA 45 A ALA 45 1 2 16 A SER 87 A SER 87 HELX_P A ASN 96 A ASN 96 1 3 10 A TRP 105 A TRP 105 HELX_P A LEU 108 A LEU 108 5 4 4 A SER 122 A SER 122 HELX_P A HIS 131 A HIS 131 1 5 10 A PRO 134 A PRO 134 HELX_P A SER 144 A SER 144 1 6 11 A ARG 153 A ARG 153 HELX_P A GLN 168 A GLN 168 1 7 16 A GLY 194 A GLY 194 HELX_P A LEU 198 A LEU 198 5 8 5 covale 1.323 both A ALA 52 A C ALA 52 1_555 A MSE 53 A N MSE 53 1_555 covale 1.332 both A MSE 53 A C MSE 53 1_555 A VAL 54 A N VAL 54 1_555 covale 1.333 both A GLY 78 A C GLY 78 1_555 A MSE 79 A N MSE 79 1_555 covale 1.332 both A MSE 79 A C MSE 79 1_555 A VAL 80 A N VAL 80 1_555 covale 1.332 both A VAL 112 A C VAL 112 1_555 A MSE 113 A N MSE 113 1_555 covale 1.328 both A MSE 113 A C MSE 113 1_555 A VAL 114 A N VAL 114 1_555 covale 1.330 both A VAL 126 A C VAL 126 1_555 A MSE 127 A N MSE 127 1_555 covale 1.330 both A MSE 127 A C MSE 127 1_555 A LYS 128 A N LYS 128 1_555 OXIDOREDUCTASE PLP complex, FMN complex, pyridoxine 5'-phosphate, OXIDOREDUCTASE PDXH_ECOLI UNP 1 0 P28225 MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP 1 218 1G78 1 218 P28225 A 1 1 218 1 MET modified residue MSE 1 1G78 A P28225 UNP 0 1 1 MET modified residue MSE 53 1G78 A P28225 UNP 52 53 1 MET modified residue MSE 79 1G78 A P28225 UNP 78 79 1 MET modified residue MSE 113 1G78 A P28225 UNP 112 113 1 MET modified residue MSE 127 1G78 A P28225 UNP 126 127 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TRP 211 A TRP 211 A ARG 215 A ARG 215 A ASP 200 A ASP 200 A ARG 206 A ARG 206 A TRP 178 A TRP 178 A GLN 192 A GLN 192 A ARG 110 A ARG 110 A ARG 120 A ARG 120 A ARG 98 A ARG 98 A PHE 103 A PHE 103 A ALA 52 A ALA 52 A VAL 58 A VAL 58 A PRO 64 A PRO 64 A ASP 75 A ASP 75 A GLY 78 A GLY 78 A ASN 84 A ASN 84 BINDING SITE FOR RESIDUE PO4 A 280 A PO4 280 Software 8 BINDING SITE FOR RESIDUE PO4 A 290 A PO4 290 Software 2 BINDING SITE FOR RESIDUE FMN A 250 A FMN 250 Software 18 BINDING SITE FOR RESIDUE PLP A 260 A PLP 260 Software 8 BINDING SITE FOR RESIDUE PLP A 270 A PLP 270 Software 9 A ARG 23 A ARG 23 8 1_555 A ARG 24 A ARG 24 8 1_555 A ARG 120 A ARG 120 8 2_755 A ALA 152 A ALA 152 8 6_765 A ARG 153 A ARG 153 8 6_765 A ARG 215 A ARG 215 8 1_555 A HOH 311 G HOH 8 1_555 A HOH 342 G HOH 8 6_765 A SER 148 A SER 148 2 1_555 A ARG 149 A ARG 149 2 1_555 A ARG 67 A ARG 67 18 1_555 A ILE 68 A ILE 68 18 1_555 A VAL 69 A VAL 69 18 1_555 A LEU 70 A LEU 70 18 1_555 A TYR 82 A TYR 82 18 1_555 A THR 83 A THR 83 18 1_555 A SER 87 A SER 87 18 1_555 A ARG 88 A ARG 88 18 1_555 A LYS 89 A LYS 89 18 1_555 A GLN 111 A GLN 111 18 6_765 A GLN 146 A GLN 146 18 1_555 A SER 147 A SER 147 18 1_555 A TRP 191 A TRP 191 18 6_765 A ARG 201 A ARG 201 18 6_765 A PLP 260 E PLP 18 1_555 A HOH 308 G HOH 18 1_555 A HOH 315 G HOH 18 1_555 A HOH 330 G HOH 18 6_765 A LYS 72 A LYS 72 8 1_555 A TYR 129 A TYR 129 8 1_555 A ARG 133 A ARG 133 8 1_555 A SER 137 A SER 137 8 1_555 A ARG 197 A ARG 197 8 6_765 A HIS 199 A HIS 199 8 6_765 A PRO 218 A PRO 218 8 6_765 A FMN 250 D FMN 8 1_555 A ARG 25 A ARG 25 9 3_774 A ASP 26 A ASP 26 9 3_774 A ASN 84 A ASN 84 9 1_555 A TRP 142 A TRP 142 9 1_555 A SER 144 A SER 144 9 1_555 A LYS 145 A LYS 145 9 1_555 A PHE 177 A PHE 177 9 1_555 A HOH 481 G HOH 9 1_555 A HOH 491 G HOH 9 1_555 152 P 31 2 1