0.00848
0.00000
0.00000
0.00000
0.00848
0.00000
0.00000
0.00000
0.00848
0.00000
0.00000
0.00000
Asojo, O.A.
Friedman, J.M.
Belakhov, V.
Shoham, Y.
Adir, N.
Baasov, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
117.900
117.900
117.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H5 O6 P
168.042
PHOSPHOENOLPYRUVATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
O
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
P
N
257
N
O
N
258
N
O
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
R
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
Y
262
N
doub
Y
263
N
sing
Y
264
N
sing
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
40
6326
6334
10.1021/bi010339d
11371194
Crystal structures of KDOP synthase in its binary complexes with the substrate phosphoenolpyruvate and with a mechanism-based inhibitor.
2001
10.2210/pdb1g7u/pdb
pdb_00001g7u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
180
1
IMAGE PLATE
1996-12-01
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
30912.754
2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
4.1.2.16
1
man
polymer
168.042
PHOSPHOENOLPYRUVATE
1
syn
non-polymer
18.015
water
15
nat
water
KDO 8-P SYNTHASE
no
no
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFVAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFVAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
1
2.21
44.29
VAPOR DIFFUSION, HANGING DROP
6.1
MES 61mM pH 6.1, Glycerol 25% v/v, PEG 400 10% v/v,
3mg/mL PEP, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
exptl_crystal_grow
pdbx_unobs_or_zero_occ_residues
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_residues
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Experimental preparation
Advisory
Data collection
Database references
Derived calculations
1
0
2001-05-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-02-07
1
4
2024-02-07
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structures of KDO8P Synthase in its binary Complexes with the Mechanism-Based Inhibitor
RCSB
Y
RCSB
2000-11-14
REL
PEP
PHOSPHOENOLPYRUVATE
HOH
water
PEP
300
2
PEP
PEP
300
A
H2O
1
3
HOH
HOH
301
A
H2O
2
3
HOH
HOH
302
A
H2O
3
3
HOH
HOH
303
A
H2O
4
3
HOH
HOH
304
A
H2O
5
3
HOH
HOH
305
A
H2O
6
3
HOH
HOH
306
A
H2O
7
3
HOH
HOH
307
A
H2O
8
3
HOH
HOH
308
A
H2O
9
3
HOH
HOH
309
A
H2O
10
3
HOH
HOH
310
A
H2O
11
3
HOH
HOH
311
A
H2O
12
3
HOH
HOH
312
A
H2O
13
3
HOH
HOH
313
A
H2O
14
3
HOH
HOH
314
A
H2O
15
3
HOH
HOH
315
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
GLN
3
n
3
GLN
3
A
LYS
4
n
4
LYS
4
A
VAL
5
n
5
VAL
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
ASP
10
n
10
ASP
10
A
ILE
11
n
11
ILE
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ASN
15
n
15
ASN
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
PRO
18
n
18
PRO
18
A
PHE
19
n
19
PHE
19
A
VAL
20
n
20
VAL
20
A
LEU
21
n
21
LEU
21
A
PHE
22
n
22
PHE
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
MET
25
n
25
MET
25
A
ASN
26
n
26
ASN
26
A
VAL
27
n
27
VAL
27
A
LEU
28
n
28
LEU
28
A
GLU
29
n
29
GLU
29
A
SER
30
n
30
SER
30
A
ARG
31
n
31
ARG
31
A
ASP
32
n
32
ASP
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
MET
35
n
35
MET
35
A
ARG
36
n
36
ARG
36
A
ILE
37
n
37
ILE
37
A
CYS
38
n
38
CYS
38
A
GLU
39
n
39
GLU
39
A
HIS
40
n
40
HIS
40
A
TYR
41
n
41
TYR
41
A
VAL
42
n
42
VAL
42
A
THR
43
n
43
THR
43
A
VAL
44
n
44
VAL
44
A
THR
45
n
45
THR
45
A
GLN
46
n
46
GLN
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
PRO
51
n
51
PRO
51
A
TYR
52
n
52
TYR
52
A
VAL
53
n
53
VAL
53
A
PHE
54
n
54
PHE
54
A
LYS
55
n
55
LYS
55
A
ALA
56
n
56
ALA
56
A
SER
57
n
57
SER
57
A
PHE
58
n
58
PHE
58
A
ASP
59
n
59
ASP
59
A
LYS
60
n
60
LYS
60
A
ALA
61
n
61
ALA
61
A
ASN
62
n
62
ASN
62
A
ARG
63
n
63
ARG
63
A
SER
64
n
64
SER
64
A
SER
65
n
65
SER
65
A
ILE
66
n
66
ILE
66
A
HIS
67
n
67
HIS
67
A
SER
68
n
68
SER
68
A
TYR
69
n
69
TYR
69
A
ARG
70
n
70
ARG
70
A
GLY
71
n
71
GLY
71
A
PRO
72
n
72
PRO
72
A
GLY
73
n
73
GLY
73
A
LEU
74
n
74
LEU
74
A
GLU
75
n
75
GLU
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
MET
78
n
78
MET
78
A
LYS
79
n
79
LYS
79
A
ILE
80
n
80
ILE
80
A
PHE
81
n
81
PHE
81
A
GLN
82
n
82
GLN
82
A
GLU
83
n
83
GLU
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
GLN
86
n
86
GLN
86
A
THR
87
n
87
THR
87
A
PHE
88
n
88
PHE
88
A
GLY
89
n
89
GLY
89
A
VAL
90
n
90
VAL
90
A
LYS
91
n
91
LYS
91
A
ILE
92
n
92
ILE
92
A
ILE
93
n
93
ILE
93
A
THR
94
n
94
THR
94
A
ASP
95
n
95
ASP
95
A
VAL
96
n
96
VAL
96
A
HIS
97
n
97
HIS
97
A
GLU
98
n
98
GLU
98
A
PRO
99
n
99
PRO
99
A
SER
100
n
100
SER
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
GLN
103
n
103
GLN
103
A
PRO
104
n
104
PRO
104
A
VAL
105
n
105
VAL
105
A
ALA
106
n
106
ALA
106
A
ASP
107
n
107
ASP
107
A
VAL
108
n
108
VAL
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
ILE
112
n
112
ILE
112
A
GLN
113
n
113
GLN
113
A
LEU
114
n
114
LEU
114
A
PRO
115
n
115
PRO
115
A
ALA
116
n
116
ALA
116
A
PHE
117
n
117
PHE
117
A
LEU
118
n
118
LEU
118
A
ALA
119
n
119
ALA
119
A
ARG
120
n
120
ARG
120
A
GLN
121
n
121
GLN
121
A
THR
122
n
122
THR
122
A
ASP
123
n
123
ASP
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
ALA
127
n
127
ALA
127
A
MET
128
n
128
MET
128
A
ALA
129
n
129
ALA
129
A
LYS
130
n
130
LYS
130
A
THR
131
n
131
THR
131
A
GLY
132
n
132
GLY
132
A
ALA
133
n
133
ALA
133
A
VAL
134
n
134
VAL
134
A
ILE
135
n
135
ILE
135
A
ASN
136
n
136
ASN
136
A
VAL
137
n
137
VAL
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
PRO
140
n
140
PRO
140
A
GLN
141
n
141
GLN
141
A
PHE
142
n
142
PHE
142
A
VAL
143
n
143
VAL
143
A
SER
144
n
144
SER
144
A
PRO
145
n
145
PRO
145
A
GLY
146
n
146
GLY
146
A
GLN
147
n
147
GLN
147
A
MET
148
n
148
MET
148
A
GLY
149
n
149
GLY
149
A
ASN
150
n
150
ASN
150
A
ILE
151
n
151
ILE
151
A
VAL
152
n
152
VAL
152
A
ASP
153
n
153
ASP
153
A
LYS
154
n
154
LYS
154
A
PHE
155
n
155
PHE
155
A
LYS
156
n
156
LYS
156
A
GLU
157
n
157
GLU
157
A
GLY
158
n
158
GLY
158
A
GLY
159
n
159
GLY
159
A
ASN
160
n
160
ASN
160
A
GLU
161
n
161
GLU
161
A
LYS
162
n
162
LYS
162
A
VAL
163
n
163
VAL
163
A
ILE
164
n
164
ILE
164
A
LEU
165
n
165
LEU
165
A
CYS
166
n
166
CYS
166
A
ASP
167
n
167
ASP
167
A
ARG
168
n
168
ARG
168
A
GLY
169
n
169
GLY
169
A
ALA
170
n
170
ALA
170
A
ASN
171
n
171
ASN
171
A
PHE
172
n
172
PHE
172
A
GLY
173
n
173
GLY
173
A
TYR
174
n
174
TYR
174
A
ASP
175
n
175
ASP
175
A
ASN
176
n
176
ASN
176
A
LEU
177
n
177
LEU
177
A
VAL
178
n
178
VAL
178
A
VAL
179
n
179
VAL
179
A
ASP
180
n
180
ASP
180
A
MET
181
n
181
MET
181
A
LEU
182
n
182
LEU
182
A
GLY
183
n
183
GLY
183
A
PHE
184
n
184
PHE
184
A
SER
185
n
185
SER
185
A
ILE
186
n
186
ILE
186
A
MET
187
n
187
MET
187
A
LYS
188
n
188
LYS
188
A
LYS
189
n
189
LYS
189
A
VAL
190
n
190
VAL
190
A
SER
191
n
191
SER
191
A
GLY
192
n
192
GLY
192
A
ASN
193
n
193
ASN
193
A
SER
194
n
194
SER
194
A
PRO
195
n
195
PRO
195
A
VAL
196
n
196
VAL
196
A
ILE
197
n
197
ILE
197
A
PHE
198
n
198
PHE
198
A
ASP
199
n
199
ASP
199
A
VAL
200
n
200
VAL
200
A
THR
201
n
201
THR
201
A
HIS
202
n
202
HIS
202
A
ALA
203
n
203
ALA
203
A
LEU
204
n
204
LEU
204
A
GLN
205
n
205
GLN
205
A
CYS
206
n
206
CYS
206
A
ARG
207
n
207
ARG
207
A
ASP
208
n
208
ASP
208
A
PRO
209
n
209
PRO
209
A
PHE
210
n
210
PHE
210
A
VAL
211
n
211
VAL
211
A
ALA
212
n
212
ALA
212
A
ALA
213
n
213
ALA
213
A
SER
214
n
214
SER
214
A
GLY
215
n
215
GLY
215
A
GLY
216
n
216
GLY
216
A
ARG
217
n
217
ARG
217
A
ARG
218
n
218
ARG
218
A
ALA
219
n
219
ALA
219
A
GLN
220
n
220
GLN
220
A
VAL
221
n
221
VAL
221
A
ALA
222
n
222
ALA
222
A
GLU
223
n
223
GLU
223
A
LEU
224
n
224
LEU
224
A
ALA
225
n
225
ALA
225
A
ARG
226
n
226
ARG
226
A
ALA
227
n
227
ALA
227
A
GLY
228
n
228
GLY
228
A
MET
229
n
229
MET
229
A
ALA
230
n
230
ALA
230
A
VAL
231
n
231
VAL
231
A
GLY
232
n
232
GLY
232
A
LEU
233
n
233
LEU
233
A
ALA
234
n
234
ALA
234
A
GLY
235
n
235
GLY
235
A
LEU
236
n
236
LEU
236
A
PHE
237
n
237
PHE
237
A
ILE
238
n
238
ILE
238
A
GLU
239
n
239
GLU
239
A
ALA
240
n
240
ALA
240
A
HIS
241
n
241
HIS
241
A
PRO
242
n
242
PRO
242
A
ASP
243
n
243
ASP
243
A
PRO
244
n
244
PRO
244
A
GLU
245
n
245
GLU
245
A
HIS
246
n
246
HIS
246
A
ALA
247
n
247
ALA
247
A
LYS
248
n
248
LYS
248
A
CYS
249
n
249
CYS
249
A
ASP
250
n
250
ASP
250
A
GLY
251
n
251
GLY
251
A
PRO
252
n
252
PRO
252
A
SER
253
n
253
SER
253
A
ALA
254
n
254
ALA
254
A
LEU
255
n
255
LEU
255
A
PRO
256
n
256
PRO
256
A
LEU
257
n
257
LEU
257
A
ALA
258
n
258
ALA
258
A
LYS
259
n
259
LYS
259
A
LEU
260
n
260
LEU
260
A
GLU
261
n
261
GLU
261
A
PRO
262
n
262
PRO
262
A
PHE
263
n
263
PHE
263
A
LEU
264
n
264
LEU
264
A
LYS
265
n
265
LYS
265
A
GLN
266
n
266
GLN
266
A
MET
267
n
267
MET
267
A
LYS
268
n
268
LYS
268
A
ALA
269
n
269
ALA
269
A
ILE
270
n
270
ILE
270
A
ASP
271
n
271
ASP
271
A
ASP
272
n
272
ASP
272
A
LEU
273
n
273
LEU
273
A
VAL
274
n
274
VAL
274
A
LYS
275
n
275
LYS
275
A
GLY
276
n
276
GLY
276
A
PHE
277
n
277
PHE
277
A
GLU
278
n
278
GLU
278
A
GLU
279
n
279
GLU
279
A
LEU
280
n
280
LEU
280
A
ASP
281
n
281
ASP
281
A
THR
282
n
282
THR
282
A
SER
283
n
283
SER
283
A
LYS
284
n
284
LYS
284
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
4
tetrameric
16750
-106
38040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_575
-x,-y+2,z
crystal symmetry operation
0.0000000000
235.8000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_556
-x,y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
117.9000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_576
x,-y+2,-z+1
crystal symmetry operation
0.0000000000
235.8000000000
117.9000000000
A
O
ILE
8
A
O
ILE
8
A
N
ILE
11
A
N
ILE
11
A
N
VAL
53
A
N
VAL
53
A
O
LEU
21
A
O
LEU
21
A
N
PHE
22
A
N
PHE
22
A
O
LEU
236
A
O
LEU
236
A
N
GLY
235
A
N
GLY
235
A
O
VAL
196
A
O
VAL
196
A
N
ILE
197
A
N
ILE
197
A
O
LEU
165
A
O
LEU
165
A
N
ILE
164
A
N
ILE
164
A
O
ILE
135
A
O
ILE
135
A
N
ASN
136
A
N
ASN
136
A
O
ILE
112
A
O
ILE
112
A
O
ALA
170
A
O
ALA
170
A
N
VAL
178
A
N
VAL
178
A
N
HIS
241
A
N
HIS
241
A
O
LEU
255
A
O
LEU
255
1
A
ARG
207
A
ARG
207
0
Y
1
A
ASP
208
A
ASP
208
0
Y
1
A
PRO
209
A
PRO
209
0
Y
1
A
PHE
210
A
PHE
210
0
Y
1
A
VAL
211
A
VAL
211
0
Y
1
A
ALA
212
A
ALA
212
0
Y
1
A
ALA
213
A
ALA
213
0
Y
1
A
SER
214
A
SER
214
0
Y
1
A
GLY
215
A
GLY
215
0
Y
1
A
GLY
216
A
GLY
216
0
Y
1
14.79
1.50
119.30
134.09
A
A
A
C
N
CA
LEU
PRO
PRO
17
18
18
Y
1
-16.40
2.10
128.40
112.00
A
A
A
C
N
CD
LEU
PRO
PRO
17
18
18
Y
1
17.07
2.70
111.00
128.07
A
A
A
N
CA
C
SER
SER
SER
65
65
65
N
1
13.76
1.50
119.30
133.06
A
A
A
C
N
CA
GLY
PRO
PRO
71
72
72
Y
1
11.77
1.50
119.30
131.07
A
A
A
C
N
CA
GLU
PRO
PRO
98
99
99
Y
1
-19.94
2.70
111.00
91.06
A
A
A
N
CA
C
PHE
PHE
PHE
210
210
210
N
1
-22.78
2.70
111.00
88.22
A
A
A
N
CA
C
ALA
ALA
ALA
212
212
212
N
1
12.07
1.50
119.30
131.37
A
A
A
C
N
CA
ASP
PRO
PRO
243
244
244
Y
1
-18.42
2.10
128.40
109.98
A
A
A
C
N
CD
ASP
PRO
PRO
243
244
244
Y
1
11.58
1.10
114.20
125.78
A
A
A
CA
CB
SG
CYS
CYS
CYS
249
249
249
N
1
A
ALA
14
172.31
152.18
1
A
PRO
18
-9.96
154.97
1
A
ASN
26
-89.32
-148.71
1
A
VAL
27
-20.21
127.36
1
A
LEU
28
-66.88
92.97
1
A
GLU
29
-83.12
-81.97
1
A
ARG
31
-36.75
-27.43
1
A
ALA
34
-32.71
-70.09
1
A
THR
43
-53.02
-71.50
1
A
LYS
60
-119.59
-94.97
1
A
ALA
61
68.82
-44.07
1
A
ARG
63
83.28
-148.86
1
A
SER
64
-34.88
139.71
1
A
SER
65
-141.40
-144.27
1
A
HIS
67
115.31
-39.15
1
A
SER
68
-2.78
76.86
1
A
PRO
72
-29.20
-24.39
1
A
LEU
74
-21.33
-62.78
1
A
GLU
75
-44.93
-82.39
1
A
ILE
80
-39.53
-35.23
1
A
GLU
83
-77.48
-83.14
1
A
LEU
84
-45.25
-19.68
1
A
LYS
85
-44.40
-89.98
1
A
PHE
88
-151.68
38.27
1
A
VAL
96
-78.83
-166.29
1
A
HIS
97
-148.46
-43.54
1
A
PRO
99
8.78
-88.96
1
A
SER
100
-13.77
-76.63
1
A
GLN
101
-52.12
4.77
1
A
ASP
107
-157.55
-38.24
1
A
ALA
116
-39.92
-37.30
1
A
ARG
120
-91.81
53.35
1
A
THR
122
53.82
-79.30
1
A
ASP
123
-47.10
-11.27
1
A
THR
131
-145.57
-100.82
1
A
ALA
133
-127.54
-160.94
1
A
VAL
137
-49.70
90.00
1
A
ASP
153
-43.56
-70.50
1
A
LYS
162
-60.27
77.08
1
A
ASP
175
22.03
75.62
1
A
PHE
184
-53.14
-75.80
1
A
ASN
193
43.16
23.90
1
A
ALA
203
-93.08
-78.73
1
A
GLN
205
-25.46
-61.64
1
A
PHE
210
-155.54
72.22
1
A
ALA
212
109.12
-73.40
1
A
SER
214
179.58
-91.43
1
A
ARG
217
51.15
-131.47
1
A
ARG
218
84.73
132.12
1
A
GLN
220
-151.11
62.77
1
A
ASP
243
-108.40
68.19
1
A
PRO
244
44.92
-16.84
1
A
GLU
245
110.85
137.60
1
A
ASP
250
-146.71
-54.48
1
A
PRO
252
-59.77
-153.34
1
A
ALA
254
-177.48
135.14
1
A
LEU
257
-27.46
-50.78
1
A
PHE
277
-15.56
113.53
1
A
GLU
279
-27.68
121.26
1
A
ASP
281
-174.89
149.72
0.2810000
0.2280000
0.2310000
2.8
8
317
7985
6811
random
1
3
MOLECULAR REPLACEMENT
Engh & Huber
2.8
8
15
2192
10
0
2167
2.5
0.016
26.1
2.3
51.113
2.6
30
1G7U
18541
7645
0
1
0.0660000
1
6.9
2.3
90.1
0.0660000
2.6
2.7
692
1
3.4
85.3
phasing
AMoRE
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH SUBSTRATE PHOSPHOENOL PYRUVATE
1
N
N
2
N
N
3
N
N
A
ASP
32
A
ASP
32
HELX_P
A
GLY
49
A
GLY
49
1
1
18
A
GLY
73
A
GLY
73
HELX_P
A
PHE
88
A
PHE
88
1
2
16
A
GLU
98
A
GLU
98
HELX_P
A
GLN
103
A
GLN
103
5
3
6
A
PRO
104
A
PRO
104
HELX_P
A
VAL
109
A
VAL
109
1
4
6
A
PRO
115
A
PRO
115
HELX_P
A
GLN
121
A
GLN
121
5
5
7
A
THR
122
A
THR
122
HELX_P
A
LYS
130
A
LYS
130
1
6
9
A
SER
144
A
SER
144
HELX_P
A
GLN
147
A
GLN
147
5
7
4
A
MET
148
A
MET
148
HELX_P
A
GLY
158
A
GLY
158
1
8
11
A
LEU
182
A
LEU
182
HELX_P
A
SER
191
A
SER
191
1
9
10
A
VAL
200
A
VAL
200
HELX_P
A
ASP
208
A
ASP
208
1
10
9
A
GLN
220
A
GLN
220
HELX_P
A
ALA
230
A
ALA
230
1
11
11
A
LEU
260
A
LEU
260
HELX_P
A
PHE
277
A
PHE
277
1
12
18
LYASE
beta-alpha-barrels, lyase, lipopolysaccharide
KDSA_ECOLI
UNP
1
1
P0A715
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
1
284
1G7U
1
284
P0A715
A
1
1
284
1
GLY
conflict
VAL
211
1G7U
A
P0A715
UNP
211
211
2
7
2
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
SER
7
A
SER
7
A
ILE
8
A
ILE
8
A
ILE
11
A
ILE
11
A
ASN
12
A
ASN
12
A
TYR
52
A
TYR
52
A
LYS
55
A
LYS
55
A
VAL
20
A
VAL
20
A
GLY
24
A
GLY
24
A
GLY
235
A
GLY
235
A
PHE
237
A
PHE
237
A
VAL
196
A
VAL
196
A
ASP
199
A
ASP
199
A
VAL
163
A
VAL
163
A
ASP
167
A
ASP
167
A
VAL
134
A
VAL
134
A
LYS
138
A
LYS
138
A
VAL
111
A
VAL
111
A
LEU
114
A
LEU
114
A
ALA
170
A
ALA
170
A
ASN
171
A
ASN
171
A
LEU
177
A
LEU
177
A
VAL
178
A
VAL
178
A
ALA
240
A
ALA
240
A
HIS
241
A
HIS
241
A
LEU
255
A
LEU
255
A
PRO
256
A
PRO
256
BINDING SITE FOR RESIDUE PEP A 300
A
PEP
300
Software
4
A
PHE
117
A
PHE
117
4
1_555
A
ARG
168
A
ARG
168
4
1_555
A
HIS
202
A
HIS
202
4
1_555
A
PRO
252
A
PRO
252
4
1_555
197
I 2 3