0.00850 0.00000 0.00000 0.00000 0.00850 0.00000 0.00000 0.00000 0.00850 0.00000 0.00000 0.00000 Asojo, O.A. Friedman, J.M. Belakhov, V. Shoham, Y. Adir, N. Baasov, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 117.600 117.600 117.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H23 N O13 P2 415.225 {[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY-6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC ACID non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N P N 251 N O N 252 N O N 253 N O N 254 N O N 255 N C N 256 R C N 257 N O N 258 R C N 259 N O N 260 R C N 261 N O N 262 R C N 263 N O N 264 N C N 265 N N N 266 N C N 267 N C N 268 N O N 269 N O N 270 N C N 271 N P N 272 N O N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N O N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 R C N 357 N O N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing Y 295 N doub Y 296 N sing Y 297 N sing N 298 N sing Y 299 N doub N 300 N sing Y 301 N doub N 302 N sing Y 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing Y 364 N doub Y 365 N sing Y 366 N sing N 367 N sing Y 368 N doub N 369 N sing Y 370 N doub N 371 N sing Y 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing US Biochemistry BICHAW 0033 0006-2960 40 6326 6334 10.1021/bi010339d 11371194 Crystal structures of KDOP synthase in its binary complexes with the substrate phosphoenolpyruvate and with a mechanism-based inhibitor. 2001 10.2210/pdb1g7v/pdb pdb_00001g7v 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 IMAGE PLATE 1997 RIGAKU RAXIS IV MAD M x-ray 1 0.98104 1.0 0.98066 1.0 0.97719 1.0 X4A NSLS 0.98104, 0.98066, 0.97719 SYNCHROTRON NSLS BEAMLINE X4A 30870.676 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 4.1.2.16 1 man polymer 415.225 {[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY-6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC ACID 1 syn non-polymer 18.015 water 21 nat water KDO 8-P SYNTHASE no no MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli 1 2.19 43.94 VAPOR DIFFUSION, HANGING DROP 6.1 MES or MOPS 61mM pH 6.1, 25% v/v Glycerol, 20mg/mL protein in tris buffer, 30 microgram/mL inhibitor, 10% v/v PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2001-05-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structures of KDO8P Synthase in its binary Complex with substrate phosphoenol pyruvate RCSB Y RCSB 2000-11-14 REL PAI {[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY-6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC ACID HOH water PAI 300 2 PAI PAI 300 A H2O 301 3 HOH HOH 301 A H2O 302 3 HOH HOH 302 A H2O 303 3 HOH HOH 303 A H2O 304 3 HOH HOH 304 A H2O 305 3 HOH HOH 305 A H2O 306 3 HOH HOH 306 A H2O 307 3 HOH HOH 307 A H2O 308 3 HOH HOH 308 A H2O 309 3 HOH HOH 309 A H2O 310 3 HOH HOH 310 A H2O 311 3 HOH HOH 311 A H2O 312 3 HOH HOH 312 A H2O 313 3 HOH HOH 313 A H2O 314 3 HOH HOH 314 A H2O 315 3 HOH HOH 315 A H2O 316 3 HOH HOH 316 A H2O 317 3 HOH HOH 317 A H2O 318 3 HOH HOH 318 A H2O 319 3 HOH HOH 319 A H2O 320 3 HOH HOH 320 A H2O 321 3 HOH HOH 321 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A GLN 3 n 3 GLN 3 A LYS 4 n 4 LYS 4 A VAL 5 n 5 VAL 5 A VAL 6 n 6 VAL 6 A SER 7 n 7 SER 7 A ILE 8 n 8 ILE 8 A GLY 9 n 9 GLY 9 A ASP 10 n 10 ASP 10 A ILE 11 n 11 ILE 11 A ASN 12 n 12 ASN 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A ASN 15 n 15 ASN 15 A ASP 16 n 16 ASP 16 A LEU 17 n 17 LEU 17 A PRO 18 n 18 PRO 18 A PHE 19 n 19 PHE 19 A VAL 20 n 20 VAL 20 A LEU 21 n 21 LEU 21 A PHE 22 n 22 PHE 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A MET 25 n 25 MET 25 A ASN 26 n 26 ASN 26 A VAL 27 n 27 VAL 27 A LEU 28 n 28 LEU 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A ARG 31 n 31 ARG 31 A ASP 32 n 32 ASP 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A MET 35 n 35 MET 35 A ARG 36 n 36 ARG 36 A ILE 37 n 37 ILE 37 A CYS 38 n 38 CYS 38 A GLU 39 n 39 GLU 39 A HIS 40 n 40 HIS 40 A TYR 41 n 41 TYR 41 A VAL 42 n 42 VAL 42 A THR 43 n 43 THR 43 A VAL 44 n 44 VAL 44 A THR 45 n 45 THR 45 A GLN 46 n 46 GLN 46 A LYS 47 n 47 LYS 47 A LEU 48 n 48 LEU 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A PRO 51 n 51 PRO 51 A TYR 52 n 52 TYR 52 A VAL 53 n 53 VAL 53 A PHE 54 n 54 PHE 54 A LYS 55 n 55 LYS 55 A ALA 56 n 56 ALA 56 A SER 57 n 57 SER 57 A PHE 58 n 58 PHE 58 A ASP 59 n 59 ASP 59 A LYS 60 n 60 LYS 60 A ALA 61 n 61 ALA 61 A ASN 62 n 62 ASN 62 A ARG 63 n 63 ARG 63 A SER 64 n 64 SER 64 A SER 65 n 65 SER 65 A ILE 66 n 66 ILE 66 A HIS 67 n 67 HIS 67 A SER 68 n 68 SER 68 A TYR 69 n 69 TYR 69 A ARG 70 n 70 ARG 70 A GLY 71 n 71 GLY 71 A PRO 72 n 72 PRO 72 A GLY 73 n 73 GLY 73 A LEU 74 n 74 LEU 74 A GLU 75 n 75 GLU 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A MET 78 n 78 MET 78 A LYS 79 n 79 LYS 79 A ILE 80 n 80 ILE 80 A PHE 81 n 81 PHE 81 A GLN 82 n 82 GLN 82 A GLU 83 n 83 GLU 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A GLN 86 n 86 GLN 86 A THR 87 n 87 THR 87 A PHE 88 n 88 PHE 88 A GLY 89 n 89 GLY 89 A VAL 90 n 90 VAL 90 A LYS 91 n 91 LYS 91 A ILE 92 n 92 ILE 92 A ILE 93 n 93 ILE 93 A THR 94 n 94 THR 94 A ASP 95 n 95 ASP 95 A VAL 96 n 96 VAL 96 A HIS 97 n 97 HIS 97 A GLU 98 n 98 GLU 98 A PRO 99 n 99 PRO 99 A SER 100 n 100 SER 100 A GLN 101 n 101 GLN 101 A ALA 102 n 102 ALA 102 A GLN 103 n 103 GLN 103 A PRO 104 n 104 PRO 104 A VAL 105 n 105 VAL 105 A ALA 106 n 106 ALA 106 A ASP 107 n 107 ASP 107 A VAL 108 n 108 VAL 108 A VAL 109 n 109 VAL 109 A ASP 110 n 110 ASP 110 A VAL 111 n 111 VAL 111 A ILE 112 n 112 ILE 112 A GLN 113 n 113 GLN 113 A LEU 114 n 114 LEU 114 A PRO 115 n 115 PRO 115 A ALA 116 n 116 ALA 116 A PHE 117 n 117 PHE 117 A LEU 118 n 118 LEU 118 A ALA 119 n 119 ALA 119 A ARG 120 n 120 ARG 120 A GLN 121 n 121 GLN 121 A THR 122 n 122 THR 122 A ASP 123 n 123 ASP 123 A LEU 124 n 124 LEU 124 A VAL 125 n 125 VAL 125 A GLU 126 n 126 GLU 126 A ALA 127 n 127 ALA 127 A MET 128 n 128 MET 128 A ALA 129 n 129 ALA 129 A LYS 130 n 130 LYS 130 A THR 131 n 131 THR 131 A GLY 132 n 132 GLY 132 A ALA 133 n 133 ALA 133 A VAL 134 n 134 VAL 134 A ILE 135 n 135 ILE 135 A ASN 136 n 136 ASN 136 A VAL 137 n 137 VAL 137 A LYS 138 n 138 LYS 138 A LYS 139 n 139 LYS 139 A PRO 140 n 140 PRO 140 A GLN 141 n 141 GLN 141 A PHE 142 n 142 PHE 142 A VAL 143 n 143 VAL 143 A SER 144 n 144 SER 144 A PRO 145 n 145 PRO 145 A GLY 146 n 146 GLY 146 A GLN 147 n 147 GLN 147 A MET 148 n 148 MET 148 A GLY 149 n 149 GLY 149 A ASN 150 n 150 ASN 150 A ILE 151 n 151 ILE 151 A VAL 152 n 152 VAL 152 A ASP 153 n 153 ASP 153 A LYS 154 n 154 LYS 154 A PHE 155 n 155 PHE 155 A LYS 156 n 156 LYS 156 A GLU 157 n 157 GLU 157 A GLY 158 n 158 GLY 158 A GLY 159 n 159 GLY 159 A ASN 160 n 160 ASN 160 A GLU 161 n 161 GLU 161 A LYS 162 n 162 LYS 162 A VAL 163 n 163 VAL 163 A ILE 164 n 164 ILE 164 A LEU 165 n 165 LEU 165 A CYS 166 n 166 CYS 166 A ASP 167 n 167 ASP 167 A ARG 168 n 168 ARG 168 A GLY 169 n 169 GLY 169 A ALA 170 n 170 ALA 170 A ASN 171 n 171 ASN 171 A PHE 172 n 172 PHE 172 A GLY 173 n 173 GLY 173 A TYR 174 n 174 TYR 174 A ASP 175 n 175 ASP 175 A ASN 176 n 176 ASN 176 A LEU 177 n 177 LEU 177 A VAL 178 n 178 VAL 178 A VAL 179 n 179 VAL 179 A ASP 180 n 180 ASP 180 A MET 181 n 181 MET 181 A LEU 182 n 182 LEU 182 A GLY 183 n 183 GLY 183 A PHE 184 n 184 PHE 184 A SER 185 n 185 SER 185 A ILE 186 n 186 ILE 186 A MET 187 n 187 MET 187 A LYS 188 n 188 LYS 188 A LYS 189 n 189 LYS 189 A VAL 190 n 190 VAL 190 A SER 191 n 191 SER 191 A GLY 192 n 192 GLY 192 A ASN 193 n 193 ASN 193 A SER 194 n 194 SER 194 A PRO 195 n 195 PRO 195 A VAL 196 n 196 VAL 196 A ILE 197 n 197 ILE 197 A PHE 198 n 198 PHE 198 A ASP 199 n 199 ASP 199 A VAL 200 n 200 VAL 200 A THR 201 n 201 THR 201 A HIS 202 n 202 HIS 202 A ALA 203 n 203 ALA 203 A LEU 204 n 204 LEU 204 A GLN 205 n 205 GLN 205 A CYS 206 n 206 CYS 206 A ARG 207 n 207 ARG 207 A ASP 208 n 208 ASP 208 A PRO 209 n 209 PRO 209 A PHE 210 n 210 PHE 210 A GLY 211 n 211 GLY 211 A ALA 212 n 212 ALA 212 A ALA 213 n 213 ALA 213 A SER 214 n 214 SER 214 A GLY 215 n 215 GLY 215 A GLY 216 n 216 GLY 216 A ARG 217 n 217 ARG 217 A ARG 218 n 218 ARG 218 A ALA 219 n 219 ALA 219 A GLN 220 n 220 GLN 220 A VAL 221 n 221 VAL 221 A ALA 222 n 222 ALA 222 A GLU 223 n 223 GLU 223 A LEU 224 n 224 LEU 224 A ALA 225 n 225 ALA 225 A ARG 226 n 226 ARG 226 A ALA 227 n 227 ALA 227 A GLY 228 n 228 GLY 228 A MET 229 n 229 MET 229 A ALA 230 n 230 ALA 230 A VAL 231 n 231 VAL 231 A GLY 232 n 232 GLY 232 A LEU 233 n 233 LEU 233 A ALA 234 n 234 ALA 234 A GLY 235 n 235 GLY 235 A LEU 236 n 236 LEU 236 A PHE 237 n 237 PHE 237 A ILE 238 n 238 ILE 238 A GLU 239 n 239 GLU 239 A ALA 240 n 240 ALA 240 A HIS 241 n 241 HIS 241 A PRO 242 n 242 PRO 242 A ASP 243 n 243 ASP 243 A PRO 244 n 244 PRO 244 A GLU 245 n 245 GLU 245 A HIS 246 n 246 HIS 246 A ALA 247 n 247 ALA 247 A LYS 248 n 248 LYS 248 A CYS 249 n 249 CYS 249 A ASP 250 n 250 ASP 250 A GLY 251 n 251 GLY 251 A PRO 252 n 252 PRO 252 A SER 253 n 253 SER 253 A ALA 254 n 254 ALA 254 A LEU 255 n 255 LEU 255 A PRO 256 n 256 PRO 256 A LEU 257 n 257 LEU 257 A ALA 258 n 258 ALA 258 A LYS 259 n 259 LYS 259 A LEU 260 n 260 LEU 260 A GLU 261 n 261 GLU 261 A PRO 262 n 262 PRO 262 A PHE 263 n 263 PHE 263 A LEU 264 n 264 LEU 264 A LYS 265 n 265 LYS 265 A GLN 266 n 266 GLN 266 A MET 267 n 267 MET 267 A LYS 268 n 268 LYS 268 A ALA 269 n 269 ALA 269 A ILE 270 n 270 ILE 270 A ASP 271 n 271 ASP 271 A ASP 272 n 272 ASP 272 A LEU 273 n 273 LEU 273 A VAL 274 n 274 VAL 274 A LYS 275 n 275 LYS 275 A GLY 276 n 276 GLY 276 A PHE 277 n 277 PHE 277 A GLU 278 n 278 GLU 278 A GLU 279 n 279 GLU 279 A LEU 280 n 280 LEU 280 A ASP 281 n 281 ASP 281 A THR 282 n 282 THR 282 A SER 283 n 283 SER 283 A LYS 284 n 284 LYS 284 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 4 tetrameric 18000 -85 36760 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_575 -x,-y+2,z crystal symmetry operation 0.0000000000 235.2000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_556 -x,y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 117.6000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_576 x,-y+2,-z+1 crystal symmetry operation 0.0000000000 235.2000000000 117.6000000000 A N ILE 8 A N ILE 8 A O ILE 11 A O ILE 11 A N ILE 93 A N ILE 93 A O PHE 54 A O PHE 54 A N VAL 53 A N VAL 53 A O LEU 21 A O LEU 21 A O VAL 20 A O VAL 20 A N LEU 236 A N LEU 236 A N GLY 235 A N GLY 235 A O VAL 196 A O VAL 196 A N ILE 197 A N ILE 197 A O LEU 165 A O LEU 165 A N ILE 164 A N ILE 164 A O ILE 135 A O ILE 135 A O ASN 136 A O ASN 136 A N LEU 114 A N LEU 114 A N ALA 170 A N ALA 170 A O VAL 178 A O VAL 178 A N HIS 241 A N HIS 241 A O LEU 255 A O LEU 255 1 A ARG 207 A ARG 207 0 Y 1 A ASP 208 A ASP 208 0 Y 1 A PRO 209 A PRO 209 0 Y 1 A PHE 210 A PHE 210 0 Y 1 A GLY 211 A GLY 211 0 Y 1 A ALA 212 A ALA 212 0 Y 1 A ALA 213 A ALA 213 0 Y 1 A SER 214 A SER 214 0 Y 1 A GLY 215 A GLY 215 0 Y 1 A GLY 216 A GLY 216 0 Y 1 A A O N LEU GLN 204 205 1.51 1 A A O O CYS PRO 206 209 2.10 1 A LEU 204 -39.73 1 A A C N LEU GLN 204 205 1.09 1 13.97 2.30 115.30 129.27 A A A CA CB CG LEU LEU LEU 33 33 33 N 1 16.99 2.70 111.00 127.99 A A A N CA C SER SER SER 65 65 65 N 1 9.81 1.50 119.30 129.11 A A A C N CA GLU PRO PRO 98 99 99 Y 1 30.92 2.20 117.20 148.12 A A A CA C N LEU LEU GLN 204 204 205 Y 1 -41.00 1.60 122.70 81.70 A A A O C N LEU LEU GLN 204 204 205 Y 1 27.14 2.50 121.70 148.84 A A A C N CA LEU GLN GLN 204 205 205 Y 1 -14.83 2.10 128.40 113.57 A A A C N CD ASP PRO PRO 208 209 209 Y 1 -19.49 2.70 111.00 91.51 A A A N CA C PHE PHE PHE 210 210 210 N 1 14.43 1.50 119.30 133.73 A A A C N CA ASP PRO PRO 243 244 244 Y 1 -17.62 2.10 128.40 110.78 A A A C N CD ASP PRO PRO 243 244 244 Y 1 9.17 1.10 114.20 123.37 A A A CA CB SG CYS CYS CYS 249 249 249 N 1 A A C N LEU GLN 204 205 -0.249 0.023 1.336 1.087 Y 1 A A CD N PRO PRO 209 209 -0.253 0.014 1.474 1.221 N 1 A ALA 14 -171.69 143.61 1 A PRO 18 -23.05 142.50 1 A PHE 19 -58.13 99.84 1 A ASN 26 -92.84 -113.54 1 A LEU 28 -68.32 83.80 1 A CYS 38 -64.50 -74.79 1 A THR 43 -49.18 -74.37 1 A LYS 60 -89.04 -104.32 1 A ALA 61 75.02 -64.22 1 A ARG 63 88.40 -131.51 1 A ILE 66 71.40 -29.00 1 A HIS 67 177.14 -30.75 1 A SER 68 -11.62 74.79 1 A PRO 72 -32.83 -27.31 1 A LEU 74 -50.74 -73.50 1 A GLU 75 -32.62 -74.68 1 A GLN 82 -48.03 -13.96 1 A LYS 85 -38.29 -89.88 1 A PHE 88 -152.29 28.88 1 A HIS 97 -130.64 -54.70 1 A PRO 99 -3.82 -72.04 1 A SER 100 -26.24 -63.97 1 A GLN 101 -67.36 15.77 1 A PRO 104 -55.31 -70.77 1 A ALA 106 -62.85 74.79 1 A ASP 107 -167.81 -66.20 1 A VAL 111 -114.82 66.27 1 A ILE 112 -41.58 153.09 1 A ALA 119 -48.74 -84.71 1 A THR 122 60.78 -84.92 1 A ASP 123 -48.54 -6.95 1 A ALA 127 -49.65 -17.23 1 A THR 131 -164.07 -67.33 1 A GLN 141 -67.13 0.05 1 A ILE 151 -138.57 -39.59 1 A LYS 162 -60.49 71.12 1 A ASP 175 25.75 82.36 1 A ASN 176 177.55 154.05 1 A MET 181 -57.68 -8.94 1 A THR 201 -69.37 -70.60 1 A ALA 203 -23.07 -89.97 1 A LEU 204 -64.15 47.10 1 A ALA 212 93.26 -83.69 1 A SER 214 149.24 154.26 1 A ARG 217 56.70 -125.87 1 A ARG 218 91.11 152.08 1 A GLN 220 -153.36 65.22 1 A HIS 241 166.79 155.44 1 A PRO 242 -56.40 -92.69 1 A PRO 244 35.21 -54.98 1 A GLU 245 148.77 159.37 1 A ASP 250 -157.69 -29.78 1 A PRO 252 -112.02 -90.44 1 A ASP 272 -25.30 -66.49 1 A PHE 277 -9.12 117.51 1 A GLU 279 -20.97 124.19 0.2420000 0.2210000 0.2250000 2.4 8.0 360 7501 7041 Random 1 3 3 MOLECULAR REPLACEMENT Engh & Huber 2.4 8.0 21 2210 25 0 2164 0.017 25.5 2.2 2.4 46.7 2.27 30 1G7V 30388 26690 1 1 0.0910000 1 14 3.6 71 0.1430000 2.3 2.4 1 2.1 47.4 phasing AMoRE refinement X-PLOR 3.1 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR 1 N N 2 N N 3 N N A ASP 32 A ASP 32 HELX_P A LEU 48 A LEU 48 1 1 17 A GLY 73 A GLY 73 HELX_P A ILE 80 A ILE 80 1 2 8 A ILE 80 A ILE 80 HELX_P A PHE 88 A PHE 88 1 3 9 A GLU 98 A GLU 98 HELX_P A GLN 103 A GLN 103 5 4 6 A PRO 115 A PRO 115 HELX_P A ALA 119 A ALA 119 5 5 5 A LEU 118 A LEU 118 HELX_P A GLN 121 A GLN 121 5 6 4 A THR 122 A THR 122 HELX_P A MET 128 A MET 128 1 7 7 A SER 144 A SER 144 HELX_P A GLN 147 A GLN 147 5 8 4 A MET 148 A MET 148 HELX_P A GLU 157 A GLU 157 1 9 10 A LEU 182 A LEU 182 HELX_P A SER 191 A SER 191 1 10 10 A VAL 200 A VAL 200 HELX_P A ASP 208 A ASP 208 1 11 9 A GLN 220 A GLN 220 HELX_P A ALA 230 A ALA 230 1 12 11 A LEU 260 A LEU 260 HELX_P A LYS 275 A LYS 275 1 13 16 LYASE beta-alpha-barrels, lyase, lipopolysaccharide KDSA_ECOLI UNP 1 1 P0A715 MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK 1 284 1G7V 1 284 P0A715 A 1 1 284 2 8 2 2 anti-parallel parallel parallel parallel parallel parallel parallel parallel anti-parallel parallel A SER 7 A SER 7 A ILE 8 A ILE 8 A ILE 11 A ILE 11 A ASN 12 A ASN 12 A ILE 92 A ILE 92 A ILE 93 A ILE 93 A TYR 52 A TYR 52 A SER 57 A SER 57 A VAL 20 A VAL 20 A VAL 27 A VAL 27 A GLY 235 A GLY 235 A PHE 237 A PHE 237 A VAL 196 A VAL 196 A ASP 199 A ASP 199 A VAL 163 A VAL 163 A ASP 167 A ASP 167 A ILE 135 A ILE 135 A LYS 139 A LYS 139 A GLN 113 A GLN 113 A LEU 114 A LEU 114 A ALA 170 A ALA 170 A ASN 171 A ASN 171 A LEU 177 A LEU 177 A VAL 178 A VAL 178 A ALA 240 A ALA 240 A HIS 241 A HIS 241 A LEU 255 A LEU 255 A PRO 256 A PRO 256 BINDING SITE FOR RESIDUE PAI A 300 A PAI 300 Software 13 A VAL 27 A VAL 27 13 1_555 A ASN 62 A ASN 62 13 1_555 A ARG 63 A ARG 63 13 1_555 A PHE 117 A PHE 117 13 1_555 A GLN 141 A GLN 141 13 1_555 A ARG 168 A ARG 168 13 1_555 A HIS 202 A HIS 202 13 1_555 A GLN 205 A GLN 205 13 1_555 A CYS 206 A CYS 206 13 1_555 A ALA 247 A ALA 247 13 1_555 A ASP 250 A ASP 250 13 1_555 A GLY 251 A GLY 251 13 1_555 A PRO 252 A PRO 252 13 1_555 197 I 2 3