1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Rozek, A. Friedrich, C.L. Hancock, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US Biochemistry BICHAW 0033 0006-2960 39 15765 15774 10.1021/bi000714m 11123901 Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles. 2000 10.2210/pdb1g89/pdb pdb_00001g89 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1908.299 INDOLICIDIN 1 syn polymer no yes ILPWKWPWWPWRR(NH2) ILPWKWPWWPWRRX A polypeptide(L) n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2000-11-29 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id proton chemical shifts Same peptide complexed with sodium dodecyl sulfate micelles. RCSB Y RCSB 2000-11-16 REL REL The peptide was chemically synthesized. The sequence occurs naturally in Bos taurus (bovine) neutrophils. The sequence is naturally amidated at the C-terminus. sample This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 100 16 2D NOESY DQF-COSY 2D TOCSY 400 mM DPC 4.7 ambient 310 K The structures are based on 118 (non-redundant) NOE-derived distance restraints, 61 inter-residue and 57 intra-residue distance geometry and simulated annealing 3 closest to the average 2 mM indolicidin; 400 mM dodecylphosphocholine 10 mM phosphate buffer; 90% H2O,10% D2O Delaglio processing NMRPipe Johnson data analysis NMRView 4.0.3 Brunger refinement X-PLOR 3.851 600 Bruker AMX 500 Varian UNITY ILE 1 n 1 ILE 1 A LEU 2 n 2 LEU 2 A PRO 3 n 3 PRO 3 A TRP 4 n 4 TRP 4 A LYS 5 n 5 LYS 5 A TRP 6 n 6 TRP 6 A PRO 7 n 7 PRO 7 A TRP 8 n 8 TRP 8 A TRP 9 n 9 TRP 9 A PRO 10 n 10 PRO 10 A TRP 11 n 11 TRP 11 A ARG 12 n 12 ARG 12 A ARG 13 n 13 ARG 13 A ARG 13 n 14 NH2 14 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 12 0.317 SIDE CHAIN 1 A ARG 13 0.317 SIDE CHAIN 2 A ARG 12 0.204 SIDE CHAIN 2 A ARG 13 0.123 SIDE CHAIN 3 A ARG 12 0.273 SIDE CHAIN 3 A ARG 13 0.318 SIDE CHAIN 4 A ARG 12 0.314 SIDE CHAIN 4 A ARG 13 0.312 SIDE CHAIN 5 A ARG 12 0.316 SIDE CHAIN 5 A ARG 13 0.274 SIDE CHAIN 6 A ARG 12 0.234 SIDE CHAIN 6 A ARG 13 0.284 SIDE CHAIN 7 A ARG 12 0.210 SIDE CHAIN 7 A ARG 13 0.238 SIDE CHAIN 8 A ARG 12 0.254 SIDE CHAIN 8 A ARG 13 0.314 SIDE CHAIN 9 A ARG 12 0.098 SIDE CHAIN 9 A ARG 13 0.209 SIDE CHAIN 10 A ARG 12 0.215 SIDE CHAIN 10 A ARG 13 0.081 SIDE CHAIN 11 A ARG 12 0.316 SIDE CHAIN 11 A ARG 13 0.230 SIDE CHAIN 12 A ARG 13 0.315 SIDE CHAIN 13 A ARG 12 0.237 SIDE CHAIN 14 A ARG 12 0.217 SIDE CHAIN 14 A ARG 13 0.291 SIDE CHAIN 15 A ARG 12 0.272 SIDE CHAIN 15 A ARG 13 0.273 SIDE CHAIN 16 A ARG 12 0.291 SIDE CHAIN 16 A ARG 13 0.250 SIDE CHAIN 1 A PRO 3 -73.24 -169.66 1 A TRP 8 28.12 84.72 1 A TRP 11 -108.96 -168.95 2 A LEU 2 56.94 85.86 2 A TRP 4 -157.76 49.48 2 A TRP 8 28.17 87.79 2 A TRP 9 -38.94 150.08 2 A TRP 11 -108.37 -168.35 3 A LEU 2 60.93 73.36 3 A TRP 4 -146.52 47.59 3 A TRP 8 28.00 84.64 3 A TRP 11 -107.51 -167.76 4 A PRO 3 -73.10 -169.42 4 A TRP 4 -164.06 43.83 4 A TRP 8 27.96 85.00 4 A TRP 11 -106.80 -169.82 4 A ARG 12 36.25 73.52 5 A LEU 2 -41.48 104.01 5 A TRP 8 27.91 84.59 5 A TRP 9 -43.79 150.74 5 A TRP 11 -105.37 -169.14 6 A TRP 4 -164.20 40.97 6 A TRP 8 29.87 84.56 6 A TRP 9 -37.09 149.42 6 A TRP 11 -112.09 -168.60 7 A TRP 4 -177.88 44.78 7 A TRP 8 28.17 83.68 7 A TRP 9 -43.62 150.49 7 A ARG 12 -150.43 74.22 8 A PRO 3 -73.00 -168.84 8 A TRP 4 -152.33 63.05 8 A TRP 8 28.07 85.56 8 A ARG 12 36.28 59.60 9 A LEU 2 26.61 73.09 9 A TRP 8 28.16 84.48 9 A ARG 12 35.09 65.75 10 A LEU 2 -40.93 104.94 10 A TRP 4 -143.62 52.60 10 A TRP 8 28.04 83.90 10 A ARG 12 34.92 47.18 11 A TRP 4 -150.27 62.21 11 A TRP 8 28.26 85.32 11 A TRP 9 -40.02 150.37 11 A TRP 11 -111.18 -167.55 12 A LEU 2 56.17 110.00 12 A TRP 8 27.76 86.77 12 A TRP 11 -105.08 -168.35 13 A LEU 2 -39.95 136.23 13 A PRO 3 -74.29 -168.51 13 A TRP 4 -146.47 58.84 13 A TRP 8 28.90 87.34 13 A TRP 9 -39.92 149.99 13 A TRP 11 -115.35 -165.24 14 A LEU 2 54.49 70.82 14 A TRP 4 -146.18 43.08 14 A TRP 8 29.33 81.98 14 A TRP 9 -40.08 151.78 14 A TRP 11 -106.52 -164.83 15 A TRP 4 -147.19 45.46 15 A TRP 6 -47.97 151.02 15 A TRP 8 28.99 79.00 15 A TRP 9 -45.51 150.43 15 A TRP 11 -107.13 -167.40 15 A ARG 12 40.99 72.95 16 A PRO 3 -73.36 -169.13 16 A TRP 8 27.94 85.44 16 A TRP 11 -108.43 -169.11 STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO DODECYLPHOSPHOCHOLINE MICELLES 1 N N covale 1.306 both A ARG 13 A C ARG 13 1_555 A NH2 14 A N NH2 14 1_555 ANTIMICROBIAL PROTEIN poly-L-proline II helix, half turn, ANTIMICROBIAL PROTEIN INDC_BOVIN UNP 1 131 P33046 ILPWKWPWWPWRR 131 143 1G89 1 13 P33046 A 1 1 13 BINDING SITE FOR RESIDUE NH2 A 14 A NH2 14 Software 2 A ARG 12 A ARG 12 2 1_555 A ARG 13 A ARG 13 2 1_555 1 P 1