1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rozek, A.
Friedrich, C.L.
Hancock, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
39
15765
15774
10.1021/bi000714m
11123901
Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles.
2000
10.2210/pdb1g89/pdb
pdb_00001g89
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1908.299
INDOLICIDIN
1
syn
polymer
no
yes
ILPWKWPWWPWRR(NH2)
ILPWKWPWWPWRRX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-11-29
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
proton chemical shifts
Same peptide complexed with sodium dodecyl sulfate micelles.
RCSB
Y
RCSB
2000-11-16
REL
REL
The peptide was chemically synthesized. The sequence occurs naturally in Bos taurus (bovine) neutrophils. The sequence is naturally amidated at the C-terminus.
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
100
16
2D NOESY
DQF-COSY
2D TOCSY
400 mM DPC
4.7
ambient
310
K
The structures are based on 118 (non-redundant) NOE-derived distance restraints, 61 inter-residue and 57 intra-residue
distance geometry and simulated annealing
3
closest to the average
2 mM indolicidin; 400 mM dodecylphosphocholine
10 mM phosphate buffer; 90% H2O,10% D2O
Delaglio
processing
NMRPipe
Johnson
data analysis
NMRView
4.0.3
Brunger
refinement
X-PLOR
3.851
600
Bruker
AMX
500
Varian
UNITY
ILE
1
n
1
ILE
1
A
LEU
2
n
2
LEU
2
A
PRO
3
n
3
PRO
3
A
TRP
4
n
4
TRP
4
A
LYS
5
n
5
LYS
5
A
TRP
6
n
6
TRP
6
A
PRO
7
n
7
PRO
7
A
TRP
8
n
8
TRP
8
A
TRP
9
n
9
TRP
9
A
PRO
10
n
10
PRO
10
A
TRP
11
n
11
TRP
11
A
ARG
12
n
12
ARG
12
A
ARG
13
n
13
ARG
13
A
ARG
13
n
14
NH2
14
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
12
0.317
SIDE CHAIN
1
A
ARG
13
0.317
SIDE CHAIN
2
A
ARG
12
0.204
SIDE CHAIN
2
A
ARG
13
0.123
SIDE CHAIN
3
A
ARG
12
0.273
SIDE CHAIN
3
A
ARG
13
0.318
SIDE CHAIN
4
A
ARG
12
0.314
SIDE CHAIN
4
A
ARG
13
0.312
SIDE CHAIN
5
A
ARG
12
0.316
SIDE CHAIN
5
A
ARG
13
0.274
SIDE CHAIN
6
A
ARG
12
0.234
SIDE CHAIN
6
A
ARG
13
0.284
SIDE CHAIN
7
A
ARG
12
0.210
SIDE CHAIN
7
A
ARG
13
0.238
SIDE CHAIN
8
A
ARG
12
0.254
SIDE CHAIN
8
A
ARG
13
0.314
SIDE CHAIN
9
A
ARG
12
0.098
SIDE CHAIN
9
A
ARG
13
0.209
SIDE CHAIN
10
A
ARG
12
0.215
SIDE CHAIN
10
A
ARG
13
0.081
SIDE CHAIN
11
A
ARG
12
0.316
SIDE CHAIN
11
A
ARG
13
0.230
SIDE CHAIN
12
A
ARG
13
0.315
SIDE CHAIN
13
A
ARG
12
0.237
SIDE CHAIN
14
A
ARG
12
0.217
SIDE CHAIN
14
A
ARG
13
0.291
SIDE CHAIN
15
A
ARG
12
0.272
SIDE CHAIN
15
A
ARG
13
0.273
SIDE CHAIN
16
A
ARG
12
0.291
SIDE CHAIN
16
A
ARG
13
0.250
SIDE CHAIN
1
A
PRO
3
-73.24
-169.66
1
A
TRP
8
28.12
84.72
1
A
TRP
11
-108.96
-168.95
2
A
LEU
2
56.94
85.86
2
A
TRP
4
-157.76
49.48
2
A
TRP
8
28.17
87.79
2
A
TRP
9
-38.94
150.08
2
A
TRP
11
-108.37
-168.35
3
A
LEU
2
60.93
73.36
3
A
TRP
4
-146.52
47.59
3
A
TRP
8
28.00
84.64
3
A
TRP
11
-107.51
-167.76
4
A
PRO
3
-73.10
-169.42
4
A
TRP
4
-164.06
43.83
4
A
TRP
8
27.96
85.00
4
A
TRP
11
-106.80
-169.82
4
A
ARG
12
36.25
73.52
5
A
LEU
2
-41.48
104.01
5
A
TRP
8
27.91
84.59
5
A
TRP
9
-43.79
150.74
5
A
TRP
11
-105.37
-169.14
6
A
TRP
4
-164.20
40.97
6
A
TRP
8
29.87
84.56
6
A
TRP
9
-37.09
149.42
6
A
TRP
11
-112.09
-168.60
7
A
TRP
4
-177.88
44.78
7
A
TRP
8
28.17
83.68
7
A
TRP
9
-43.62
150.49
7
A
ARG
12
-150.43
74.22
8
A
PRO
3
-73.00
-168.84
8
A
TRP
4
-152.33
63.05
8
A
TRP
8
28.07
85.56
8
A
ARG
12
36.28
59.60
9
A
LEU
2
26.61
73.09
9
A
TRP
8
28.16
84.48
9
A
ARG
12
35.09
65.75
10
A
LEU
2
-40.93
104.94
10
A
TRP
4
-143.62
52.60
10
A
TRP
8
28.04
83.90
10
A
ARG
12
34.92
47.18
11
A
TRP
4
-150.27
62.21
11
A
TRP
8
28.26
85.32
11
A
TRP
9
-40.02
150.37
11
A
TRP
11
-111.18
-167.55
12
A
LEU
2
56.17
110.00
12
A
TRP
8
27.76
86.77
12
A
TRP
11
-105.08
-168.35
13
A
LEU
2
-39.95
136.23
13
A
PRO
3
-74.29
-168.51
13
A
TRP
4
-146.47
58.84
13
A
TRP
8
28.90
87.34
13
A
TRP
9
-39.92
149.99
13
A
TRP
11
-115.35
-165.24
14
A
LEU
2
54.49
70.82
14
A
TRP
4
-146.18
43.08
14
A
TRP
8
29.33
81.98
14
A
TRP
9
-40.08
151.78
14
A
TRP
11
-106.52
-164.83
15
A
TRP
4
-147.19
45.46
15
A
TRP
6
-47.97
151.02
15
A
TRP
8
28.99
79.00
15
A
TRP
9
-45.51
150.43
15
A
TRP
11
-107.13
-167.40
15
A
ARG
12
40.99
72.95
16
A
PRO
3
-73.36
-169.13
16
A
TRP
8
27.94
85.44
16
A
TRP
11
-108.43
-169.11
STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO DODECYLPHOSPHOCHOLINE MICELLES
1
N
N
covale
1.306
both
A
ARG
13
A
C
ARG
13
1_555
A
NH2
14
A
N
NH2
14
1_555
ANTIMICROBIAL PROTEIN
poly-L-proline II helix, half turn, ANTIMICROBIAL PROTEIN
INDC_BOVIN
UNP
1
131
P33046
ILPWKWPWWPWRR
131
143
1G89
1
13
P33046
A
1
1
13
BINDING SITE FOR RESIDUE NH2 A 14
A
NH2
14
Software
2
A
ARG
12
A
ARG
12
2
1_555
A
ARG
13
A
ARG
13
2
1_555
1
P 1