1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Rozek, A. Friedrich, C.L. Hancock, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US Biochemistry BICHAW 0033 0006-2960 39 15765 15774 10.1021/bi000714m 11123901 Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles. 2000 10.2210/pdb1g8c/pdb pdb_00001g8c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1908.299 INDOLICIDIN 1 syn polymer no yes ILPWKWPWWPWRR(NH2) ILPWKWPWWPWRRX A polypeptide(L) n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2000-11-29 1 1 2008-04-01 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id same peptide complexed with dodecylphosphocholine proton chemical shifts RCSB Y RCSB 2000-11-16 REL REL The peptide was chemically synthesized. The sequence occurs naturally in Bos taurus (bovine) neutrophils. The sequence is naturally amidated at C-terminus. sample This structure was determined using standard 2D homonuclear techniques structures with the least restraint violations,structures with the lowest energy 100 16 2D NOESY DQF-COSY 2D TOCSY 240 mM SDS 4.7 ambient 310 K The structures are based on 129 (non-redundant) NOE-derived distance restraints, 47 inter-residue and 82 intra-residue distance geometry and simulated annealing 16 closest to the average 2 mM indolicidin, 240 mM sodium dodecyl sulfate 10 mM phosphate buffer; 90% H2O, 10% D2O Delaglio processing NMRPipe Johnson data analysis NMRView 4.0.3 Brunger refinement X-PLOR 3.851 600 Bruker AMX 500 Varian UNITY ILE 1 n 1 ILE 1 A LEU 2 n 2 LEU 2 A PRO 3 n 3 PRO 3 A TRP 4 n 4 TRP 4 A LYS 5 n 5 LYS 5 A TRP 6 n 6 TRP 6 A PRO 7 n 7 PRO 7 A TRP 8 n 8 TRP 8 A TRP 9 n 9 TRP 9 A PRO 10 n 10 PRO 10 A TRP 11 n 11 TRP 11 A ARG 12 n 12 ARG 12 A ARG 13 n 13 ARG 13 A ARG 13 n 14 NH2 14 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 12 0.228 SIDE CHAIN 2 A ARG 12 0.154 SIDE CHAIN 2 A ARG 13 0.251 SIDE CHAIN 3 A ARG 12 0.306 SIDE CHAIN 3 A ARG 13 0.148 SIDE CHAIN 4 A ARG 12 0.316 SIDE CHAIN 4 A ARG 13 0.197 SIDE CHAIN 5 A ARG 13 0.305 SIDE CHAIN 6 A ARG 12 0.213 SIDE CHAIN 6 A ARG 13 0.317 SIDE CHAIN 7 A ARG 12 0.260 SIDE CHAIN 7 A ARG 13 0.102 SIDE CHAIN 8 A ARG 12 0.251 SIDE CHAIN 8 A ARG 13 0.302 SIDE CHAIN 9 A ARG 12 0.235 SIDE CHAIN 10 A ARG 12 0.310 SIDE CHAIN 10 A ARG 13 0.316 SIDE CHAIN 11 A ARG 12 0.297 SIDE CHAIN 11 A ARG 13 0.246 SIDE CHAIN 12 A ARG 12 0.243 SIDE CHAIN 12 A ARG 13 0.145 SIDE CHAIN 13 A ARG 13 0.238 SIDE CHAIN 14 A ARG 12 0.306 SIDE CHAIN 14 A ARG 13 0.264 SIDE CHAIN 15 A ARG 12 0.264 SIDE CHAIN 15 A ARG 13 0.245 SIDE CHAIN 16 A ARG 12 0.271 SIDE CHAIN 16 A ARG 13 0.122 SIDE CHAIN 1 A PRO 3 -74.86 -72.42 1 A TRP 4 -177.39 87.75 1 A TRP 8 -140.77 40.88 1 A TRP 9 -48.54 104.19 2 A LEU 2 -52.68 174.55 2 A PRO 3 -69.61 -170.17 2 A TRP 8 -179.11 99.89 2 A PRO 10 -69.07 75.23 2 A TRP 11 -36.08 -71.49 3 A TRP 8 178.33 97.34 3 A TRP 9 -119.11 76.03 4 A TRP 4 179.95 94.08 4 A TRP 8 -179.15 99.03 4 A TRP 9 -110.32 75.90 4 A TRP 11 -36.78 -34.27 5 A TRP 4 -167.77 -57.51 5 A LYS 5 -92.47 35.05 5 A TRP 8 -168.14 82.68 5 A TRP 11 -27.47 -61.39 5 A ARG 12 -39.60 124.99 6 A TRP 4 -146.23 -67.62 6 A LYS 5 -94.86 54.21 6 A TRP 8 179.49 100.59 6 A TRP 9 -108.28 76.32 6 A ARG 12 -38.38 137.59 7 A TRP 4 -178.09 -47.22 7 A LYS 5 -104.77 65.21 7 A TRP 8 177.33 102.64 7 A TRP 9 -113.50 72.98 8 A TRP 4 -113.23 63.51 8 A TRP 8 -179.35 100.88 8 A TRP 9 -115.05 73.46 8 A ARG 12 -69.82 -179.56 9 A TRP 4 -176.92 -47.48 9 A LYS 5 -91.96 52.03 9 A TRP 8 -172.27 98.17 9 A PRO 10 -67.63 98.71 9 A TRP 11 -38.84 -77.11 10 A TRP 4 -102.18 -89.15 10 A TRP 9 -41.66 100.67 10 A TRP 11 -28.00 -60.30 11 A TRP 8 -167.85 43.96 11 A TRP 9 -51.88 106.04 11 A TRP 11 -28.84 -60.78 11 A ARG 12 -35.20 118.08 12 A TRP 4 -178.43 66.11 12 A LYS 5 -144.13 19.92 12 A TRP 8 -177.06 76.38 12 A TRP 11 -28.80 -59.99 12 A ARG 12 -32.30 120.59 13 A TRP 4 -126.75 -72.96 13 A TRP 8 178.71 101.77 13 A TRP 11 -29.36 -63.99 13 A ARG 12 -51.78 107.99 14 A LYS 5 -96.10 53.09 14 A TRP 8 -174.13 99.71 14 A TRP 9 -116.95 73.52 14 A ARG 12 -125.49 -157.23 15 A TRP 4 -178.79 -46.96 15 A TRP 9 -49.25 105.13 15 A PRO 10 -69.66 -158.83 16 A TRP 4 -109.59 40.25 16 A TRP 8 176.54 102.26 16 A TRP 11 -28.73 -60.92 STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO SODIUM DODECYL SULFATE MICELLES 1 N N covale 1.304 both A ARG 13 A C ARG 13 1_555 A NH2 14 A N NH2 14 1_555 ANTIMICROBIAL PROTEIN poly-L-proline II helix, ANTIMICROBIAL PROTEIN INDC_BOVIN UNP 1 131 P33046 ILPWKWPWWPWRR 131 143 1G8C 1 13 P33046 A 1 1 13 BINDING SITE FOR RESIDUE NH2 A 14 A NH2 14 Software 2 A ARG 12 A ARG 12 2 1_555 A ARG 13 A ARG 13 2 1_555 1 P 1