1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rozek, A.
Friedrich, C.L.
Hancock, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
39
15765
15774
10.1021/bi000714m
11123901
Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles.
2000
10.2210/pdb1g8c/pdb
pdb_00001g8c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1908.299
INDOLICIDIN
1
syn
polymer
no
yes
ILPWKWPWWPWRR(NH2)
ILPWKWPWWPWRRX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-11-29
1
1
2008-04-01
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
same peptide complexed with dodecylphosphocholine
proton chemical shifts
RCSB
Y
RCSB
2000-11-16
REL
REL
The peptide was chemically synthesized. The sequence occurs naturally in Bos taurus (bovine) neutrophils. The sequence is naturally amidated at C-terminus.
sample
This structure was determined using standard 2D homonuclear techniques
structures with the least restraint violations,structures with the lowest energy
100
16
2D NOESY
DQF-COSY
2D TOCSY
240 mM SDS
4.7
ambient
310
K
The structures are based on 129 (non-redundant) NOE-derived distance restraints, 47 inter-residue and 82 intra-residue
distance geometry and simulated annealing
16
closest to the average
2 mM indolicidin, 240 mM sodium dodecyl sulfate
10 mM phosphate buffer; 90% H2O, 10% D2O
Delaglio
processing
NMRPipe
Johnson
data analysis
NMRView
4.0.3
Brunger
refinement
X-PLOR
3.851
600
Bruker
AMX
500
Varian
UNITY
ILE
1
n
1
ILE
1
A
LEU
2
n
2
LEU
2
A
PRO
3
n
3
PRO
3
A
TRP
4
n
4
TRP
4
A
LYS
5
n
5
LYS
5
A
TRP
6
n
6
TRP
6
A
PRO
7
n
7
PRO
7
A
TRP
8
n
8
TRP
8
A
TRP
9
n
9
TRP
9
A
PRO
10
n
10
PRO
10
A
TRP
11
n
11
TRP
11
A
ARG
12
n
12
ARG
12
A
ARG
13
n
13
ARG
13
A
ARG
13
n
14
NH2
14
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
12
0.228
SIDE CHAIN
2
A
ARG
12
0.154
SIDE CHAIN
2
A
ARG
13
0.251
SIDE CHAIN
3
A
ARG
12
0.306
SIDE CHAIN
3
A
ARG
13
0.148
SIDE CHAIN
4
A
ARG
12
0.316
SIDE CHAIN
4
A
ARG
13
0.197
SIDE CHAIN
5
A
ARG
13
0.305
SIDE CHAIN
6
A
ARG
12
0.213
SIDE CHAIN
6
A
ARG
13
0.317
SIDE CHAIN
7
A
ARG
12
0.260
SIDE CHAIN
7
A
ARG
13
0.102
SIDE CHAIN
8
A
ARG
12
0.251
SIDE CHAIN
8
A
ARG
13
0.302
SIDE CHAIN
9
A
ARG
12
0.235
SIDE CHAIN
10
A
ARG
12
0.310
SIDE CHAIN
10
A
ARG
13
0.316
SIDE CHAIN
11
A
ARG
12
0.297
SIDE CHAIN
11
A
ARG
13
0.246
SIDE CHAIN
12
A
ARG
12
0.243
SIDE CHAIN
12
A
ARG
13
0.145
SIDE CHAIN
13
A
ARG
13
0.238
SIDE CHAIN
14
A
ARG
12
0.306
SIDE CHAIN
14
A
ARG
13
0.264
SIDE CHAIN
15
A
ARG
12
0.264
SIDE CHAIN
15
A
ARG
13
0.245
SIDE CHAIN
16
A
ARG
12
0.271
SIDE CHAIN
16
A
ARG
13
0.122
SIDE CHAIN
1
A
PRO
3
-74.86
-72.42
1
A
TRP
4
-177.39
87.75
1
A
TRP
8
-140.77
40.88
1
A
TRP
9
-48.54
104.19
2
A
LEU
2
-52.68
174.55
2
A
PRO
3
-69.61
-170.17
2
A
TRP
8
-179.11
99.89
2
A
PRO
10
-69.07
75.23
2
A
TRP
11
-36.08
-71.49
3
A
TRP
8
178.33
97.34
3
A
TRP
9
-119.11
76.03
4
A
TRP
4
179.95
94.08
4
A
TRP
8
-179.15
99.03
4
A
TRP
9
-110.32
75.90
4
A
TRP
11
-36.78
-34.27
5
A
TRP
4
-167.77
-57.51
5
A
LYS
5
-92.47
35.05
5
A
TRP
8
-168.14
82.68
5
A
TRP
11
-27.47
-61.39
5
A
ARG
12
-39.60
124.99
6
A
TRP
4
-146.23
-67.62
6
A
LYS
5
-94.86
54.21
6
A
TRP
8
179.49
100.59
6
A
TRP
9
-108.28
76.32
6
A
ARG
12
-38.38
137.59
7
A
TRP
4
-178.09
-47.22
7
A
LYS
5
-104.77
65.21
7
A
TRP
8
177.33
102.64
7
A
TRP
9
-113.50
72.98
8
A
TRP
4
-113.23
63.51
8
A
TRP
8
-179.35
100.88
8
A
TRP
9
-115.05
73.46
8
A
ARG
12
-69.82
-179.56
9
A
TRP
4
-176.92
-47.48
9
A
LYS
5
-91.96
52.03
9
A
TRP
8
-172.27
98.17
9
A
PRO
10
-67.63
98.71
9
A
TRP
11
-38.84
-77.11
10
A
TRP
4
-102.18
-89.15
10
A
TRP
9
-41.66
100.67
10
A
TRP
11
-28.00
-60.30
11
A
TRP
8
-167.85
43.96
11
A
TRP
9
-51.88
106.04
11
A
TRP
11
-28.84
-60.78
11
A
ARG
12
-35.20
118.08
12
A
TRP
4
-178.43
66.11
12
A
LYS
5
-144.13
19.92
12
A
TRP
8
-177.06
76.38
12
A
TRP
11
-28.80
-59.99
12
A
ARG
12
-32.30
120.59
13
A
TRP
4
-126.75
-72.96
13
A
TRP
8
178.71
101.77
13
A
TRP
11
-29.36
-63.99
13
A
ARG
12
-51.78
107.99
14
A
LYS
5
-96.10
53.09
14
A
TRP
8
-174.13
99.71
14
A
TRP
9
-116.95
73.52
14
A
ARG
12
-125.49
-157.23
15
A
TRP
4
-178.79
-46.96
15
A
TRP
9
-49.25
105.13
15
A
PRO
10
-69.66
-158.83
16
A
TRP
4
-109.59
40.25
16
A
TRP
8
176.54
102.26
16
A
TRP
11
-28.73
-60.92
STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN BOUND TO SODIUM DODECYL SULFATE MICELLES
1
N
N
covale
1.304
both
A
ARG
13
A
C
ARG
13
1_555
A
NH2
14
A
N
NH2
14
1_555
ANTIMICROBIAL PROTEIN
poly-L-proline II helix, ANTIMICROBIAL PROTEIN
INDC_BOVIN
UNP
1
131
P33046
ILPWKWPWWPWRR
131
143
1G8C
1
13
P33046
A
1
1
13
BINDING SITE FOR RESIDUE NH2 A 14
A
NH2
14
Software
2
A
ARG
12
A
ARG
12
2
1_555
A
ARG
13
A
ARG
13
2
1_555
1
P 1