0.039526
0.000000
0.000000
0.000000
0.023981
0.000000
0.000000
0.000000
0.015152
0.00000
0.00000
0.00000
Tsunoda, M.
Karino, N.
Ueno, Y.
Matsuda, A.
Takenaka, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.300
41.700
66.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C10 H13 N2 O9 P
336.192
n
2'-DEOXY-5-FORMYLURIDINE 5'-(DIHYDROGEN PHOSPHATE)
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
345
348
10.1107/S0907444900017583
11173500
Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers?
2001
10.2210/pdb1g8v/pdb
pdb_00001g8v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
DIFFRACTOMETER
2000-01-23
WEISSENBERG
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL-6B
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
3677.376
5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'
2
syn
polymer
18.015
water
142
nat
water
no
yes
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(UFR)(DC)(DG)(DC)(DG)
CGCGAATUCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.28
45.94
VAPOR DIFFUSION, SITTING DROP
6.0
MPD, spermine, sodium chloride, potassium chloride, cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
MPD
1
spermine
1
NaCl
1
KCl
1
cacodylate
1
MPD
2
2.618
1
19
A
1
B
24
2.312
A_DC1:DG24_B
1
-2.535
0.236
-0.143
-0.102
2.362
1
19
A
2
B
23
-3.979
A_DG2:DC23_B
2
-9.964
-0.312
0.461
-0.233
-2.593
1
19
A
3
B
22
1.676
A_DC3:DG22_B
3
-6.910
0.125
0.100
-0.089
11.637
1
19
A
4
B
21
2.267
A_DG4:DC21_B
4
-10.980
-0.316
0.114
-0.135
10.452
1
20
A
5
B
20
3.666
A_DA5:UFR20_B
5
-16.205
-0.054
0.169
-0.122
1.750
1
20
A
6
B
19
3.247
A_DA6:DT19_B
6
-21.477
0.010
-0.003
-0.131
-0.860
1
20
A
7
B
18
5.359
A_DT7:DA18_B
7
-19.144
-0.017
0.168
-0.068
-6.219
1
20
A
8
B
17
5.740
A_UFR8:DA17_B
8
-14.140
-0.017
0.152
-0.078
-13.771
1
19
A
9
B
16
-1.121
A_DC9:DG16_B
9
-10.685
0.272
0.208
-0.081
7.208
1
19
A
10
B
15
3.928
A_DG10:DC15_B
10
-6.674
-0.235
0.453
-0.106
3.668
1
19
A
11
B
14
-1.188
A_DC11:DG14_B
11
-20.250
0.183
0.318
-0.116
11.769
1
19
A
12
B
13
0.892
A_DG12:DC13_B
12
-1.560
-0.341
0.300
-0.185
3.488
37.689
A
A
1
2
-6.608
B
B
24
23
3.388
-4.236
-0.947
-0.047
AA_DC1DG2:DC23DG24_BB
1
-7.148
11.150
36.794
0.512
0.480
3.560
39.258
A
A
2
3
-4.532
B
B
23
22
3.522
-3.036
0.714
0.126
AA_DG2DC3:DG22DC23_BB
2
4.460
-6.658
38.900
0.580
-0.484
3.132
29.382
A
A
3
4
20.111
B
B
22
21
3.087
10.003
-0.519
0.731
AA_DC3DG4:DC21DG22_BB
3
1.134
-2.280
27.639
-0.666
1.263
3.241
35.658
A
A
4
5
2.849
B
B
21
20
3.258
1.744
0.200
-0.261
AA_DG4DA5:UFR20DC21_BB
4
-0.063
0.103
35.616
-0.678
-0.335
3.423
37.492
A
A
5
6
-0.369
B
B
20
19
3.425
-0.237
-0.231
-0.396
AA_DA5DA6:DT19UFR20_BB
5
0.638
-0.993
37.486
-0.583
0.447
3.244
33.410
A
A
6
7
-4.261
B
B
19
18
3.215
-2.448
0.205
-0.590
AA_DA6DT7:DA18DT19_BB
6
-0.704
1.225
33.316
-0.626
-0.472
3.323
34.761
A
A
7
8
-1.255
B
B
18
17
3.313
-0.750
0.118
-0.459
AA_DT7UFR8:DA17DA18_BB
7
0.474
-0.793
34.750
-0.652
-0.123
3.386
42.024
A
A
8
9
-4.540
B
B
17
16
3.380
-3.252
-0.300
-0.305
AA_UFR8DC9:DG16DA17_BB
8
0.967
-1.350
41.893
-0.076
0.522
2.819
27.403
A
A
9
10
5.701
B
B
16
15
2.865
2.692
0.682
0.581
AA_DC9DG10:DC15DG16_BB
9
-2.950
6.249
27.116
0.646
-2.077
3.271
44.321
A
A
10
11
-12.469
B
B
15
14
3.409
-9.342
-1.417
0.533
AA_DG10DC11:DG14DC15_BB
10
-1.298
1.732
43.355
1.603
1.754
3.278
33.757
A
A
11
12
-1.974
B
B
14
13
3.237
-1.146
1.271
0.717
AA_DC11DG12:DC13DG14_BB
11
1.940
-3.343
33.684
1.420
-1.876
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-02-05
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
BD0043 contains the same DNA under different crystallization conditions.
BD0044 contains the same DNA under different crystallization conditions.
BD0045 contains the same DNA under different crystallization conditions.
RCSB
Y
RCSB
2000-11-21
REL
HOH
water
355D
PDB ENTRY 355D
PDB
experimental model
MTO
25
2
HOH
HOH
25
A
MTO
26
2
HOH
HOH
26
A
MTO
27
2
HOH
HOH
27
A
MTO
28
2
HOH
HOH
28
A
MTO
29
2
HOH
HOH
29
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
34
2
HOH
HOH
34
A
HOH
36
2
HOH
HOH
36
A
HOH
39
2
HOH
HOH
39
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
44
2
HOH
HOH
44
A
HOH
46
2
HOH
HOH
46
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
56
2
HOH
HOH
56
A
HOH
57
2
HOH
HOH
57
A
HOH
58
2
HOH
HOH
58
A
HOH
60
2
HOH
HOH
60
A
HOH
62
2
HOH
HOH
62
A
HOH
63
2
HOH
HOH
63
A
HOH
68
2
HOH
HOH
68
A
HOH
71
2
HOH
HOH
71
A
HOH
77
2
HOH
HOH
77
A
HOH
79
2
HOH
HOH
79
A
HOH
81
2
HOH
HOH
81
A
HOH
83
2
HOH
HOH
83
A
HOH
84
2
HOH
HOH
84
A
HOH
85
2
HOH
HOH
85
A
HOH
86
2
HOH
HOH
86
A
HOH
87
2
HOH
HOH
87
A
HOH
89
2
HOH
HOH
89
A
HOH
91
2
HOH
HOH
91
A
HOH
97
2
HOH
HOH
97
A
HOH
98
2
HOH
HOH
98
A
HOH
99
2
HOH
HOH
99
A
HOH
101
2
HOH
HOH
101
A
HOH
102
2
HOH
HOH
102
A
HOH
103
2
HOH
HOH
103
A
HOH
104
2
HOH
HOH
104
A
HOH
105
2
HOH
HOH
105
A
HOH
106
2
HOH
HOH
106
A
HOH
110
2
HOH
HOH
110
A
HOH
111
2
HOH
HOH
111
A
HOH
115
2
HOH
HOH
115
A
HOH
117
2
HOH
HOH
117
A
HOH
119
2
HOH
HOH
119
A
HOH
128
2
HOH
HOH
128
A
HOH
129
2
HOH
HOH
129
A
HOH
130
2
HOH
HOH
130
A
HOH
131
2
HOH
HOH
131
A
HOH
133
2
HOH
HOH
133
A
HOH
139
2
HOH
HOH
139
A
HOH
141
2
HOH
HOH
141
A
HOH
144
2
HOH
HOH
144
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
152
2
HOH
HOH
152
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
160
2
HOH
HOH
160
A
HOH
166
2
HOH
HOH
166
A
HOH
168
2
HOH
HOH
168
A
HOH
170
2
HOH
HOH
170
A
HOH
30
2
HOH
HOH
30
B
HOH
33
2
HOH
HOH
33
B
HOH
35
2
HOH
HOH
35
B
HOH
37
2
HOH
HOH
37
B
HOH
38
2
HOH
HOH
38
B
HOH
40
2
HOH
HOH
40
B
HOH
43
2
HOH
HOH
43
B
HOH
45
2
HOH
HOH
45
B
HOH
47
2
HOH
HOH
47
B
HOH
54
2
HOH
HOH
54
B
HOH
55
2
HOH
HOH
55
B
HOH
59
2
HOH
HOH
59
B
HOH
61
2
HOH
HOH
61
B
HOH
64
2
HOH
HOH
64
B
HOH
65
2
HOH
HOH
65
B
HOH
66
2
HOH
HOH
66
B
HOH
67
2
HOH
HOH
67
B
HOH
69
2
HOH
HOH
69
B
HOH
70
2
HOH
HOH
70
B
HOH
72
2
HOH
HOH
72
B
HOH
73
2
HOH
HOH
73
B
HOH
74
2
HOH
HOH
74
B
HOH
78
2
HOH
HOH
78
B
HOH
80
2
HOH
HOH
80
B
HOH
82
2
HOH
HOH
82
B
HOH
88
2
HOH
HOH
88
B
HOH
90
2
HOH
HOH
90
B
HOH
92
2
HOH
HOH
92
B
HOH
93
2
HOH
HOH
93
B
HOH
94
2
HOH
HOH
94
B
HOH
95
2
HOH
HOH
95
B
HOH
96
2
HOH
HOH
96
B
HOH
100
2
HOH
HOH
100
B
HOH
108
2
HOH
HOH
108
B
HOH
109
2
HOH
HOH
109
B
HOH
112
2
HOH
HOH
112
B
HOH
113
2
HOH
HOH
113
B
HOH
116
2
HOH
HOH
116
B
HOH
118
2
HOH
HOH
118
B
HOH
120
2
HOH
HOH
120
B
HOH
121
2
HOH
HOH
121
B
HOH
122
2
HOH
HOH
122
B
HOH
123
2
HOH
HOH
123
B
HOH
124
2
HOH
HOH
124
B
HOH
125
2
HOH
HOH
125
B
HOH
126
2
HOH
HOH
126
B
HOH
127
2
HOH
HOH
127
B
HOH
132
2
HOH
HOH
132
B
HOH
134
2
HOH
HOH
134
B
HOH
135
2
HOH
HOH
135
B
HOH
136
2
HOH
HOH
136
B
HOH
137
2
HOH
HOH
137
B
HOH
138
2
HOH
HOH
138
B
HOH
140
2
HOH
HOH
140
B
HOH
142
2
HOH
HOH
142
B
HOH
143
2
HOH
HOH
143
B
HOH
145
2
HOH
HOH
145
B
HOH
146
2
HOH
HOH
146
B
HOH
149
2
HOH
HOH
149
B
HOH
153
2
HOH
HOH
153
B
HOH
159
2
HOH
HOH
159
B
HOH
161
2
HOH
HOH
161
B
HOH
162
2
HOH
HOH
162
B
HOH
163
2
HOH
HOH
163
B
HOH
164
2
HOH
HOH
164
B
HOH
165
2
HOH
HOH
165
B
HOH
167
2
HOH
HOH
167
B
HOH
169
2
HOH
HOH
169
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
+U
8
n
8
UFR
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
+U
20
n
8
UFR
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
UFR
8
A
UFR
8
DU
B
UFR
20
B
UFR
8
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.239
0.208
1.80
50
727
6709
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 355D
0.26
0.22
5.00
0.25
0.18
1.80
50
137
631
10
484
0
0.004
0.9
20.3
1.10
0.349
0.035
0.284
1.91
101
1.8
50
1G8V
45728
6948
-3
0.028
1
6.58
99.3
0.243
1.80
1.86
97.3
phasing
AMoRE
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA
1
N
N
1
N
N
2
N
N
2
N
N
covale
1.607
both
A
DT
7
A
O3'
DT
7
1_555
A
UFR
8
A
P
UFR
8
1_555
covale
1.606
one
A
UFR
8
A
O3'
UFR
8
1_555
A
DC
9
A
P
DC
9
1_555
covale
1.604
both
B
DT
19
B
O3'
DT
7
1_555
B
UFR
20
B
P
UFR
8
1_555
covale
1.604
one
B
UFR
20
B
O3'
UFR
8
1_555
B
DC
21
B
P
DC
9
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
UFR
20
B
N3
UFR
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
UFR
20
B
O4
UFR
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
UFR
8
A
N3
UFR
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
UFR
8
A
O4
UFR
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
MODIFIED NUCLEOTIDE, FORMYLURIDINE, DNA DAMAGE, B-DNA, DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, DNA
1G8V
PDB
1
1G8V
1
12
1G8V
1
12
1G8V
A
1
1
12
13
24
1G8V
13
24
1G8V
B
1
1
12
19
P 21 21 21