0.008154
0.000000
0.000000
0.000000
0.008154
0.000000
0.000000
0.000000
0.011042
0.00000
0.00000
0.00000
Buts, L.
Hamelryck, T.W.
Dao-Thi, M.-H.
Loris, R.
Wyns, L.
Etzler, M.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
122.640
122.640
90.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
R
C
N
76
R
C
N
77
S
C
N
78
R
C
N
79
R
C
N
80
N
C
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
Y
153
N
C
Y
154
N
N
Y
155
N
C
Y
156
N
C
Y
157
N
N
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
S
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
S
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
MN
N
262
R
C
N
263
R
C
N
264
R
C
N
265
S
C
N
266
R
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
Y
151
N
sing
Y
152
N
doub
Y
153
N
doub
N
154
N
sing
Y
155
N
sing
N
156
N
sing
Y
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
309
193
201
10.1006/jmbi.2001.4639
11491289
Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus.
2001
US
Biochemistry
BICHAW
0033
0006-2960
36
15073
15080
10.1021/bi971828+
X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin
1997
US
Biochemistry
BICHAW
0033
0006-2960
34
4933
4942
X-ray crystal structure of the soybean agglutinin cross-linked with a biantennary analog of the blood group I carbohydrate antigen
1995
10.2210/pdb1g9f/pdb
pdb_00001g9f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
COLLIMATOR
AREA DETECTOR
1997-01-01
SIEMENS
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
27595.816
LECTIN
1
nat
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
910.823
beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]beta-D-galactopyranose
1
man
branched
54.938
MANGANESE (II) ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
9
nat
water
AGGLUTININ, SBA
no
no
AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYA
PDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK
VAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNID
PLDLTSFVLHEAI
AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYA
PDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK
VAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNID
PLDLTSFVLHEAI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
soybean
Glycine
sample
3847
SEED
Glycine max
1
3.08
60.10
VAPOR DIFFUSION, HANGING DROP
7.2
protein,carbohydrate,HEPES,CaCl(2),MnCl(2),NaCl, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2001-06-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
2
0
2020-07-29
2
1
2024-04-03
_software.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
256
n
B
NAG
1
A
NAG
258
n
B
NAG
2
S
GAL
5
n
C
GAL
1
S
NAG
3
n
C
NAG
2
S
GAL
4
n
C
GAL
3
S
NAG
1
n
C
NAG
4
S
GAL
2
n
C
GAL
5
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
isomeric ligand
isomeric ligand
isomeric ligand
RCSB
Y
RCSB
2000-11-23
REL
REL
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-3]DGalpb1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,5,4/[a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-1-2-1/a2-b1_a3-d1_b4-c1_d4-e1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-Galp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}[(3+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O2
NAG
GAL
2
1
3
O1
HO2
sing
C1
O4
GAL
NAG
3
2
3
O1
HO4
sing
C1
O3
NAG
GAL
4
1
3
O1
HO3
sing
C1
O4
GAL
NAG
5
4
3
O1
HO4
sing
n
n
n
n
n
n
n
MN
MANGANESE (II) ION
CA
CALCIUM ION
HOH
water
soybean agglutinin
Other
experimental model
MN
254
4
MN
MN
254
A
CA
255
5
CA
CA
255
A
WAT
1
6
HOH
HOH
264
A
WAT
2
6
HOH
HOH
265
A
WAT
3
6
HOH
HOH
266
A
WAT
4
6
HOH
HOH
267
A
WAT
5
6
HOH
HOH
268
A
WAT
6
6
HOH
HOH
269
A
WAT
7
6
HOH
HOH
270
A
WAT
8
6
HOH
HOH
271
A
WAT
9
6
HOH
HOH
272
A
ALA
1
n
1
ALA
1
A
GLU
2
n
2
GLU
2
A
THR
3
n
3
THR
3
A
VAL
4
n
4
VAL
4
A
SER
5
n
5
SER
5
A
PHE
6
n
6
PHE
6
A
SER
7
n
7
SER
7
A
TRP
8
n
8
TRP
8
A
ASN
9
n
9
ASN
9
A
LYS
10
n
10
LYS
10
A
PHE
11
n
11
PHE
11
A
VAL
12
n
12
VAL
12
A
PRO
13
n
13
PRO
13
A
LYS
14
n
14
LYS
14
A
GLN
15
n
15
GLN
15
A
PRO
16
n
16
PRO
16
A
ASN
17
n
17
ASN
17
A
MET
18
n
18
MET
18
A
ILE
19
n
19
ILE
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
GLY
22
n
22
GLY
22
A
ASP
23
n
23
ASP
23
A
ALA
24
n
24
ALA
24
A
ILE
25
n
25
ILE
25
A
VAL
26
n
26
VAL
26
A
THR
27
n
27
THR
27
A
SER
28
n
28
SER
28
A
SER
29
n
29
SER
29
A
GLY
30
n
30
GLY
30
A
LYS
31
n
31
LYS
31
A
LEU
32
n
32
LEU
32
A
GLN
33
n
33
GLN
33
A
LEU
34
n
34
LEU
34
A
ASN
35
n
35
ASN
35
A
LYS
36
n
36
LYS
36
A
VAL
37
n
37
VAL
37
A
ASP
38
n
38
ASP
38
A
n
39
39
A
n
40
40
A
n
41
41
A
THR
42
n
42
THR
42
A
PRO
43
n
43
PRO
43
A
LYS
44
n
44
LYS
44
A
PRO
45
n
45
PRO
45
A
SER
46
n
46
SER
46
A
SER
47
n
47
SER
47
A
LEU
48
n
48
LEU
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
LEU
52
n
52
LEU
52
A
TYR
53
n
53
TYR
53
A
SER
54
n
54
SER
54
A
THR
55
n
55
THR
55
A
PRO
56
n
56
PRO
56
A
ILE
57
n
57
ILE
57
A
HIS
58
n
58
HIS
58
A
ILE
59
n
59
ILE
59
A
TRP
60
n
60
TRP
60
A
ASP
61
n
61
ASP
61
A
LYS
62
n
62
LYS
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
GLY
65
n
65
GLY
65
A
SER
66
n
66
SER
66
A
VAL
67
n
67
VAL
67
A
ALA
68
n
68
ALA
68
A
SER
69
n
69
SER
69
A
PHE
70
n
70
PHE
70
A
ALA
71
n
71
ALA
71
A
ALA
72
n
72
ALA
72
A
SER
73
n
73
SER
73
A
PHE
74
n
74
PHE
74
A
ASN
75
n
75
ASN
75
A
PHE
76
n
76
PHE
76
A
THR
77
n
77
THR
77
A
PHE
78
n
78
PHE
78
A
TYR
79
n
79
TYR
79
A
ALA
80
n
80
ALA
80
A
PRO
81
n
81
PRO
81
A
ASP
82
n
82
ASP
82
A
THR
83
n
83
THR
83
A
LYS
84
n
84
LYS
84
A
ARG
85
n
85
ARG
85
A
LEU
86
n
86
LEU
86
A
ALA
87
n
87
ALA
87
A
ASP
88
n
88
ASP
88
A
GLY
89
n
89
GLY
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
PHE
92
n
92
PHE
92
A
PHE
93
n
93
PHE
93
A
LEU
94
n
94
LEU
94
A
ALA
95
n
95
ALA
95
A
PRO
96
n
96
PRO
96
A
ILE
97
n
97
ILE
97
A
ASP
98
n
98
ASP
98
A
THR
99
n
99
THR
99
A
LYS
100
n
100
LYS
100
A
PRO
101
n
101
PRO
101
A
GLN
102
n
102
GLN
102
A
THR
103
n
103
THR
103
A
HIS
104
n
104
HIS
104
A
ALA
105
n
105
ALA
105
A
GLY
106
n
106
GLY
106
A
TYR
107
n
107
TYR
107
A
LEU
108
n
108
LEU
108
A
GLY
109
n
109
GLY
109
A
LEU
110
n
110
LEU
110
A
PHE
111
n
111
PHE
111
A
ASN
112
n
112
ASN
112
A
GLU
113
n
113
GLU
113
A
ASN
114
n
114
ASN
114
A
GLU
115
n
115
GLU
115
A
SER
116
n
116
SER
116
A
GLY
117
n
117
GLY
117
A
ASP
118
n
118
ASP
118
A
GLN
119
n
119
GLN
119
A
VAL
120
n
120
VAL
120
A
VAL
121
n
121
VAL
121
A
ALA
122
n
122
ALA
122
A
VAL
123
n
123
VAL
123
A
GLU
124
n
124
GLU
124
A
PHE
125
n
125
PHE
125
A
ASP
126
n
126
ASP
126
A
THR
127
n
127
THR
127
A
PHE
128
n
128
PHE
128
A
ARG
129
n
129
ARG
129
A
ASN
130
n
130
ASN
130
A
SER
131
n
131
SER
131
A
TRP
132
n
132
TRP
132
A
ASP
133
n
133
ASP
133
A
PRO
134
n
134
PRO
134
A
PRO
135
n
135
PRO
135
A
ASN
136
n
136
ASN
136
A
PRO
137
n
137
PRO
137
A
HIS
138
n
138
HIS
138
A
ILE
139
n
139
ILE
139
A
GLY
140
n
140
GLY
140
A
ILE
141
n
141
ILE
141
A
ASN
142
n
142
ASN
142
A
VAL
143
n
143
VAL
143
A
ASN
144
n
144
ASN
144
A
SER
145
n
145
SER
145
A
ILE
146
n
146
ILE
146
A
ARG
147
n
147
ARG
147
A
SER
148
n
148
SER
148
A
ILE
149
n
149
ILE
149
A
LYS
150
n
150
LYS
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
SER
153
n
153
SER
153
A
TRP
154
n
154
TRP
154
A
ASP
155
n
155
ASP
155
A
LEU
156
n
156
LEU
156
A
ALA
157
n
157
ALA
157
A
ASN
158
n
158
ASN
158
A
ASN
159
n
159
ASN
159
A
LYS
160
n
160
LYS
160
A
VAL
161
n
161
VAL
161
A
ALA
162
n
162
ALA
162
A
LYS
163
n
163
LYS
163
A
VAL
164
n
164
VAL
164
A
LEU
165
n
165
LEU
165
A
ILE
166
n
166
ILE
166
A
THR
167
n
167
THR
167
A
TYR
168
n
168
TYR
168
A
ASP
169
n
169
ASP
169
A
ALA
170
n
170
ALA
170
A
SER
171
n
171
SER
171
A
THR
172
n
172
THR
172
A
SER
173
n
173
SER
173
A
LEU
174
n
174
LEU
174
A
LEU
175
n
175
LEU
175
A
VAL
176
n
176
VAL
176
A
ALA
177
n
177
ALA
177
A
SER
178
n
178
SER
178
A
LEU
179
n
179
LEU
179
A
VAL
180
n
180
VAL
180
A
TYR
181
n
181
TYR
181
A
PRO
182
n
182
PRO
182
A
SER
183
n
183
SER
183
A
GLN
184
n
184
GLN
184
A
ARG
185
n
185
ARG
185
A
THR
186
n
186
THR
186
A
SER
187
n
187
SER
187
A
ASN
188
n
188
ASN
188
A
ILE
189
n
189
ILE
189
A
LEU
190
n
190
LEU
190
A
SER
191
n
191
SER
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
VAL
194
n
194
VAL
194
A
ASP
195
n
195
ASP
195
A
LEU
196
n
196
LEU
196
A
LYS
197
n
197
LYS
197
A
THR
198
n
198
THR
198
A
SER
199
n
199
SER
199
A
LEU
200
n
200
LEU
200
A
PRO
201
n
201
PRO
201
A
GLU
202
n
202
GLU
202
A
TRP
203
n
203
TRP
203
A
VAL
204
n
204
VAL
204
A
ARG
205
n
205
ARG
205
A
ILE
206
n
206
ILE
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
SER
209
n
209
SER
209
A
ALA
210
n
210
ALA
210
A
ALA
211
n
211
ALA
211
A
THR
212
n
212
THR
212
A
GLY
213
n
213
GLY
213
A
LEU
214
n
214
LEU
214
A
ASP
215
n
215
ASP
215
A
ILE
216
n
216
ILE
216
A
PRO
217
n
217
PRO
217
A
GLY
218
n
218
GLY
218
A
GLU
219
n
219
GLU
219
A
SER
220
n
220
SER
220
A
HIS
221
n
221
HIS
221
A
ASP
222
n
222
ASP
222
A
VAL
223
n
223
VAL
223
A
LEU
224
n
224
LEU
224
A
SER
225
n
225
SER
225
A
TRP
226
n
226
TRP
226
A
SER
227
n
227
SER
227
A
PHE
228
n
228
PHE
228
A
ALA
229
n
229
ALA
229
A
SER
230
n
230
SER
230
A
ASN
231
n
231
ASN
231
A
LEU
232
n
232
LEU
232
A
PRO
233
n
233
PRO
233
A
HIS
234
n
234
HIS
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
241
241
A
LEU
242
n
242
LEU
242
A
ASP
243
n
243
ASP
243
A
LEU
244
n
244
LEU
244
A
THR
245
n
245
THR
245
A
SER
246
n
246
SER
246
A
PHE
247
n
247
PHE
247
A
VAL
248
n
248
VAL
248
A
LEU
249
n
249
LEU
249
A
HIS
250
n
250
HIS
250
A
GLU
251
n
251
GLU
251
A
n
252
252
A
n
253
253
A
author_defined_assembly
4
tetrameric
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
A
ASP
126
A
OD2
ASP
126
1_555
95.8
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
A
ASP
133
A
OD1
ASP
133
1_555
163.5
A
ASP
126
A
OD2
ASP
126
1_555
A
MN
254
D
MN
MN
1_555
A
ASP
133
A
OD1
ASP
133
1_555
100.3
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
A
HIS
138
A
NE2
HIS
138
1_555
78.0
A
ASP
126
A
OD2
ASP
126
1_555
A
MN
254
D
MN
MN
1_555
A
HIS
138
A
NE2
HIS
138
1_555
98.6
A
ASP
133
A
OD1
ASP
133
1_555
A
MN
254
D
MN
MN
1_555
A
HIS
138
A
NE2
HIS
138
1_555
102.4
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
264
F
O
HOH
1_555
91.5
A
ASP
126
A
OD2
ASP
126
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
264
F
O
HOH
1_555
85.6
A
ASP
133
A
OD1
ASP
133
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
264
F
O
HOH
1_555
86.8
A
HIS
138
A
NE2
HIS
138
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
264
F
O
HOH
1_555
169.0
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
80.5
A
ASP
126
A
OD2
ASP
126
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
173.3
A
ASP
133
A
OD1
ASP
133
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
83.1
A
HIS
138
A
NE2
HIS
138
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
86.2
A
HOH
264
F
O
HOH
1_555
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
88.9
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
ASP
126
A
OD2
ASP
126
1_555
55.1
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
PHE
128
A
O
PHE
128
1_555
70.6
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
PHE
128
A
O
PHE
128
1_555
116.7
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
ASN
130
A
OD1
ASN
130
1_555
140.5
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
ASN
130
A
OD1
ASN
130
1_555
164.0
A
PHE
128
A
O
PHE
128
1_555
A
CA
255
E
CA
CA
1_555
A
ASN
130
A
OD1
ASN
130
1_555
78.0
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
ASP
133
A
OD2
ASP
133
1_555
118.0
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
ASP
133
A
OD2
ASP
133
1_555
95.6
A
PHE
128
A
O
PHE
128
1_555
A
CA
255
E
CA
CA
1_555
A
ASP
133
A
OD2
ASP
133
1_555
82.1
A
ASN
130
A
OD1
ASN
130
1_555
A
CA
255
E
CA
CA
1_555
A
ASP
133
A
OD2
ASP
133
1_555
79.5
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
125.6
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
78.1
A
PHE
128
A
O
PHE
128
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
163.8
A
ASN
130
A
OD1
ASN
130
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
86.6
A
ASP
133
A
OD2
ASP
133
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
89.9
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
73.0
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
106.7
A
PHE
128
A
O
PHE
128
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
83.4
A
ASN
130
A
OD1
ASN
130
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
80.3
A
ASP
133
A
OD2
ASP
133
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
157.2
A
HOH
266
F
O
HOH
1_555
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
99.4
A
ASN
75
GLYCOSYLATION SITE
A
ASN
75
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_645
-y+1,x-1/2,z+1/4
crystal symmetry operation
122.6400000000
-61.3200000000
22.6400000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_556
x,-y+1/2,-z+5/4
crystal symmetry operation
0.0000000000
61.3200000000
113.2000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_666
-y+1,-x+1,-z+1
crystal symmetry operation
122.6400000000
122.6400000000
90.5600000000
A
N
TRP
8
A
N
TRP
8
A
O
TRP
226
A
O
TRP
226
A
N
ASN
231
A
N
ASN
231
A
O
SER
69
A
O
SER
69
A
O
PHE
76
A
O
PHE
76
A
N
ALA
162
A
N
ALA
162
A
N
ASP
169
A
N
ASP
169
A
O
LEU
174
A
O
LEU
174
A
N
TYR
181
A
N
TYR
181
A
O
THR
186
A
O
THR
186
A
O
THR
152
A
O
THR
152
A
N
ILE
139
A
N
ILE
139
A
N
ASN
142
A
N
ASN
142
A
O
ALA
122
A
O
ALA
122
A
N
PHE
125
A
N
PHE
125
A
O
LEU
90
A
O
LEU
90
A
O
ALA
95
A
O
ALA
95
A
N
ARG
205
A
N
ARG
205
A
N
ALA
210
A
N
ALA
210
A
O
GLY
49
A
O
GLY
49
A
O
LEU
52
A
O
LEU
52
A
N
ILE
19
A
N
ILE
19
A
O
THR
152
A
O
THR
152
A
N
ILE
139
A
N
ILE
139
A
N
ASN
142
A
N
ASN
142
A
O
ALA
122
A
O
ALA
122
A
N
PHE
125
A
N
PHE
125
A
O
LEU
90
A
O
LEU
90
A
O
ALA
95
A
O
ALA
95
A
N
ARG
205
A
N
ARG
205
A
O
VAL
204
A
O
VAL
204
A
N
ILE
57
A
N
ILE
57
1
A
CG
LYS
10
A
CG
LYS
10
1
Y
1
A
CE
LYS
10
A
CE
LYS
10
1
Y
1
A
NZ
LYS
10
A
NZ
LYS
10
1
Y
1
A
O
LYS
14
A
O
LYS
14
1
Y
1
A
CD
LYS
14
A
CD
LYS
14
1
Y
1
A
CE
LYS
14
A
CE
LYS
14
1
Y
1
A
NZ
LYS
14
A
NZ
LYS
14
1
Y
1
A
O
LYS
31
A
O
LYS
31
1
Y
1
A
CE
LYS
31
A
CE
LYS
31
1
Y
1
A
NZ
LYS
31
A
NZ
LYS
31
1
Y
1
A
CG
ASP
38
A
CG
ASP
38
1
Y
1
A
OD1
ASP
38
A
OD1
ASP
38
1
Y
1
A
OD2
ASP
38
A
OD2
ASP
38
1
Y
1
A
CG
LYS
44
A
CG
LYS
44
1
Y
1
A
CD
LYS
44
A
CD
LYS
44
1
Y
1
A
CE
LYS
44
A
CE
LYS
44
1
Y
1
A
NZ
LYS
44
A
NZ
LYS
44
1
Y
1
A
CG
LYS
62
A
CG
LYS
62
1
Y
1
A
CD
LYS
62
A
CD
LYS
62
1
Y
1
A
CE
LYS
62
A
CE
LYS
62
1
Y
1
A
NZ
LYS
62
A
NZ
LYS
62
1
Y
1
A
O
GLU
63
A
O
GLU
63
1
Y
1
A
CD
GLU
63
A
CD
GLU
63
1
Y
1
A
OE1
GLU
63
A
OE1
GLU
63
1
Y
1
A
OE2
GLU
63
A
OE2
GLU
63
1
Y
1
A
OG1
THR
64
A
OG1
THR
64
1
Y
1
A
CG2
THR
64
A
CG2
THR
64
1
Y
1
A
O
LYS
84
A
O
LYS
84
1
Y
1
A
CG
LYS
84
A
CG
LYS
84
1
Y
1
A
CD
LYS
84
A
CD
LYS
84
1
Y
1
A
CE
LYS
84
A
CE
LYS
84
1
Y
1
A
NZ
LYS
84
A
NZ
LYS
84
1
Y
1
A
O
ARG
85
A
O
ARG
85
1
Y
1
A
CG
ARG
85
A
CG
ARG
85
1
Y
1
A
CD
ARG
85
A
CD
ARG
85
1
Y
1
A
NE
ARG
85
A
NE
ARG
85
1
Y
1
A
CZ
ARG
85
A
CZ
ARG
85
1
Y
1
A
NH1
ARG
85
A
NH1
ARG
85
1
Y
1
A
NH2
ARG
85
A
NH2
ARG
85
1
Y
1
A
O
ARG
129
A
O
ARG
129
1
Y
1
A
NE
ARG
129
A
NE
ARG
129
1
Y
1
A
CZ
ARG
129
A
CZ
ARG
129
1
Y
1
A
NH1
ARG
129
A
NH1
ARG
129
1
Y
1
A
NH2
ARG
129
A
NH2
ARG
129
1
Y
1
A
O
LYS
197
A
O
LYS
197
1
Y
1
A
CE
LYS
197
A
CE
LYS
197
1
Y
1
A
NZ
LYS
197
A
NZ
LYS
197
1
Y
1
A
CB
LEU
242
A
CB
LEU
242
1
Y
1
A
CG
LEU
242
A
CG
LEU
242
1
Y
1
A
CD1
LEU
242
A
CD1
LEU
242
1
Y
1
A
CD2
LEU
242
A
CD2
LEU
242
1
Y
1
A
CB
ASP
243
A
CB
ASP
243
1
Y
1
A
CG
ASP
243
A
CG
ASP
243
1
Y
1
A
OD1
ASP
243
A
OD1
ASP
243
1
Y
1
A
OD2
ASP
243
A
OD2
ASP
243
1
Y
1
A
CB
LEU
244
A
CB
LEU
244
1
Y
1
A
CG
LEU
244
A
CG
LEU
244
1
Y
1
A
CD1
LEU
244
A
CD1
LEU
244
1
Y
1
A
CD2
LEU
244
A
CD2
LEU
244
1
Y
1
A
CB
THR
245
A
CB
THR
245
1
Y
1
A
OG1
THR
245
A
OG1
THR
245
1
Y
1
A
CG2
THR
245
A
CG2
THR
245
1
Y
1
A
CB
LEU
249
A
CB
LEU
249
1
Y
1
A
CG
LEU
249
A
CG
LEU
249
1
Y
1
A
CD1
LEU
249
A
CD1
LEU
249
1
Y
1
A
CD2
LEU
249
A
CD2
LEU
249
1
Y
1
A
CB
HIS
250
A
CB
HIS
250
1
Y
1
A
CG
HIS
250
A
CG
HIS
250
1
Y
1
A
ND1
HIS
250
A
ND1
HIS
250
1
Y
1
A
CD2
HIS
250
A
CD2
HIS
250
1
Y
1
A
CE1
HIS
250
A
CE1
HIS
250
1
Y
1
A
NE2
HIS
250
A
NE2
HIS
250
1
Y
1
A
CB
GLU
251
A
CB
GLU
251
1
Y
1
A
CG
GLU
251
A
CG
GLU
251
1
Y
1
A
CD
GLU
251
A
CD
GLU
251
1
Y
1
A
OE1
GLU
251
A
OE1
GLU
251
1
Y
1
A
OE2
GLU
251
A
OE2
GLU
251
1
Y
1
A
GLU
39
A
GLU
39
1
Y
1
A
ASN
40
A
ASN
40
1
Y
1
A
GLY
41
A
GLY
41
1
Y
1
A
ALA
235
A
ALA
235
1
Y
1
A
SER
236
A
SER
236
1
Y
1
A
SER
237
A
SER
237
1
Y
1
A
ASN
238
A
ASN
238
1
Y
1
A
ILE
239
A
ILE
239
1
Y
1
A
ASP
240
A
ASP
240
1
Y
1
A
PRO
241
A
PRO
241
1
Y
1
A
ALA
252
A
ALA
252
1
Y
1
A
ILE
253
A
ILE
253
1
Y
1
A
PRO
16
-68.09
2.39
1
A
GLU
63
-61.96
-84.44
1
A
THR
83
-62.16
4.18
1
A
ALA
87
176.88
141.29
1
A
GLN
102
-110.95
-148.30
1
A
ALA
105
53.82
-131.33
1
A
LEU
108
49.69
21.79
1
A
ASP
118
-72.86
-163.96
1
A
ASN
136
77.58
147.14
1
A
ASN
159
67.70
-4.00
1
A
ASP
243
-66.06
95.36
1
A
HIS
250
-99.63
-75.74
23.8
-0.86
0.00
0.00
-0.86
0.00
1.73
0.2300000
0.007
0.1900000
0.1900000
0.1900000
2.50
20.00
1125
10942
10942
10.3
89.4
RANDOM
1969940.24
0.00
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
soybean agglutinin
Engh & Huber
FLAT MODEL
43.72
0.302
0.31
0.23
5.00
0.41
0.32
2.50
20.00
9
1894
92
0
1793
0.007
1.4
25.5
0.80
2.26
1.50
3.35
2.00
3.82
2.00
5.07
2.50
1
CONSTR
1
X-RAY DIFFRACTION
0.3060000
0.026
0.2470000
2.66
143
0
1457
6
80.2
21.7
2.20
20.0
1G9F
72368
57894
0
5
0.1280000
1
12
2.9
80
2.20
2.25
3.7
1
model building
X-PLOR
refinement
CNS
1.0
data reduction
X-GEN
data scaling
X-GEN
phasing
X-PLOR
CRYSTAL STRUCTURE OF THE SOYBEAN AGGLUTININ IN A COMPLEX WITH A BIANTENNARY BLOOD GROUP ANTIGEN ANALOG
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
The biological assembly is a tetramer generated from the monomer
in the asymmetric unit by the operations:
- monomer B:
symmetry -X,-Y,Z
translation (245.28,0,0)
- monomer C:
symmetry -Y,-X,-Z
translation (122.64,122.64,90,56)
- monomer D:
symmetry Y,X,-Z
translation (122.64,122.64,90.56)
A
HIS
104
A
HIS
104
HELX_P
A
LEU
108
A
LEU
108
5
1
5
A
LEU
244
A
LEU
244
HELX_P
A
HIS
250
A
HIS
250
1
2
7
covale
1.452
one
N-Glycosylation
A
ASN
75
A
ND2
ASN
75
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.387
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.386
both
C
GAL
1
C
O2
GAL
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.386
both
C
GAL
1
C
O3
GAL
1_555
C
NAG
4
C
C1
NAG
1_555
covale
1.385
both
C
NAG
2
C
O4
NAG
1_555
C
GAL
3
C
C1
GAL
1_555
covale
1.386
both
C
NAG
4
C
O4
NAG
1_555
C
GAL
5
C
C1
GAL
1_555
metalc
2.246
A
GLU
124
A
OE2
GLU
124
1_555
A
MN
254
D
MN
MN
1_555
metalc
2.218
A
ASP
126
A
OD2
ASP
126
1_555
A
MN
254
D
MN
MN
1_555
metalc
2.475
A
ASP
126
A
OD1
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
metalc
2.257
A
ASP
126
A
OD2
ASP
126
1_555
A
CA
255
E
CA
CA
1_555
metalc
2.403
A
PHE
128
A
O
PHE
128
1_555
A
CA
255
E
CA
CA
1_555
metalc
2.346
A
ASN
130
A
OD1
ASN
130
1_555
A
CA
255
E
CA
CA
1_555
metalc
2.187
A
ASP
133
A
OD1
ASP
133
1_555
A
MN
254
D
MN
MN
1_555
metalc
2.301
A
ASP
133
A
OD2
ASP
133
1_555
A
CA
255
E
CA
CA
1_555
metalc
2.386
A
HIS
138
A
NE2
HIS
138
1_555
A
MN
254
D
MN
MN
1_555
metalc
2.075
A
MN
254
D
MN
MN
1_555
A
HOH
264
F
O
HOH
1_555
metalc
1.994
A
MN
254
D
MN
MN
1_555
A
HOH
265
F
O
HOH
1_555
metalc
2.337
A
CA
255
E
CA
CA
1_555
A
HOH
266
F
O
HOH
1_555
metalc
2.087
A
CA
255
E
CA
CA
1_555
A
HOH
267
F
O
HOH
1_555
SUGAR BINDING PROTEIN
JELLY-ROLL FOLD, LEGUME LECTIN, SUGAR BINDING PROTEIN
A
ALA
87
A
ALA
87
1
A
ASP
88
A
ASP
88
-0.85
LEC_SOYBN
UNP
1
33
P05046
AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYA
PDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK
VAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNID
PLDLTSFVLHEAI
33
285
1G9F
1
253
P05046
A
1
1
253
6
7
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
2
A
GLU
2
A
TRP
8
A
TRP
8
A
SER
220
A
SER
220
A
LEU
232
A
LEU
232
A
SER
69
A
SER
69
A
TYR
79
A
TYR
79
A
ALA
162
A
ALA
162
A
ASP
169
A
ASP
169
A
LEU
174
A
LEU
174
A
TYR
181
A
TYR
181
A
THR
186
A
THR
186
A
VAL
193
A
VAL
193
A
LYS
150
A
LYS
150
A
SER
153
A
SER
153
A
HIS
138
A
HIS
138
A
VAL
143
A
VAL
143
A
VAL
121
A
VAL
121
A
ASP
126
A
ASP
126
A
ASP
88
A
ASP
88
A
PRO
96
A
PRO
96
A
TRP
203
A
TRP
203
A
THR
212
A
THR
212
A
LEU
48
A
LEU
48
A
TYR
53
A
TYR
53
A
MET
18
A
MET
18
A
GLY
22
A
GLY
22
A
LYS
150
A
LYS
150
A
SER
153
A
SER
153
A
HIS
138
A
HIS
138
A
VAL
143
A
VAL
143
A
VAL
121
A
VAL
121
A
ASP
126
A
ASP
126
A
ASP
88
A
ASP
88
A
PRO
96
A
PRO
96
A
TRP
203
A
TRP
203
A
THR
212
A
THR
212
A
ILE
57
A
ILE
57
A
HIS
58
A
HIS
58
98
I 41 2 2