1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Malakauskas, S.M.
Mayo, S.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
470
475
10.1038/nsb0698-470
9628485
Design, structure and stability of a hyperthermophilic protein variant.
1998
10.2210/pdb1gb4/pdb
pdb_00001gb4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G
6367.060
GB1-C3B4
B1 DOMAIN
V1M, Y4F, V7I, T17I, T19I, T26E, V30I, V40I
1
man
polymer
no
no
MTTFKLIINGKTLKGEITIEAVDAAEAEKIFKQYANDNGIDGEWTYDDATKTFTVTE
MTTFKLIINGKTLKGEITIEAVDAAEAEKIFKQYANDNGIDGEWTYDDATKTFTVTE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptococcus
G148
Escherichia
Escherichia coli
sample
BL21
GB1C3B4
1324
Streptococcus sp.
GB1C3B4
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PET-11
PLASMID
PET-GB1C3B4
database_2
pdbx_database_status
struct_ref_seq_dif
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Database references
Other
1
0
1998-07-22
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1998-01-19
REL
REL
NO RESTRAINT VIOLATIONS GREATER THAN 0.3 ANGSTROMS
75
47
DQF-COSY NOESY TOCSY
50mM
5.0
ATMOSPHERIC
atm
308
K
distance geometry
H2O/D2O
BRUNGER
refinement
X-PLOR
3.1
structure solution
ANSIG
structure solution
VARIAN VNMR
VNMR
600
Varian
UNITYPLUS
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
THR
3
n
3
THR
3
A
PHE
4
n
4
PHE
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
ASN
9
n
9
ASN
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
GLY
15
n
15
GLY
15
A
GLU
16
n
16
GLU
16
A
ILE
17
n
17
ILE
17
A
THR
18
n
18
THR
18
A
ILE
19
n
19
ILE
19
A
GLU
20
n
20
GLU
20
A
ALA
21
n
21
ALA
21
A
VAL
22
n
22
VAL
22
A
ASP
23
n
23
ASP
23
A
ALA
24
n
24
ALA
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
GLU
28
n
28
GLU
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
PHE
31
n
31
PHE
31
A
LYS
32
n
32
LYS
32
A
GLN
33
n
33
GLN
33
A
TYR
34
n
34
TYR
34
A
ALA
35
n
35
ALA
35
A
ASN
36
n
36
ASN
36
A
ASP
37
n
37
ASP
37
A
ASN
38
n
38
ASN
38
A
GLY
39
n
39
GLY
39
A
ILE
40
n
40
ILE
40
A
ASP
41
n
41
ASP
41
A
GLY
42
n
42
GLY
42
A
GLU
43
n
43
GLU
43
A
TRP
44
n
44
TRP
44
A
THR
45
n
45
THR
45
A
TYR
46
n
46
TYR
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
ALA
49
n
49
ALA
49
A
THR
50
n
50
THR
50
A
LYS
51
n
51
LYS
51
A
THR
52
n
52
THR
52
A
PHE
53
n
53
PHE
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
THR
56
n
56
THR
56
A
GLU
57
n
57
GLU
57
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
31
A
A
O
HG1
ILE
THR
17
18
1.57
35
A
A
O
H
GLN
ASP
33
37
1.59
41
A
A
O
H
GLN
ASP
33
37
1.60
45
A
A
O
H
GLN
ASP
33
37
1.60
47
A
A
O
H
GLN
ASP
33
37
1.57
1
A
THR
2
-104.78
74.69
1
A
LEU
6
-164.25
107.59
1
A
ASN
9
-103.51
67.74
1
A
LEU
13
58.32
163.74
1
A
LYS
14
-177.24
88.93
2
A
THR
3
-61.16
95.17
2
A
LEU
6
-163.26
110.17
2
A
ASN
9
-102.93
63.64
2
A
LYS
11
-131.32
-40.84
2
A
LYS
14
-172.34
86.08
3
A
ASN
9
-104.95
67.06
3
A
LEU
13
60.33
127.82
4
A
THR
2
-112.17
69.30
4
A
LYS
5
-115.04
-168.35
4
A
LEU
6
-166.20
107.37
4
A
THR
12
-147.23
17.17
4
A
LEU
13
-170.81
36.61
4
A
LYS
14
-53.63
97.81
4
A
ILE
17
53.95
87.08
5
A
THR
2
-104.81
41.14
5
A
THR
3
-63.54
85.80
5
A
LEU
13
60.90
-76.69
5
A
LYS
14
54.99
99.91
5
A
THR
18
60.69
125.91
6
A
THR
2
-136.61
-71.07
6
A
THR
3
49.86
86.31
6
A
LEU
6
-164.43
112.65
6
A
THR
12
-93.34
-147.58
6
A
LYS
14
50.90
99.38
6
A
ILE
17
52.36
74.66
7
A
THR
2
-93.76
54.54
7
A
LEU
6
-163.69
99.97
7
A
THR
12
-82.63
-151.07
7
A
LYS
14
53.66
103.99
7
A
GLU
16
-108.77
54.73
8
A
THR
2
-106.40
42.93
8
A
THR
3
-66.94
85.21
8
A
LYS
14
-171.46
92.79
8
A
THR
18
46.32
98.18
9
A
THR
2
-85.07
-72.88
9
A
THR
3
50.10
72.23
9
A
LYS
14
-175.38
75.65
9
A
ILE
17
65.93
-60.46
9
A
THR
18
61.49
118.63
10
A
THR
3
-62.91
94.73
10
A
LEU
6
-163.13
97.92
10
A
LEU
13
-172.69
-67.29
10
A
LYS
14
53.16
97.81
10
A
GLU
16
-102.14
61.01
11
A
THR
2
-125.49
-74.42
11
A
THR
3
50.24
79.77
11
A
LEU
6
-163.08
105.68
11
A
THR
12
-66.25
-78.21
11
A
LYS
14
56.69
114.44
11
A
TRP
44
-164.10
112.33
12
A
THR
2
-115.17
55.21
12
A
ASN
9
-92.92
54.60
12
A
LYS
11
-150.43
50.59
12
A
THR
12
-138.72
-59.91
12
A
LYS
14
52.96
82.62
12
A
ILE
17
53.70
82.78
12
A
ASP
41
-167.31
106.42
13
A
LEU
6
-161.21
110.64
13
A
LYS
11
-171.19
50.74
13
A
THR
12
-140.20
23.80
13
A
LEU
13
-177.61
-30.66
13
A
LYS
14
55.68
110.19
13
A
GLU
16
-162.67
28.35
13
A
ASP
41
-152.16
71.63
13
A
PHE
53
-102.17
-169.33
14
A
THR
2
-104.26
40.57
14
A
LEU
6
-160.47
109.14
14
A
ASN
9
-101.49
53.47
14
A
LYS
11
-166.34
47.52
14
A
THR
12
-140.54
-45.70
14
A
LYS
14
52.84
89.60
14
A
ASP
41
-169.68
100.03
15
A
THR
3
-63.27
95.08
15
A
LEU
13
61.59
-75.43
15
A
LYS
14
55.40
97.71
15
A
ILE
17
52.94
86.05
16
A
THR
2
-104.23
-75.31
16
A
THR
3
50.17
78.01
16
A
LEU
6
-160.77
102.79
16
A
LYS
14
-33.74
137.25
16
A
GLU
16
-140.82
47.57
16
A
ASP
41
-162.33
101.97
17
A
LYS
5
-107.23
-168.01
17
A
LEU
6
-163.56
100.85
17
A
ASP
41
-168.12
98.16
18
A
LEU
6
-163.42
108.41
18
A
ASN
9
-96.65
50.77
18
A
LYS
11
-161.47
47.12
18
A
THR
12
-136.45
-62.31
18
A
LYS
14
51.99
81.85
18
A
ASP
41
-167.17
104.44
19
A
THR
2
-98.26
45.97
19
A
LEU
6
-162.21
112.35
19
A
LEU
13
59.36
159.10
20
A
LEU
6
-164.34
118.16
20
A
LEU
13
56.09
169.04
20
A
LYS
14
-179.64
90.80
20
A
ILE
17
53.65
85.41
21
A
THR
2
-104.56
54.25
21
A
LEU
6
-166.80
108.92
21
A
LYS
11
-133.20
-41.23
21
A
THR
12
-63.16
99.61
21
A
LEU
13
61.57
150.83
21
A
LYS
14
-162.69
105.91
21
A
GLU
16
-97.08
58.45
22
A
LYS
5
-115.90
-164.06
22
A
LEU
6
-168.12
108.51
22
A
LYS
11
-153.32
23.66
22
A
LEU
13
-172.32
32.16
22
A
LYS
14
-52.60
103.82
22
A
ILE
40
-102.41
74.61
22
A
ASP
41
-75.95
-164.43
22
A
THR
54
-160.96
117.76
23
A
ASN
9
-101.21
75.94
23
A
LEU
13
62.80
136.89
23
A
THR
18
45.53
96.40
24
A
THR
2
-103.13
-82.69
24
A
THR
3
50.24
90.64
24
A
LEU
13
41.00
27.05
24
A
GLU
16
-140.48
42.42
24
A
ASP
41
-167.61
97.63
25
A
LYS
5
-113.24
-167.53
25
A
LEU
6
-167.33
100.38
25
A
ASN
9
-80.75
-158.96
25
A
LYS
11
-148.07
25.54
25
A
LEU
13
67.43
-51.20
25
A
LYS
14
49.17
96.07
25
A
TRP
44
-162.85
118.78
26
A
THR
3
-60.12
92.02
26
A
LEU
6
-160.08
112.43
26
A
LEU
13
60.90
-76.78
26
A
LYS
14
54.72
98.95
27
A
LEU
6
-167.65
110.14
27
A
LEU
13
60.90
-77.30
27
A
LYS
14
54.37
92.81
27
A
ILE
17
53.60
72.75
28
A
THR
2
-141.37
-69.24
28
A
THR
3
51.03
88.05
28
A
LEU
6
-160.98
108.97
28
A
LEU
13
-121.96
-54.09
28
A
LYS
14
52.66
82.63
28
A
ILE
17
54.12
83.41
28
A
ASP
41
-172.18
94.34
28
A
TRP
44
-163.41
116.56
29
A
LYS
5
-105.88
-166.21
29
A
LEU
6
-166.55
105.69
29
A
LEU
13
59.71
-78.06
29
A
LYS
14
56.30
100.43
29
A
ASP
41
-169.90
104.49
30
A
LEU
6
-165.04
108.63
30
A
ASN
9
-98.88
40.96
30
A
LEU
13
62.25
144.09
30
A
ILE
17
53.25
95.25
31
A
THR
3
-68.86
85.31
31
A
LYS
11
-166.28
47.57
31
A
LYS
14
-46.97
109.00
31
A
ILE
17
67.05
-61.38
31
A
THR
18
62.37
112.63
32
A
THR
3
-67.16
91.31
32
A
LEU
6
-160.57
102.48
32
A
LYS
14
37.35
101.52
32
A
ASP
41
-168.10
106.61
32
A
TRP
44
-162.65
116.06
32
A
THR
56
-160.11
-169.44
33
A
THR
3
-62.75
86.89
33
A
LEU
6
-163.14
118.58
33
A
ASN
9
-102.64
56.76
33
A
LEU
13
60.28
156.33
33
A
LYS
14
-171.67
126.19
33
A
THR
18
45.33
97.23
33
A
ILE
40
-100.50
57.89
34
A
THR
3
-69.59
87.60
34
A
LEU
13
61.77
137.05
34
A
ILE
17
53.86
73.38
35
A
LYS
5
-112.55
-167.30
35
A
LEU
6
-166.44
108.60
35
A
ASN
9
-105.07
57.90
35
A
LYS
14
-176.42
80.37
36
A
ASN
9
-117.54
73.31
36
A
LYS
11
-149.97
-41.10
36
A
LYS
14
-175.32
75.15
36
A
THR
18
54.58
110.38
37
A
THR
3
-62.55
87.59
37
A
LEU
13
65.77
-53.62
37
A
LYS
14
43.79
95.68
37
A
THR
18
44.14
96.36
38
A
THR
3
-67.79
93.00
38
A
LEU
6
-165.32
104.86
38
A
ASN
9
-81.68
-159.04
38
A
THR
12
-58.02
94.98
38
A
LEU
13
58.17
171.03
38
A
LYS
14
-162.69
106.90
38
A
ILE
17
54.09
76.24
38
A
ASP
41
-171.19
100.26
38
A
TRP
44
-163.92
108.53
39
A
THR
12
-60.07
-164.64
39
A
LYS
14
52.33
101.22
39
A
THR
18
60.31
128.55
39
A
ASP
41
-169.74
106.05
40
A
ASN
9
-83.14
-157.97
40
A
LYS
11
-144.65
25.71
40
A
THR
12
-62.82
-71.77
40
A
LYS
14
54.28
100.67
40
A
ILE
17
65.52
-58.92
40
A
THR
18
57.50
107.53
40
A
ASP
41
-172.18
103.58
40
A
TRP
44
-161.24
115.22
40
A
THR
50
-140.81
16.85
41
A
THR
2
-82.74
-71.18
41
A
THR
3
49.69
76.84
41
A
THR
18
52.67
107.11
41
A
ASP
41
-176.65
-165.99
41
A
VAL
55
-164.35
96.40
42
A
LYS
11
-154.64
30.39
42
A
LEU
13
67.31
-52.45
42
A
LYS
14
48.83
91.28
42
A
THR
18
47.01
102.20
43
A
THR
12
-140.07
27.32
43
A
LEU
13
-173.73
-74.55
43
A
GLU
16
-111.99
64.87
43
A
PHE
53
-62.30
-177.04
44
A
LEU
13
58.48
162.68
44
A
LYS
14
-175.69
94.29
44
A
THR
18
61.83
129.59
45
A
THR
3
-69.68
91.93
45
A
LEU
6
-164.05
98.77
45
A
LEU
13
38.74
28.57
45
A
ILE
17
36.98
83.92
46
A
THR
2
-110.57
-80.85
46
A
THR
3
52.39
97.46
46
A
ASN
9
-108.84
52.29
46
A
LYS
14
-174.04
76.21
46
A
GLU
16
-67.06
-154.34
46
A
ILE
17
-175.07
-32.25
46
A
THR
18
63.49
137.00
46
A
GLU
20
-116.41
78.52
46
A
ASP
41
-170.07
101.97
47
A
LEU
6
-165.25
107.70
47
A
LEU
13
61.09
148.97
47
A
THR
18
56.79
112.54
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G, NMR, 47 STRUCTURES
1
Y
N
A
ASP
23
A
ASP
23
HELX_P
A
ASN
38
A
ASN
38
1
1
16
HYPERTHERMOPHILE
HYPERTHERMOPHILE, STREPTOCOCCAL PROTEIN G
SPG2_STRSG
UNP
1
1
P19909
MEKEKKVKYFLRKSAFGLASVSAAFLVGSTVFAVDSPIEDTPIIRNGGELTNLLGNSETTLALRNEESATADLTAAAVAD
TVAAAAAENAGAAAWEAAAAADALAKAKADALKEFNKYGVSDYYKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGL
SDFLKSQTPAEDTVKSIELAEAKVLANRELDKYGVSDYHKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLSDFLK
SQTPAEDTVKSIELAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALPKTDTYKLILNGKTLKGETTTE
AVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEKPEVIDASELTPAVTTYKLVINGKTLKGETTTEAVDAATAEKV
FKQYANDNGVDGEWTYDDATKTFTVTEKPEVIDASELTPAVTTYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGV
DGVWTYDDATKTFTVTEMVTEVPGDAPTEPEKPEASIPLVPLTPATPIAKDDAKKDDTKKEDAKKPEAKKEDAKKAETLP
TTGEGSNPFFTAAALAVMAGAGALAVASKRKED
372
427
1GB4
2
57
P19909
A
1
2
57
1
TYR
engineered mutation
PHE
4
1GB4
A
P19909
UNP
374
4
1
VAL
engineered mutation
ILE
7
1GB4
A
P19909
UNP
377
7
1
THR
engineered mutation
ILE
17
1GB4
A
P19909
UNP
387
17
1
THR
engineered mutation
ILE
19
1GB4
A
P19909
UNP
389
19
1
THR
engineered mutation
GLU
26
1GB4
A
P19909
UNP
396
26
1
VAL
engineered mutation
ILE
30
1GB4
A
P19909
UNP
400
30
1
VAL
engineered mutation
ILE
40
1GB4
A
P19909
UNP
410
40
4
anti-parallel
parallel
anti-parallel
A
LEU
13
A
LEU
13
A
ALA
21
A
ALA
21
A
MET
1
A
MET
1
A
GLY
10
A
GLY
10
A
LYS
51
A
LYS
51
A
GLU
57
A
GLU
57
A
GLU
43
A
GLU
43
A
ASP
48
A
ASP
48
1
P 1