0.015115
0.008727
0.000000
0.000000
0.017453
0.000000
0.000000
0.000000
0.012463
0.00000
0.00000
0.00000
Mace, J.E.
Agard, D.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
66.160
66.160
80.240
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H14 B N O2
130.981
n
LEUCINE BORONIC ACID
peptide-like
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H8 O4
132.115
SUCCINIC ACID MONOMETHYL ESTER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
254
720
736
10.1006/jmbi.1995.0650
7500345
Kinetic and structural characterization of mutations of glycine 216 in alpha-lytic protease: a new target for engineering substrate specificity.
1995
US
Biochemistry
BICHAW
0033
0006-2960
30
10388
Structural Basis for Broad Specificity in Alpha-Lytic Protease
1991
UK
Nature
NATUAS
0006
0028-0836
339
191
Structural Plasticity Broadens the Specificity of an Engineered Protease
1989
US
Biochemistry
BICHAW
0033
0006-2960
28
7600
Structural Analysis of Specificity: Alpha-Lytic Protease Complexes with Analogues of Reaction Intermediates
1989
US
Biochemistry
BICHAW
0033
0006-2960
27
7609
Serine Protease Mechanism: Structure of an Inhibitory Complex of Alpha-Lytic Protease and a Tightly Bound Peptide Boronic Acid
1987
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
184
479
Refined Structure of Alpha-Lytic Protease at 1.7 Angstroms Resolution. Analysis of Hydrogen Bonding and Solvent Structure
1985
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
131
743
Molecular Structure of the Alpha-Lytic Protease from Myxobacter 495 at 2.8 Angstroms Resolution
1979
10.2210/pdb1gbc/pdb
pdb_00001gbc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1994-09-22
RIGAKU
M
x-ray
1
1.5418
1.0
1.5418
19829.041
ALPHA-LYTIC PROTEASE
3.4.21.12
M190A, G216A
1
man
polymer
484.351
METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR
1
syn
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
159
nat
water
no
no
ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVA
NGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACAGRGDSGGSWITSAGQAQGVMSG
ANVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG
ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVA
NGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACAGRGDSGGSWITSAGQAQGVMSG
ANVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG
A
polypeptide(L)
no
yes
(MSU)AAP(BLE)
XAAPL
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lysobacter
495
Escherichia
sample
29487
ALPHA-LYTIC PROTEASE PREPROENZ
69
Lysobacter enzymogenes
ALPHA-LYTIC PROTEASE PREPROENZYME
562
Escherichia coli
PALP12 (PBR322-DERIVATIVE)
2.49
50.70
database_2
pdbx_database_status
struct_conn
struct_ref_seq
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
Database references
Derived calculations
Other
1
0
1996-01-29
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-12-12
1
4
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-09-06
REL
REL
SO4
SULFATE ION
HOH
water
INHIBITORY PEPTIDE BORONIC ACIDS ARE PEPTIDE ANALOGS IN WHICH THE C-TERMINAL CARBOXYL GROUP HAS BEEN REPLACED WITH THE BORONIC ACID GROUP (B(OH)2).
INHIBITORY PEPTIDE BORONIC ACIDS ARE PEPTIDE ANALOGS IN
WHICH THE C-TERMINAL CARBOXYL GROUP HAS BEEN REPLACED
WITH THE BORONIC ACID GROUP (B(OH)2).
INHIBITOR NUMBERING IS BY ANALOGY TO PROTEASE SUBSTRATE
NOMENCLATURE IN WHICH THE RESIDUE PRIOR TO THE SCISSILE
BOND IS THE P1 RESIDUE, THE NEXT TOWARD THE N-TERMINUS
IS THE P2 RESIDUE, ETC.
CHAIN A RESIDUE NUMBERING IS DONE BY HOMOLOGY WITH CHYMOTRYPSIN FOR RESIDUES 15A - 245. CHAIN P INHIBITOR NUMBERING IS DONE BY ANALOGY TO PROTEASE SUBSTRATE NOMENCLATURE IN WHICH THE RESIDUE PRIOR TO THE SCISSILE BOND IS THE P1 RESIDUE, THE NEXT TOWARD THE N-TERMINUS IS THE P2 RESIDUE, ETC.
Inhibitor
N-(4-methoxy-4-oxobutanoyl)-L-alanyl-L-alanyl-N-[(1R)-1-(dihydroxyboranyl)-3-methylbutyl]-L-prolinamide
Peptide-like
SO4
1
3
SO4
SO4
1
A
SO4
2
3
SO4
SO4
2
A
HOH
3
4
HOH
HOH
246
A
HOH
4
4
HOH
HOH
247
A
HOH
5
4
HOH
HOH
248
A
HOH
6
4
HOH
HOH
249
A
HOH
7
4
HOH
HOH
250
A
HOH
8
4
HOH
HOH
251
A
HOH
9
4
HOH
HOH
252
A
HOH
10
4
HOH
HOH
253
A
HOH
11
4
HOH
HOH
254
A
HOH
12
4
HOH
HOH
255
A
HOH
13
4
HOH
HOH
256
A
HOH
14
4
HOH
HOH
257
A
HOH
15
4
HOH
HOH
258
A
HOH
16
4
HOH
HOH
259
A
HOH
17
4
HOH
HOH
260
A
HOH
18
4
HOH
HOH
261
A
HOH
19
4
HOH
HOH
262
A
HOH
20
4
HOH
HOH
263
A
HOH
21
4
HOH
HOH
264
A
HOH
22
4
HOH
HOH
265
A
HOH
23
4
HOH
HOH
266
A
HOH
24
4
HOH
HOH
267
A
HOH
25
4
HOH
HOH
268
A
HOH
26
4
HOH
HOH
269
A
HOH
27
4
HOH
HOH
270
A
HOH
28
4
HOH
HOH
271
A
HOH
29
4
HOH
HOH
272
A
HOH
30
4
HOH
HOH
273
A
HOH
31
4
HOH
HOH
274
A
HOH
32
4
HOH
HOH
275
A
HOH
33
4
HOH
HOH
276
A
HOH
34
4
HOH
HOH
277
A
HOH
35
4
HOH
HOH
278
A
HOH
36
4
HOH
HOH
279
A
HOH
37
4
HOH
HOH
280
A
HOH
38
4
HOH
HOH
281
A
HOH
39
4
HOH
HOH
282
A
HOH
40
4
HOH
HOH
283
A
HOH
41
4
HOH
HOH
284
A
HOH
42
4
HOH
HOH
285
A
HOH
43
4
HOH
HOH
286
A
HOH
44
4
HOH
HOH
287
A
HOH
45
4
HOH
HOH
288
A
HOH
46
4
HOH
HOH
289
A
HOH
47
4
HOH
HOH
290
A
HOH
48
4
HOH
HOH
291
A
HOH
49
4
HOH
HOH
292
A
HOH
50
4
HOH
HOH
293
A
HOH
51
4
HOH
HOH
294
A
HOH
52
4
HOH
HOH
295
A
HOH
53
4
HOH
HOH
296
A
HOH
54
4
HOH
HOH
297
A
HOH
55
4
HOH
HOH
298
A
HOH
56
4
HOH
HOH
299
A
HOH
57
4
HOH
HOH
300
A
HOH
58
4
HOH
HOH
301
A
HOH
59
4
HOH
HOH
302
A
HOH
60
4
HOH
HOH
303
A
HOH
61
4
HOH
HOH
304
A
HOH
62
4
HOH
HOH
305
A
HOH
63
4
HOH
HOH
306
A
HOH
64
4
HOH
HOH
307
A
HOH
65
4
HOH
HOH
308
A
HOH
66
4
HOH
HOH
309
A
HOH
67
4
HOH
HOH
310
A
HOH
68
4
HOH
HOH
311
A
HOH
69
4
HOH
HOH
312
A
HOH
70
4
HOH
HOH
313
A
HOH
71
4
HOH
HOH
314
A
HOH
72
4
HOH
HOH
315
A
HOH
73
4
HOH
HOH
316
A
HOH
74
4
HOH
HOH
317
A
HOH
75
4
HOH
HOH
318
A
HOH
76
4
HOH
HOH
319
A
HOH
77
4
HOH
HOH
320
A
HOH
78
4
HOH
HOH
321
A
HOH
79
4
HOH
HOH
322
A
HOH
80
4
HOH
HOH
323
A
HOH
81
4
HOH
HOH
324
A
HOH
82
4
HOH
HOH
325
A
HOH
83
4
HOH
HOH
326
A
HOH
84
4
HOH
HOH
327
A
HOH
85
4
HOH
HOH
328
A
HOH
86
4
HOH
HOH
329
A
HOH
87
4
HOH
HOH
330
A
HOH
88
4
HOH
HOH
331
A
HOH
89
4
HOH
HOH
332
A
HOH
90
4
HOH
HOH
333
A
HOH
91
4
HOH
HOH
334
A
HOH
92
4
HOH
HOH
335
A
HOH
93
4
HOH
HOH
336
A
HOH
94
4
HOH
HOH
337
A
HOH
95
4
HOH
HOH
338
A
HOH
96
4
HOH
HOH
339
A
HOH
97
4
HOH
HOH
340
A
HOH
98
4
HOH
HOH
341
A
HOH
99
4
HOH
HOH
342
A
HOH
100
4
HOH
HOH
343
A
HOH
101
4
HOH
HOH
344
A
HOH
102
4
HOH
HOH
345
A
HOH
103
4
HOH
HOH
346
A
HOH
104
4
HOH
HOH
347
A
HOH
105
4
HOH
HOH
348
A
HOH
106
4
HOH
HOH
349
A
HOH
107
4
HOH
HOH
350
A
HOH
108
4
HOH
HOH
351
A
HOH
109
4
HOH
HOH
352
A
HOH
110
4
HOH
HOH
353
A
HOH
111
4
HOH
HOH
354
A
HOH
112
4
HOH
HOH
355
A
HOH
113
4
HOH
HOH
356
A
HOH
114
4
HOH
HOH
357
A
HOH
115
4
HOH
HOH
358
A
HOH
116
4
HOH
HOH
359
A
HOH
117
4
HOH
HOH
360
A
HOH
118
4
HOH
HOH
361
A
HOH
119
4
HOH
HOH
362
A
HOH
120
4
HOH
HOH
363
A
HOH
121
4
HOH
HOH
364
A
HOH
122
4
HOH
HOH
365
A
HOH
123
4
HOH
HOH
366
A
HOH
124
4
HOH
HOH
367
A
HOH
125
4
HOH
HOH
368
A
HOH
126
4
HOH
HOH
369
A
HOH
127
4
HOH
HOH
370
A
HOH
128
4
HOH
HOH
371
A
HOH
129
4
HOH
HOH
372
A
HOH
130
4
HOH
HOH
373
A
HOH
131
4
HOH
HOH
374
A
HOH
132
4
HOH
HOH
375
A
HOH
133
4
HOH
HOH
376
A
HOH
134
4
HOH
HOH
377
A
HOH
135
4
HOH
HOH
378
A
HOH
136
4
HOH
HOH
379
A
HOH
137
4
HOH
HOH
380
A
HOH
138
4
HOH
HOH
381
A
HOH
139
4
HOH
HOH
382
A
HOH
140
4
HOH
HOH
383
A
HOH
143
4
HOH
HOH
384
A
HOH
144
4
HOH
HOH
385
A
HOH
147
4
HOH
HOH
386
A
HOH
148
4
HOH
HOH
387
A
HOH
149
4
HOH
HOH
388
A
HOH
150
4
HOH
HOH
389
A
HOH
151
4
HOH
HOH
390
A
HOH
152
4
HOH
HOH
391
A
HOH
154
4
HOH
HOH
392
A
HOH
155
4
HOH
HOH
393
A
HOH
156
4
HOH
HOH
394
A
HOH
157
4
HOH
HOH
395
A
HOH
141
4
HOH
HOH
141
P
HOH
142
4
HOH
HOH
142
P
HOH
145
4
HOH
HOH
145
P
HOH
146
4
HOH
HOH
146
P
HOH
153
4
HOH
HOH
153
P
HOH
158
4
HOH
HOH
158
P
HOH
159
4
HOH
HOH
159
P
HOH
160
4
HOH
HOH
160
P
HOH
161
4
HOH
HOH
161
P
ALA
15
n
1
A
ALA
15
A
ASN
15
n
2
B
ASN
15
A
ILE
16
n
3
ILE
16
A
VAL
17
n
4
VAL
17
A
GLY
18
n
5
GLY
18
A
GLY
19
n
6
GLY
19
A
ILE
31
n
7
ILE
31
A
GLU
32
n
8
GLU
32
A
TYR
33
n
9
TYR
33
A
SER
34
n
10
SER
34
A
ILE
35
n
11
ILE
35
A
ASN
36
n
12
ASN
36
A
ASN
38
n
13
ASN
38
A
ALA
39
n
14
ALA
39
A
SER
40
n
15
SER
40
A
LEU
41
n
16
LEU
41
A
CYS
42
n
17
CYS
42
A
SER
43
n
18
SER
43
A
VAL
44
n
19
VAL
44
A
GLY
44
n
20
A
GLY
44
A
PHE
45
n
21
PHE
45
A
SER
46
n
22
SER
46
A
VAL
47
n
23
VAL
47
A
THR
48
n
24
THR
48
A
ARG
48
n
25
A
ARG
48
A
GLY
48
n
26
B
GLY
48
A
ALA
48
n
27
C
ALA
48
A
THR
49
n
28
THR
49
A
LYS
50
n
29
LYS
50
A
GLY
51
n
30
GLY
51
A
PHE
52
n
31
PHE
52
A
VAL
53
n
32
VAL
53
A
THR
54
n
33
THR
54
A
ALA
55
n
34
ALA
55
A
GLY
56
n
35
GLY
56
A
HIS
57
n
36
HIS
57
A
CYS
58
n
37
CYS
58
A
GLY
59
n
38
GLY
59
A
THR
59
n
39
A
THR
59
A
VAL
59
n
40
B
VAL
59
A
ASN
60
n
41
ASN
60
A
ALA
61
n
42
ALA
61
A
THR
62
n
43
THR
62
A
ALA
64
n
44
ALA
64
A
ARG
65
n
45
ARG
65
A
ILE
66
n
46
ILE
66
A
GLY
67
n
47
GLY
67
A
GLY
81
n
48
GLY
81
A
ALA
82
n
49
ALA
82
A
VAL
83
n
50
VAL
83
A
VAL
84
n
51
VAL
84
A
GLY
85
n
52
GLY
85
A
THR
87
n
53
THR
87
A
PHE
88
n
54
PHE
88
A
ALA
88
n
55
A
ALA
88
A
ALA
89
n
56
ALA
89
A
ARG
90
n
57
ARG
90
A
VAL
91
n
58
VAL
91
A
PHE
94
n
59
PHE
94
A
PRO
95
n
60
PRO
95
A
GLY
100
n
61
GLY
100
A
ASN
101
n
62
ASN
101
A
ASP
102
n
63
ASP
102
A
ARG
103
n
64
ARG
103
A
ALA
104
n
65
ALA
104
A
TRP
105
n
66
TRP
105
A
VAL
106
n
67
VAL
106
A
SER
107
n
68
SER
107
A
LEU
108
n
69
LEU
108
A
THR
109
n
70
THR
109
A
SER
110
n
71
SER
110
A
ALA
111
n
72
ALA
111
A
GLN
112
n
73
GLN
112
A
THR
113
n
74
THR
113
A
LEU
114
n
75
LEU
114
A
LEU
119
n
76
LEU
119
A
PRO
120
n
77
PRO
120
A
ARG
120
n
78
A
ARG
120
A
VAL
120
n
79
B
VAL
120
A
ALA
120
n
80
C
ALA
120
A
ASN
120
n
81
D
ASN
120
A
GLY
120
n
82
E
GLY
120
A
SER
120
n
83
G
SER
120
A
SER
120
n
84
H
SER
120
A
PHE
120
n
85
I
PHE
120
A
VAL
120
n
86
J
VAL
120
A
THR
120
n
87
K
THR
120
A
VAL
121
n
88
VAL
121
A
ARG
122
n
89
ARG
122
A
GLY
123
n
90
GLY
123
A
SER
124
n
91
SER
124
A
THR
125
n
92
THR
125
A
GLU
129
n
93
GLU
129
A
ALA
130
n
94
ALA
130
A
ALA
131
n
95
ALA
131
A
VAL
132
n
96
VAL
132
A
GLY
133
n
97
GLY
133
A
ALA
134
n
98
ALA
134
A
ALA
135
n
99
ALA
135
A
VAL
136
n
100
VAL
136
A
CYS
137
n
101
CYS
137
A
ARG
138
n
102
ARG
138
A
SER
139
n
103
SER
139
A
GLY
140
n
104
GLY
140
A
ARG
141
n
105
ARG
141
A
THR
142
n
106
THR
142
A
THR
143
n
107
THR
143
A
GLY
156
n
108
GLY
156
A
TYR
157
n
109
TYR
157
A
GLN
158
n
110
GLN
158
A
CYS
159
n
111
CYS
159
A
GLY
160
n
112
GLY
160
A
THR
161
n
113
THR
161
A
ILE
162
n
114
ILE
162
A
THR
163
n
115
THR
163
A
ALA
164
n
116
ALA
164
A
LYS
165
n
117
LYS
165
A
ASN
166
n
118
ASN
166
A
VAL
167
n
119
VAL
167
A
THR
168
n
120
THR
168
A
ALA
169
n
121
ALA
169
A
ASN
170
n
122
ASN
170
A
TYR
171
n
123
TYR
171
A
ALA
173
n
124
ALA
173
A
GLU
174
n
125
GLU
174
A
GLY
175
n
126
GLY
175
A
ALA
176
n
127
ALA
176
A
VAL
177
n
128
VAL
177
A
ARG
178
n
129
ARG
178
A
GLY
179
n
130
GLY
179
A
LEU
180
n
131
LEU
180
A
THR
181
n
132
THR
181
A
GLN
182
n
133
GLN
182
A
GLY
183
n
134
GLY
183
A
ASN
184
n
135
ASN
184
A
ALA
185
n
136
ALA
185
A
CYS
189
n
137
CYS
189
A
ALA
190
n
138
ALA
190
A
GLY
191
n
139
GLY
191
A
ARG
192
n
140
ARG
192
A
GLY
193
n
141
GLY
193
A
ASP
194
n
142
ASP
194
A
SER
195
n
143
SER
195
A
GLY
196
n
144
GLY
196
A
GLY
197
n
145
GLY
197
A
SER
198
n
146
SER
198
A
TRP
199
n
147
TRP
199
A
ILE
200
n
148
ILE
200
A
THR
201
n
149
THR
201
A
SER
201
n
150
A
SER
201
A
ALA
202
n
151
ALA
202
A
GLY
207
n
152
GLY
207
A
GLN
208
n
153
GLN
208
A
ALA
209
n
154
ALA
209
A
GLN
210
n
155
GLN
210
A
GLY
211
n
156
GLY
211
A
VAL
212
n
157
VAL
212
A
MET
213
n
158
MET
213
A
SER
214
n
159
SER
214
A
GLY
215
n
160
GLY
215
A
ALA
216
n
161
ALA
216
A
ASN
217
n
162
ASN
217
A
VAL
218
n
163
VAL
218
A
GLN
219
n
164
GLN
219
A
SER
219
n
165
A
SER
219
A
ASN
219
n
166
B
ASN
219
A
GLY
219
n
167
C
GLY
219
A
ASN
219
n
168
D
ASN
219
A
ASN
220
n
169
ASN
220
A
CYS
220
n
170
A
CYS
220
A
GLY
221
n
171
GLY
221
A
ILE
222
n
172
ILE
222
A
PRO
222
n
173
A
PRO
222
A
ALA
222
n
174
B
ALA
222
A
SER
222
n
175
C
SER
222
A
GLN
223
n
176
GLN
223
A
ARG
224
n
177
ARG
224
A
SER
225
n
178
SER
225
A
SER
226
n
179
SER
226
A
LEU
227
n
180
LEU
227
A
PHE
228
n
181
PHE
228
A
GLU
229
n
182
GLU
229
A
ARG
230
n
183
ARG
230
A
LEU
231
n
184
LEU
231
A
GLN
232
n
185
GLN
232
A
PRO
233
n
186
PRO
233
A
ILE
234
n
187
ILE
234
A
LEU
235
n
188
LEU
235
A
SER
236
n
189
SER
236
A
GLN
237
n
190
GLN
237
A
TYR
238
n
191
TYR
238
A
GLY
239
n
192
GLY
239
A
LEU
240
n
193
LEU
240
A
SER
241
n
194
SER
241
A
LEU
242
n
195
LEU
242
A
VAL
243
n
196
VAL
243
A
THR
244
n
197
THR
244
A
GLY
245
n
198
GLY
245
A
n
1
5
P
ALA
4
n
2
ALA
4
P
ALA
3
n
3
ALA
3
P
PRO
2
n
4
PRO
2
P
BLE
1
n
5
BLE
1
P
author_and_software_defined_assembly
PISA
2
dimeric
1150
-24
7810
P
BLE
1
LEUCINE BORONIC ACID
B
BLE
5
LEU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
33
A
O
TYR
9
A
N
CYS
42
A
N
CYS
17
A
O
PHE
45
A
O
PHE
21
A
N
VAL
53
A
N
VAL
32
A
O
PHE
52
A
O
PHE
31
A
N
VAL
106
A
N
VAL
67
A
O
ARG
103
A
O
ARG
64
A
N
VAL
91
A
N
VAL
58
A
O
ALA
82
A
O
ALA
49
A
N
ILE
66
A
N
ILE
46
B
A
O
VAL
120
A
O
VAL
79
J
A
N
VAL
120
A
N
VAL
86
A
O
GLY
156
A
O
GLY
108
A
N
GLY
140
A
N
GLY
104
A
O
CYS
137
A
O
CYS
101
A
N
ILE
200
A
N
ILE
148
A
O
TRP
199
A
O
TRP
147
A
N
GLY
211
A
N
GLY
156
A
O
VAL
212
A
O
VAL
157
A
N
GLU
229
A
N
GLU
182
A
O
SER
226
A
O
SER
179
A
N
GLY
183
A
N
GLY
134
A
O
ALA
169
A
O
ALA
121
A
N
VAL
177
A
N
VAL
128
1
P
MSU
5
B
MSU
1
1
Y
A
A
A
1
3.75
0.50
120.30
124.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
48
48
48
N
A
A
A
1
-6.35
0.50
120.30
113.95
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
48
48
48
N
1
5.14
0.50
120.30
125.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
65
65
65
N
1
5.33
0.50
120.30
125.63
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
90
90
90
N
1
5.70
0.80
106.30
112.00
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
105
105
105
N
1
-5.42
0.80
107.30
101.88
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
105
105
105
N
A
A
A
1
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
5.65
0.80
106.30
111.95
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
199
199
199
N
1
-5.06
0.80
107.30
102.24
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
199
199
199
N
1
A
ALA
39
-136.83
-81.88
1
A
PRO
95
-79.78
-157.25
1
A
PRO
120
-78.29
49.35
1
A
ALA
164
-171.65
149.50
1
A
SER
214
-106.60
-61.75
THE METHOXYSUCCINYL PORTION OF THE INHIBITOR WAS DISORDERED AND NO COORDINATES ARE INCLUDED FOR IT IN THIS ENTRY
0.141
0.141
2.20
17.5
10255
1
2.0
2.20
17.5
159
1584
10
0
1415
0.015
2.7
26.0
1.18
2.20
17.5
1GBC
10447
1
91.0
data collection
RIGAKU
AFC5 CONTROL SOFTWARE
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
RIGAKU
AFC5 CONTROL SOFTWARE
phasing
X-PLOR
3.1
ALPHA-LYTIC PROTEASE WITH MET 190 REPLACED BY ALA AND GLY 216 REPLACED BY ALA COMPLEX WITH METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLY
56
A
GLY
35
HELX_P
A
CYS
58
A
CYS
37
5
1
3
A
ALA
222
A
ALA
174
HELX_P
A
GLN
223
A
GLN
176
5
2
3
B
A
LEU
231
A
LEU
184
HELX_P
A
TYR
238
A
TYR
191
1
3
8
disulf
2.047
A
CYS
42
A
SG
CYS
17
1_555
A
CYS
58
A
SG
CYS
37
1_555
disulf
2.000
A
CYS
137
A
SG
CYS
101
1_555
A
CYS
159
A
SG
CYS
111
1_555
disulf
2.021
A
A
CYS
189
A
SG
CYS
137
1_555
A
CYS
220
A
SG
CYS
170
1_555
covale
1.407
none
A
SER
195
A
OG
SER
143
1_555
P
BLE
1
B
B
BLE
5
1_555
covale
1.330
both
P
BLE
1
B
N
BLE
5
1_555
P
PRO
2
B
C
PRO
4
1_555
HYDROLASE/HYDROLASE INHIBITOR
ACTIVE-SITE MUTATION, SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
A
PHE
94
A
PHE
59
1
A
PRO
95
A
PRO
60
-7.09
PRLA_LYSEN
UNP
1
1
P00778
MYVSNHRSRRVARVSVSCLVAALAAMSCGAALAADQVDPQLKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQ
FAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRYSLKQLQSAMEQLDAGANARVKGVSKPLDGVQSWYVDPRSNA
VVVKVDDGATEAGVDFVALSGADSAQVRIESSPGKLQTTANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVN
ATARIGGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTA
NYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG
1GBC
PDB
2
1GBC
(MSU)AAP(BLE)
200
397
1GBC
15
245
P00778
A
A
1
1
198
1
5
1GBC
1
5
1GBC
P
2
5
1
1
MET
engineered mutation
ALA
190
1GBC
A
P00778
UNP
337
138
1
GLY
engineered mutation
ALA
216
1GBC
A
P00778
UNP
360
161
2
5
2
6
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
32
A
GLU
8
A
ILE
35
A
ILE
11
A
SER
40
A
SER
15
A
SER
43
A
SER
18
A
PHE
45
A
PHE
21
A
ARG
48
A
ARG
25
A
A
THR
49
A
THR
28
A
THR
54
A
THR
33
A
ARG
103
A
ARG
64
A
LEU
108
A
LEU
69
A
ALA
82
A
ALA
49
A
VAL
91
A
VAL
58
A
THR
62
A
THR
43
A
ILE
66
A
ILE
46
A
ARG
120
A
ARG
78
A
ASN
120
A
ASN
81
A
D
A
SER
120
A
SER
84
A
THR
120
A
THR
87
H
K
A
GLY
156
A
GLY
108
A
THR
161
A
THR
113
A
ALA
135
A
ALA
99
A
GLY
140
A
GLY
104
A
SER
198
A
SER
146
A
ILE
200
A
ILE
148
A
ALA
209
A
ALA
154
A
ALA
216
A
ALA
161
A
SER
226
A
SER
179
A
ARG
230
A
ARG
183
A
THR
181
A
THR
132
A
GLY
183
A
GLY
134
A
ALA
169
A
ALA
121
A
TYR
171
A
TYR
123
A
GLY
175
A
GLY
126
A
VAL
177
A
VAL
128
BINDING SITE FOR RESIDUE SO4 A 1
A
SO4
1
Software
7
BINDING SITE FOR RESIDUE SO4 A 2
A
SO4
2
Software
8
BINDING SITE FOR CHAIN P OF METHOXYSUCCINYL-ALA-ALA-PRO-LEUCINE BORONIC ACID INHIBITOR
Software
18
A
SER
120
A
SER
83
G
7
4_555
A
GLY
123
A
GLY
90
7
5_565
A
SER
124
A
SER
91
7
5_565
A
THR
125
A
THR
92
7
5_565
A
ARG
192
A
ARG
140
7
1_555
A
HOH
253
E
HOH
7
5_565
A
HOH
293
E
HOH
7
5_565
A
ALA
15
A
ALA
1
A
8
3_665
A
ASN
15
A
ASN
2
B
8
3_665
A
ARG
230
A
ARG
183
8
1_555
A
PRO
233
A
PRO
186
8
1_555
A
HOH
269
E
HOH
8
3_665
A
HOH
280
E
HOH
8
1_555
A
HOH
350
E
HOH
8
1_555
A
HOH
364
E
HOH
8
3_665
A
HIS
57
A
HIS
36
18
1_555
A
ARG
122
A
ARG
89
18
5_565
A
TYR
171
A
TYR
123
18
1_555
A
GLY
191
A
GLY
139
18
1_555
A
GLY
193
A
GLY
141
18
1_555
A
ASP
194
A
ASP
142
18
1_555
A
SER
195
A
SER
143
18
1_555
A
SER
214
A
SER
159
18
1_555
A
GLY
215
A
GLY
160
18
1_555
A
ALA
216
A
ALA
161
18
1_555
A
VAL
218
A
VAL
163
18
1_555
A
HOH
388
E
HOH
18
1_555
A
HOH
392
E
HOH
18
1_555
P
HOH
141
F
HOH
18
1_555
P
HOH
145
F
HOH
18
1_555
P
HOH
153
F
HOH
18
1_555
P
HOH
160
F
HOH
18
1_555
P
HOH
161
F
HOH
18
1_555
154
P 32 2 1