1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wittekind, M. Mapelli, C. Lee, V. Goldfarb, V. Friedrichs, M.S. Meyers, C.A. Mueller, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 267 933 952 10.1006/jmbi.1996.0886 9135122 Solution structure of the Grb2 N-terminal SH3 domain complexed with a ten-residue peptide derived from SOS: direct refinement against NOEs, J-couplings and 1H and 13C chemical shifts. 1997 US Biochemistry BICHAW 0033 0006-2960 33 13531 Orientation of Peptide Fragments from SOS Proteins Bound to the N-Terminal SH3 Domain of Grb2 Determined by NMR Spectroscopy 1994 US Mol.Cell.Biol. MCEBD4 2044 0270-7306 13 5500 Molecular Cloning of the Mouse Grb2 Gene: Differential Interaction of the Grb2 Adaptor Protein with Epidermal Growth Factor and Nerve Growth Factor Receptors 1993 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 89 6511 Identification of Murine Homologues of the Drosophila Son of Sevenless Gene: Potential Activators of Ras 1992 10.2210/pdb1gbq/pdb pdb_00001gbq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8454.495 GRB2 N-TERMINAL SH3 DOMAIN 1 man polymer 1197.478 SOS-1 RESIDUES 1135 - 1144, AC-VPPPVPPRRR-NH2 1 man polymer no no GSRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVTD GSRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVTD A polypeptide(L) no yes (ACE)VPPPVPPRRR(NH2) XVPPPVPPRRRX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus BALB/C Escherichia Escherichia coli sample BL21 CYTOPLASMIC POTENTIAL 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21 (DE3) PGTX-2T (PHARMACIA) PLASMID BL21 house mouse Mus sample CYTOPLASM 10090 Mus musculus database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1997-09-04 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-12-23 REL REL 200 1 SEE JOURNAL ARTICLE 6.0 298. K TWO ENSEMBLES WERE CALCULATED. BOTH USED THE SAME SET OF NOE/ANGLE/J-COUPLING RESTRAINTS, BUT THEY DIFFER IN THAT THE 2ND ENSEMBLE ALSO INCLUDED 1H AND 13C CHEMICAL SHIFTS AS RESTRAINTS (SEE PRIMARY REFERENCE FOR DETAILS). DG, SA BRUNGER refinement X-PLOR structure solution X-PLOR 600 Varian UNITYPLUS n 1 -8 A n 2 -7 A n 3 -6 A n 4 -5 A n 5 -4 A n 6 -3 A n 7 -2 A n 8 -1 A n 9 0 A MET 1 n 10 MET 1 A GLU 2 n 11 GLU 2 A ALA 3 n 12 ALA 3 A ILE 4 n 13 ILE 4 A ALA 5 n 14 ALA 5 A LYS 6 n 15 LYS 6 A TYR 7 n 16 TYR 7 A ASP 8 n 17 ASP 8 A PHE 9 n 18 PHE 9 A LYS 10 n 19 LYS 10 A ALA 11 n 20 ALA 11 A THR 12 n 21 THR 12 A ALA 13 n 22 ALA 13 A ASP 14 n 23 ASP 14 A ASP 15 n 24 ASP 15 A GLU 16 n 25 GLU 16 A LEU 17 n 26 LEU 17 A SER 18 n 27 SER 18 A PHE 19 n 28 PHE 19 A LYS 20 n 29 LYS 20 A ARG 21 n 30 ARG 21 A GLY 22 n 31 GLY 22 A ASP 23 n 32 ASP 23 A ILE 24 n 33 ILE 24 A LEU 25 n 34 LEU 25 A LYS 26 n 35 LYS 26 A VAL 27 n 36 VAL 27 A LEU 28 n 37 LEU 28 A ASN 29 n 38 ASN 29 A GLU 30 n 39 GLU 30 A GLU 31 n 40 GLU 31 A CYS 32 n 41 CYS 32 A ASP 33 n 42 ASP 33 A GLN 34 n 43 GLN 34 A ASN 35 n 44 ASN 35 A TRP 36 n 45 TRP 36 A TYR 37 n 46 TYR 37 A LYS 38 n 47 LYS 38 A ALA 39 n 48 ALA 39 A GLU 40 n 49 GLU 40 A LEU 41 n 50 LEU 41 A ASN 42 n 51 ASN 42 A GLY 43 n 52 GLY 43 A LYS 44 n 53 LYS 44 A ASP 45 n 54 ASP 45 A GLY 46 n 55 GLY 46 A PHE 47 n 56 PHE 47 A ILE 48 n 57 ILE 48 A PRO 49 n 58 PRO 49 A LYS 50 n 59 LYS 50 A ASN 51 n 60 ASN 51 A TYR 52 n 61 TYR 52 A ILE 53 n 62 ILE 53 A GLU 54 n 63 GLU 54 A MET 55 n 64 MET 55 A LYS 56 n 65 LYS 56 A PRO 57 n 66 PRO 57 A n 67 58 A n 68 59 A n 69 60 A n 70 61 A n 71 62 A n 72 63 A n 73 64 A n 74 65 A ACE 0 n 1 ACE 0 B VAL 1 n 2 VAL 1 B PRO 2 n 3 PRO 2 B PRO 3 n 4 PRO 3 B PRO 4 n 5 PRO 4 B VAL 5 n 6 VAL 5 B PRO 6 n 7 PRO 6 B PRO 7 n 8 PRO 7 B ARG 8 n 9 ARG 8 B ARG 9 n 10 ARG 9 B ARG 10 n 11 ARG 10 B NH2 11 n 12 NH2 11 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 25 A O LEU 34 A N ALA 3 A N ALA 12 A O GLU 2 A O GLU 11 A N LYS 56 A N LYS 65 A O TYR 37 A O TYR 46 A N ILE 48 A N ILE 57 1 A GLY -8 A GLY 1 1 Y 1 A SER -7 A SER 2 1 Y 1 A ARG -6 A ARG 3 1 Y 1 A ARG -5 A ARG 4 1 Y 1 A ALA -4 A ALA 5 1 Y 1 A SER -3 A SER 6 1 Y 1 A VAL -2 A VAL 7 1 Y 1 A GLY -1 A GLY 8 1 Y 1 A SER 0 A SER 9 1 Y 1 A HIS 58 A HIS 67 1 Y 1 A PRO 59 A PRO 68 1 Y 1 A GLU 60 A GLU 69 1 Y 1 A PHE 61 A PHE 70 1 Y 1 A ILE 62 A ILE 71 1 Y 1 A VAL 63 A VAL 72 1 Y 1 A THR 64 A THR 73 1 Y 1 A ASP 65 A ASP 74 1 Y 1 A ARG 21 -45.80 95.10 1 A GLU 30 -172.97 113.72 1 A GLU 31 -166.03 31.22 1 A CYS 32 -154.05 -84.20 1 A GLN 34 -101.61 51.87 1 A ASN 35 -164.77 -23.23 1 A LYS 56 -153.28 83.70 1 B ARG 9 -160.06 108.53 model building X-PLOR refinement X-PLOR phasing X-PLOR SOLUTION NMR STRUCTURE OF THE GRB2 N-TERMINAL SH3 DOMAIN COMPLEXED WITH A TEN-RESIDUE PEPTIDE DERIVED FROM SOS DIRECT REFINEMENT AGAINST NOES, J-COUPLINGS, AND 1H AND 13C CHEMICAL SHIFTS, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N A LYS 50 A LYS 59 HELX_P A TYR 52 A TYR 61 5 1 3 covale 1.350 both B ACE 0 B C ACE 1 1_555 B VAL 1 B N VAL 2 1_555 covale 1.353 both B ARG 10 B C ARG 11 1_555 B NH2 11 B N NH2 12 1_555 COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE) COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), SH3 DOMAIN, COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE) complex GRB2_MOUSE UNP 1 1 Q60631 SOS1_MOUSE UNP 2 1135 Q62245 1 61 1GBQ 1 62 Q60631 A 1 10 71 1135 1144 1GBQ 1 10 Q62245 B 2 2 11 1 TRP conflict GLU 60 1GBQ A Q60631 UNP 60 69 1 PHE deletion 1GBQ A Q60631 UNP 62 1 GLY deletion 1GBQ A Q60631 UNP 63 1 LYS deletion 1GBQ A Q60631 UNP 64 3 2 anti-parallel anti-parallel anti-parallel A ILE 24 A ILE 33 A LYS 26 A LYS 35 A GLU 2 A GLU 11 A ALA 5 A ALA 14 A ILE 53 A ILE 62 A LYS 56 A LYS 65 A TRP 36 A TRP 45 A LEU 41 A LEU 50 A LYS 44 A LYS 53 A PRO 49 A PRO 58 BINDING SITE FOR RESIDUE NH2 B 11 B NH2 11 Software 1 B ARG 10 B ARG 11 1 1_555 1 P 1