0.010893
0.000000
0.000000
0.000000
0.015291
0.000000
0.000000
0.000000
0.025773
0.00000
0.00000
0.00000
Rao, Z.
Machin, K.
Isaacs, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
91.800
65.400
38.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
51
331
336
10.1107/S0907444994009893
15299299
A strategy for rapid and effective refinement applied to black swan lysozyme.
1995
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
51
331
A Strategy for Rapid and Effective Refinement Applied to Black Swan Lysozyme
1995
US
Thesis, University of Melbourne
2064
1043-1802
Structure Determination and Refinement of the Goose-Type Lysozyme from the Black Swan
1989
AT
Aust.J.Biol.Sci.
AJBSAM
0866
0004-9417
38
13
Structure of a G-Type Goose_Type Lysozyme at 2.5 Angstroms Resolution
1985
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
20434.172
AUSTRALIAN BLACK SWAN EGG WHITE LYSOZYME
3.2.1.17
1
man
polymer
18.015
water
152
nat
water
no
no
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVPASKTIAERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVPASKTIAERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
black swan
Cygnus
sample
8868
Cygnus atratus
2.85
56.83
repository
Initial release
Version format compliance
Version format compliance
1
0
1995-07-10
1
1
2008-03-24
1
2
2011-07-13
Y
1995-03-15
REL
HOH
water
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
HOH
215
2
HOH
HOH
215
A
HOH
216
2
HOH
HOH
216
A
HOH
217
2
HOH
HOH
217
A
HOH
218
2
HOH
HOH
218
A
HOH
219
2
HOH
HOH
219
A
HOH
220
2
HOH
HOH
220
A
HOH
221
2
HOH
HOH
221
A
HOH
222
2
HOH
HOH
222
A
HOH
223
2
HOH
HOH
223
A
HOH
224
2
HOH
HOH
224
A
HOH
225
2
HOH
HOH
225
A
HOH
226
2
HOH
HOH
226
A
HOH
227
2
HOH
HOH
227
A
HOH
228
2
HOH
HOH
228
A
HOH
229
2
HOH
HOH
229
A
HOH
230
2
HOH
HOH
230
A
HOH
231
2
HOH
HOH
231
A
HOH
232
2
HOH
HOH
232
A
HOH
233
2
HOH
HOH
233
A
HOH
234
2
HOH
HOH
234
A
HOH
235
2
HOH
HOH
235
A
HOH
236
2
HOH
HOH
236
A
HOH
237
2
HOH
HOH
237
A
HOH
238
2
HOH
HOH
238
A
HOH
239
2
HOH
HOH
239
A
HOH
240
2
HOH
HOH
240
A
HOH
241
2
HOH
HOH
241
A
HOH
242
2
HOH
HOH
242
A
HOH
243
2
HOH
HOH
243
A
HOH
244
2
HOH
HOH
244
A
HOH
245
2
HOH
HOH
245
A
HOH
246
2
HOH
HOH
246
A
HOH
247
2
HOH
HOH
247
A
HOH
248
2
HOH
HOH
248
A
HOH
249
2
HOH
HOH
249
A
HOH
250
2
HOH
HOH
250
A
HOH
251
2
HOH
HOH
251
A
HOH
252
2
HOH
HOH
252
A
HOH
253
2
HOH
HOH
253
A
HOH
254
2
HOH
HOH
254
A
HOH
255
2
HOH
HOH
255
A
HOH
256
2
HOH
HOH
256
A
HOH
257
2
HOH
HOH
257
A
HOH
258
2
HOH
HOH
258
A
HOH
259
2
HOH
HOH
259
A
HOH
260
2
HOH
HOH
260
A
HOH
261
2
HOH
HOH
261
A
HOH
262
2
HOH
HOH
262
A
HOH
263
2
HOH
HOH
263
A
HOH
264
2
HOH
HOH
264
A
HOH
265
2
HOH
HOH
265
A
HOH
266
2
HOH
HOH
266
A
HOH
267
2
HOH
HOH
267
A
HOH
268
2
HOH
HOH
268
A
HOH
269
2
HOH
HOH
269
A
HOH
270
2
HOH
HOH
270
A
HOH
271
2
HOH
HOH
271
A
HOH
272
2
HOH
HOH
272
A
HOH
273
2
HOH
HOH
273
A
HOH
274
2
HOH
HOH
274
A
HOH
275
2
HOH
HOH
275
A
HOH
276
2
HOH
HOH
276
A
HOH
277
2
HOH
HOH
277
A
HOH
278
2
HOH
HOH
278
A
HOH
279
2
HOH
HOH
279
A
HOH
280
2
HOH
HOH
280
A
HOH
281
2
HOH
HOH
281
A
HOH
282
2
HOH
HOH
282
A
HOH
283
2
HOH
HOH
283
A
HOH
284
2
HOH
HOH
284
A
HOH
285
2
HOH
HOH
285
A
HOH
286
2
HOH
HOH
286
A
HOH
287
2
HOH
HOH
287
A
HOH
288
2
HOH
HOH
288
A
HOH
289
2
HOH
HOH
289
A
HOH
290
2
HOH
HOH
290
A
HOH
291
2
HOH
HOH
291
A
HOH
292
2
HOH
HOH
292
A
HOH
293
2
HOH
HOH
293
A
HOH
294
2
HOH
HOH
294
A
HOH
295
2
HOH
HOH
295
A
HOH
296
2
HOH
HOH
296
A
HOH
297
2
HOH
HOH
297
A
HOH
298
2
HOH
HOH
298
A
HOH
299
2
HOH
HOH
299
A
HOH
300
2
HOH
HOH
300
A
HOH
301
2
HOH
HOH
301
A
HOH
302
2
HOH
HOH
302
A
HOH
303
2
HOH
HOH
303
A
HOH
304
2
HOH
HOH
304
A
HOH
305
2
HOH
HOH
305
A
HOH
306
2
HOH
HOH
306
A
HOH
307
2
HOH
HOH
307
A
HOH
308
2
HOH
HOH
308
A
HOH
309
2
HOH
HOH
309
A
HOH
310
2
HOH
HOH
310
A
HOH
311
2
HOH
HOH
311
A
HOH
312
2
HOH
HOH
312
A
HOH
313
2
HOH
HOH
313
A
HOH
314
2
HOH
HOH
314
A
HOH
315
2
HOH
HOH
315
A
HOH
316
2
HOH
HOH
316
A
HOH
317
2
HOH
HOH
317
A
HOH
318
2
HOH
HOH
318
A
HOH
319
2
HOH
HOH
319
A
HOH
320
2
HOH
HOH
320
A
HOH
321
2
HOH
HOH
321
A
HOH
322
2
HOH
HOH
322
A
HOH
323
2
HOH
HOH
323
A
HOH
324
2
HOH
HOH
324
A
HOH
325
2
HOH
HOH
325
A
HOH
326
2
HOH
HOH
326
A
HOH
327
2
HOH
HOH
327
A
HOH
328
2
HOH
HOH
328
A
HOH
329
2
HOH
HOH
329
A
HOH
330
2
HOH
HOH
330
A
HOH
331
2
HOH
HOH
331
A
HOH
332
2
HOH
HOH
332
A
HOH
333
2
HOH
HOH
333
A
HOH
334
2
HOH
HOH
334
A
HOH
335
2
HOH
HOH
335
A
HOH
336
2
HOH
HOH
336
A
HOH
337
2
HOH
HOH
337
A
HOH
338
2
HOH
HOH
338
A
HOH
339
2
HOH
HOH
339
A
HOH
340
2
HOH
HOH
340
A
HOH
341
2
HOH
HOH
341
A
HOH
342
2
HOH
HOH
342
A
HOH
343
2
HOH
HOH
343
A
HOH
344
2
HOH
HOH
344
A
HOH
345
2
HOH
HOH
345
A
HOH
346
2
HOH
HOH
346
A
HOH
347
2
HOH
HOH
347
A
HOH
348
2
HOH
HOH
348
A
HOH
349
2
HOH
HOH
349
A
HOH
350
2
HOH
HOH
350
A
HOH
351
2
HOH
HOH
351
A
HOH
352
2
HOH
HOH
352
A
ARG
1
n
1
ARG
1
A
THR
2
n
2
THR
2
A
ASP
3
n
3
ASP
3
A
CYS
4
n
4
CYS
4
A
TYR
5
n
5
TYR
5
A
GLY
6
n
6
GLY
6
A
ASN
7
n
7
ASN
7
A
VAL
8
n
8
VAL
8
A
ASN
9
n
9
ASN
9
A
ARG
10
n
10
ARG
10
A
ILE
11
n
11
ILE
11
A
ASP
12
n
12
ASP
12
A
THR
13
n
13
THR
13
A
THR
14
n
14
THR
14
A
GLY
15
n
15
GLY
15
A
ALA
16
n
16
ALA
16
A
SER
17
n
17
SER
17
A
CYS
18
n
18
CYS
18
A
LYS
19
n
19
LYS
19
A
THR
20
n
20
THR
20
A
ALA
21
n
21
ALA
21
A
LYS
22
n
22
LYS
22
A
PRO
23
n
23
PRO
23
A
GLU
24
n
24
GLU
24
A
GLY
25
n
25
GLY
25
A
LEU
26
n
26
LEU
26
A
SER
27
n
27
SER
27
A
TYR
28
n
28
TYR
28
A
CYS
29
n
29
CYS
29
A
GLY
30
n
30
GLY
30
A
VAL
31
n
31
VAL
31
A
PRO
32
n
32
PRO
32
A
ALA
33
n
33
ALA
33
A
SER
34
n
34
SER
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
GLU
39
n
39
GLU
39
A
ARG
40
n
40
ARG
40
A
ASP
41
n
41
ASP
41
A
LEU
42
n
42
LEU
42
A
LYS
43
n
43
LYS
43
A
ALA
44
n
44
ALA
44
A
MET
45
n
45
MET
45
A
ASP
46
n
46
ASP
46
A
ARG
47
n
47
ARG
47
A
TYR
48
n
48
TYR
48
A
LYS
49
n
49
LYS
49
A
THR
50
n
50
THR
50
A
ILE
51
n
51
ILE
51
A
ILE
52
n
52
ILE
52
A
LYS
53
n
53
LYS
53
A
LYS
54
n
54
LYS
54
A
VAL
55
n
55
VAL
55
A
GLY
56
n
56
GLY
56
A
GLU
57
n
57
GLU
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
CYS
60
n
60
CYS
60
A
VAL
61
n
61
VAL
61
A
GLU
62
n
62
GLU
62
A
PRO
63
n
63
PRO
63
A
ALA
64
n
64
ALA
64
A
VAL
65
n
65
VAL
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
ILE
69
n
69
ILE
69
A
ILE
70
n
70
ILE
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
GLU
73
n
73
GLU
73
A
SER
74
n
74
SER
74
A
HIS
75
n
75
HIS
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
LYS
78
n
78
LYS
78
A
VAL
79
n
79
VAL
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
ASN
82
n
82
ASN
82
A
GLY
83
n
83
GLY
83
A
TRP
84
n
84
TRP
84
A
GLY
85
n
85
GLY
85
A
ASP
86
n
86
ASP
86
A
ARG
87
n
87
ARG
87
A
GLY
88
n
88
GLY
88
A
ASN
89
n
89
ASN
89
A
GLY
90
n
90
GLY
90
A
PHE
91
n
91
PHE
91
A
GLY
92
n
92
GLY
92
A
LEU
93
n
93
LEU
93
A
MET
94
n
94
MET
94
A
GLN
95
n
95
GLN
95
A
VAL
96
n
96
VAL
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
ARG
99
n
99
ARG
99
A
SER
100
n
100
SER
100
A
HIS
101
n
101
HIS
101
A
LYS
102
n
102
LYS
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
TRP
107
n
107
TRP
107
A
ASN
108
n
108
ASN
108
A
GLY
109
n
109
GLY
109
A
GLU
110
n
110
GLU
110
A
VAL
111
n
111
VAL
111
A
HIS
112
n
112
HIS
112
A
ILE
113
n
113
ILE
113
A
THR
114
n
114
THR
114
A
GLN
115
n
115
GLN
115
A
GLY
116
n
116
GLY
116
A
THR
117
n
117
THR
117
A
THR
118
n
118
THR
118
A
ILE
119
n
119
ILE
119
A
LEU
120
n
120
LEU
120
A
THR
121
n
121
THR
121
A
ASP
122
n
122
ASP
122
A
PHE
123
n
123
PHE
123
A
ILE
124
n
124
ILE
124
A
LYS
125
n
125
LYS
125
A
ARG
126
n
126
ARG
126
A
ILE
127
n
127
ILE
127
A
GLN
128
n
128
GLN
128
A
LYS
129
n
129
LYS
129
A
LYS
130
n
130
LYS
130
A
PHE
131
n
131
PHE
131
A
PRO
132
n
132
PRO
132
A
SER
133
n
133
SER
133
A
TRP
134
n
134
TRP
134
A
THR
135
n
135
THR
135
A
LYS
136
n
136
LYS
136
A
ASP
137
n
137
ASP
137
A
GLN
138
n
138
GLN
138
A
GLN
139
n
139
GLN
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
GLY
142
n
142
GLY
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ALA
146
A
TYR
147
n
147
TYR
147
A
ASN
148
n
148
ASN
148
A
ALA
149
n
149
ALA
149
A
GLY
150
n
150
GLY
150
A
ALA
151
n
151
ALA
151
A
GLY
152
n
152
GLY
152
A
ASN
153
n
153
ASN
153
A
VAL
154
n
154
VAL
154
A
ARG
155
n
155
ARG
155
A
SER
156
n
156
SER
156
A
TYR
157
n
157
TYR
157
A
ALA
158
n
158
ALA
158
A
ARG
159
n
159
ARG
159
A
MET
160
n
160
MET
160
A
ASP
161
n
161
ASP
161
A
ILE
162
n
162
ILE
162
A
GLY
163
n
163
GLY
163
A
THR
164
n
164
THR
164
A
THR
165
n
165
THR
165
A
HIS
166
n
166
HIS
166
A
ASP
167
n
167
ASP
167
A
ASP
168
n
168
ASP
168
A
TYR
169
n
169
TYR
169
A
ALA
170
n
170
ALA
170
A
ASN
171
n
171
ASN
171
A
ASP
172
n
172
ASP
172
A
VAL
173
n
173
VAL
173
A
VAL
174
n
174
VAL
174
A
ALA
175
n
175
ALA
175
A
ARG
176
n
176
ARG
176
A
ALA
177
n
177
ALA
177
A
GLN
178
n
178
GLN
178
A
TYR
179
n
179
TYR
179
A
TYR
180
n
180
TYR
180
A
LYS
181
n
181
LYS
181
A
GLN
182
n
182
GLN
182
A
HIS
183
n
183
HIS
183
A
GLY
184
n
184
GLY
184
A
TYR
185
n
185
TYR
185
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
91
A
N
PHE
91
A
O
VAL
96
A
O
VAL
96
1
A
CYS
29
-126.70
-165.34
1
A
ASP
168
-150.51
16.84
0.184
1.5
20.
19189
95.
1
0.0
1.5
20.
152
1586
0
0
1434
1.8
20.
1GBS
19189
0.0
1
95.
model building
X-PLOR
refinement
X-PLOR
refinement
PROTEIN
refinement
CCP4
phasing
X-PLOR
LYSOZYME (E.C.3.2.1.17)
CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION
1
N
N
2
N
N
A
VAL
8
A
VAL
8
HELX_P
A
ARG
10
A
ARG
10
5
1
3
A
CYS
18
A
CYS
18
HELX_P
A
GLU
24
A
GLU
24
1
2
7
A
GLY
30
A
GLY
30
HELX_P
A
ARG
47
A
ARG
47
1
3
18
A
LYS
49
A
LYS
49
HELX_P
A
LEU
59
A
LEU
59
1
4
11
A
PRO
63
A
PRO
63
HELX_P
A
SER
74
A
SER
74
1
5
12
A
GLU
110
A
GLU
110
HELX_P
A
LYS
130
A
LYS
130
1
6
21
A
LYS
136
A
LYS
136
HELX_P
A
ALA
149
A
ALA
149
1
7
14
A
ALA
151
A
ALA
151
HELX_P
A
ASN
153
A
ASN
153
5
8
3
A
THR
165
A
THR
165
HELX_P
A
ASP
167
A
ASP
167
5
9
3
A
TYR
169
A
TYR
169
HELX_P
A
GLN
182
A
GLN
182
1
10
14
disulf
2.037
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
60
A
SG
CYS
60
1_555
disulf
2.036
A
CYS
18
A
SG
CYS
18
1_555
A
CYS
29
A
SG
CYS
29
1_555
HYDROLASE (O-GLYCOSYL)
HYDROLASE (O-GLYCOSYL)
LYG_CYGAT
UNP
1
1
P00717
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVPASKTIAERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
1
185
1GBS
1
185
P00717
A
1
1
185
2
anti-parallel
A
GLY
90
A
GLY
90
A
PHE
91
A
PHE
91
A
VAL
96
A
VAL
96
A
ASP
97
A
ASP
97
18
P 21 21 2