0.02081
0.00000
0.00000
0.00000
0.00789
0.00000
0.00000
0.00000
0.01199
0.00000
0.00000
0.00000
Nishida, M.
Nagata, K.
Hachimori, Y.
Ogura, K.
Inagaki, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
48.050
126.820
83.370
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
R
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
20
2995
3007
10.1093/emboj/20.12.2995
11406576
Novel recognition mode between Vav and Grb2 SH3 domains.
2001
10.2210/pdb1gcq/pdb
pdb_00001gcq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1999-12-18
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0375
1.0
BL41XU
SPring-8
1.0375
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
6998.661
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2
C-TERMINAL SH3 DOMAIN
2
man
polymer
8029.990
VAV PROTO-ONCOGENE
N-TERMINAL SH3 DOMAIN
1
man
polymer
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
1
syn
non-polymer
18.015
water
189
nat
water
no
no
GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
A,B
polypeptide(L)
no
no
GSHMPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYVH
GSHMPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYVH
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PGEX-2T
house mouse
Mus
Escherichia
sample
HEMATOPOIETIC CELLS
10090
Mus musculus
562
Escherichia coli
PLASMID
PET28A(+)
1
2.89
57.5
VAPOR DIFFUSION, HANGING DROP
6.5
2-methyl-2,4-pentanediol, imidazole, magnesium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.2K
293.2
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-08-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1GCP contains Vav SH3 domains.
RCSB
Y
PDBJ
2000-08-08
REL
REL
MRD
(4R)-2-METHYLPENTANE-2,4-DIOL
HOH
water
MPD
201
3
MRD
MRD
218
A
HOH
2
4
HOH
HOH
219
A
HOH
7
4
HOH
HOH
220
A
HOH
8
4
HOH
HOH
221
A
HOH
14
4
HOH
HOH
222
A
HOH
16
4
HOH
HOH
223
A
HOH
17
4
HOH
HOH
224
A
HOH
19
4
HOH
HOH
225
A
HOH
21
4
HOH
HOH
226
A
HOH
31
4
HOH
HOH
227
A
HOH
35
4
HOH
HOH
228
A
HOH
38
4
HOH
HOH
229
A
HOH
40
4
HOH
HOH
230
A
HOH
42
4
HOH
HOH
231
A
HOH
43
4
HOH
HOH
232
A
HOH
44
4
HOH
HOH
233
A
HOH
61
4
HOH
HOH
234
A
HOH
65
4
HOH
HOH
235
A
HOH
67
4
HOH
HOH
236
A
HOH
71
4
HOH
HOH
237
A
HOH
77
4
HOH
HOH
238
A
HOH
78
4
HOH
HOH
239
A
HOH
81
4
HOH
HOH
240
A
HOH
89
4
HOH
HOH
241
A
HOH
92
4
HOH
HOH
242
A
HOH
94
4
HOH
HOH
243
A
HOH
98
4
HOH
HOH
244
A
HOH
103
4
HOH
HOH
245
A
HOH
104
4
HOH
HOH
246
A
HOH
106
4
HOH
HOH
247
A
HOH
107
4
HOH
HOH
248
A
HOH
108
4
HOH
HOH
249
A
HOH
110
4
HOH
HOH
250
A
HOH
111
4
HOH
HOH
251
A
HOH
112
4
HOH
HOH
252
A
HOH
115
4
HOH
HOH
253
A
HOH
116
4
HOH
HOH
254
A
HOH
118
4
HOH
HOH
255
A
HOH
123
4
HOH
HOH
256
A
HOH
127
4
HOH
HOH
257
A
HOH
131
4
HOH
HOH
258
A
HOH
133
4
HOH
HOH
259
A
HOH
134
4
HOH
HOH
260
A
HOH
137
4
HOH
HOH
261
A
HOH
138
4
HOH
HOH
262
A
HOH
139
4
HOH
HOH
263
A
HOH
140
4
HOH
HOH
264
A
HOH
141
4
HOH
HOH
265
A
HOH
142
4
HOH
HOH
266
A
HOH
154
4
HOH
HOH
267
A
HOH
158
4
HOH
HOH
268
A
HOH
161
4
HOH
HOH
269
A
HOH
166
4
HOH
HOH
270
A
HOH
167
4
HOH
HOH
271
A
HOH
171
4
HOH
HOH
272
A
HOH
172
4
HOH
HOH
273
A
HOH
173
4
HOH
HOH
274
A
HOH
174
4
HOH
HOH
275
A
HOH
182
4
HOH
HOH
276
A
HOH
183
4
HOH
HOH
277
A
HOH
184
4
HOH
HOH
278
A
HOH
185
4
HOH
HOH
279
A
HOH
1
4
HOH
HOH
218
B
HOH
6
4
HOH
HOH
219
B
HOH
11
4
HOH
HOH
220
B
HOH
13
4
HOH
HOH
221
B
HOH
26
4
HOH
HOH
222
B
HOH
27
4
HOH
HOH
223
B
HOH
32
4
HOH
HOH
224
B
HOH
41
4
HOH
HOH
225
B
HOH
47
4
HOH
HOH
226
B
HOH
51
4
HOH
HOH
227
B
HOH
53
4
HOH
HOH
228
B
HOH
54
4
HOH
HOH
229
B
HOH
68
4
HOH
HOH
230
B
HOH
69
4
HOH
HOH
231
B
HOH
72
4
HOH
HOH
232
B
HOH
74
4
HOH
HOH
233
B
HOH
75
4
HOH
HOH
234
B
HOH
79
4
HOH
HOH
235
B
HOH
80
4
HOH
HOH
236
B
HOH
82
4
HOH
HOH
237
B
HOH
83
4
HOH
HOH
238
B
HOH
85
4
HOH
HOH
239
B
HOH
87
4
HOH
HOH
240
B
HOH
93
4
HOH
HOH
241
B
HOH
95
4
HOH
HOH
242
B
HOH
96
4
HOH
HOH
243
B
HOH
97
4
HOH
HOH
244
B
HOH
109
4
HOH
HOH
245
B
HOH
119
4
HOH
HOH
246
B
HOH
120
4
HOH
HOH
247
B
HOH
121
4
HOH
HOH
248
B
HOH
122
4
HOH
HOH
249
B
HOH
124
4
HOH
HOH
250
B
HOH
125
4
HOH
HOH
251
B
HOH
129
4
HOH
HOH
252
B
HOH
135
4
HOH
HOH
253
B
HOH
145
4
HOH
HOH
254
B
HOH
146
4
HOH
HOH
255
B
HOH
147
4
HOH
HOH
256
B
HOH
148
4
HOH
HOH
257
B
HOH
149
4
HOH
HOH
258
B
HOH
150
4
HOH
HOH
259
B
HOH
151
4
HOH
HOH
260
B
HOH
152
4
HOH
HOH
261
B
HOH
156
4
HOH
HOH
262
B
HOH
157
4
HOH
HOH
263
B
HOH
160
4
HOH
HOH
264
B
HOH
178
4
HOH
HOH
265
B
HOH
179
4
HOH
HOH
266
B
HOH
187
4
HOH
HOH
267
B
HOH
188
4
HOH
HOH
268
B
HOH
189
4
HOH
HOH
269
B
HOH
3
4
HOH
HOH
3
C
HOH
4
4
HOH
HOH
4
C
HOH
5
4
HOH
HOH
5
C
HOH
9
4
HOH
HOH
9
C
HOH
10
4
HOH
HOH
10
C
HOH
12
4
HOH
HOH
12
C
HOH
15
4
HOH
HOH
15
C
HOH
18
4
HOH
HOH
18
C
HOH
20
4
HOH
HOH
20
C
HOH
22
4
HOH
HOH
22
C
HOH
23
4
HOH
HOH
23
C
HOH
24
4
HOH
HOH
24
C
HOH
25
4
HOH
HOH
25
C
HOH
28
4
HOH
HOH
28
C
HOH
29
4
HOH
HOH
29
C
HOH
30
4
HOH
HOH
30
C
HOH
33
4
HOH
HOH
33
C
HOH
34
4
HOH
HOH
34
C
HOH
36
4
HOH
HOH
36
C
HOH
37
4
HOH
HOH
37
C
HOH
39
4
HOH
HOH
39
C
HOH
45
4
HOH
HOH
45
C
HOH
46
4
HOH
HOH
46
C
HOH
48
4
HOH
HOH
48
C
HOH
49
4
HOH
HOH
49
C
HOH
50
4
HOH
HOH
50
C
HOH
52
4
HOH
HOH
52
C
HOH
55
4
HOH
HOH
55
C
HOH
56
4
HOH
HOH
56
C
HOH
57
4
HOH
HOH
57
C
HOH
58
4
HOH
HOH
58
C
HOH
59
4
HOH
HOH
59
C
HOH
60
4
HOH
HOH
60
C
HOH
62
4
HOH
HOH
62
C
HOH
63
4
HOH
HOH
63
C
HOH
64
4
HOH
HOH
64
C
HOH
66
4
HOH
HOH
66
C
HOH
70
4
HOH
HOH
70
C
HOH
73
4
HOH
HOH
73
C
HOH
76
4
HOH
HOH
76
C
HOH
84
4
HOH
HOH
84
C
HOH
86
4
HOH
HOH
86
C
HOH
88
4
HOH
HOH
88
C
HOH
90
4
HOH
HOH
90
C
HOH
91
4
HOH
HOH
91
C
HOH
99
4
HOH
HOH
99
C
HOH
100
4
HOH
HOH
100
C
HOH
101
4
HOH
HOH
101
C
HOH
102
4
HOH
HOH
102
C
HOH
105
4
HOH
HOH
105
C
HOH
113
4
HOH
HOH
113
C
HOH
114
4
HOH
HOH
114
C
HOH
117
4
HOH
HOH
117
C
HOH
126
4
HOH
HOH
126
C
HOH
128
4
HOH
HOH
128
C
HOH
130
4
HOH
HOH
130
C
HOH
132
4
HOH
HOH
132
C
HOH
136
4
HOH
HOH
136
C
HOH
143
4
HOH
HOH
143
C
HOH
144
4
HOH
HOH
144
C
HOH
153
4
HOH
HOH
153
C
HOH
155
4
HOH
HOH
155
C
HOH
159
4
HOH
HOH
159
C
HOH
162
4
HOH
HOH
162
C
HOH
163
4
HOH
HOH
163
C
HOH
164
4
HOH
HOH
164
C
HOH
165
4
HOH
HOH
165
C
HOH
168
4
HOH
HOH
168
C
HOH
169
4
HOH
HOH
169
C
HOH
170
4
HOH
HOH
170
C
HOH
175
4
HOH
HOH
175
C
HOH
176
4
HOH
HOH
176
C
HOH
177
4
HOH
HOH
177
C
HOH
180
4
HOH
HOH
180
C
HOH
181
4
HOH
HOH
181
C
HOH
186
4
HOH
HOH
186
C
n
1
157
A
SER
158
n
2
SER
158
A
THR
159
n
3
THR
159
A
TYR
160
n
4
TYR
160
A
VAL
161
n
5
VAL
161
A
GLN
162
n
6
GLN
162
A
ALA
163
n
7
ALA
163
A
LEU
164
n
8
LEU
164
A
PHE
165
n
9
PHE
165
A
ASP
166
n
10
ASP
166
A
PHE
167
n
11
PHE
167
A
ASP
168
n
12
ASP
168
A
PRO
169
n
13
PRO
169
A
GLN
170
n
14
GLN
170
A
GLU
171
n
15
GLU
171
A
ASP
172
n
16
ASP
172
A
GLY
173
n
17
GLY
173
A
GLU
174
n
18
GLU
174
A
LEU
175
n
19
LEU
175
A
GLY
176
n
20
GLY
176
A
PHE
177
n
21
PHE
177
A
ARG
178
n
22
ARG
178
A
ARG
179
n
23
ARG
179
A
GLY
180
n
24
GLY
180
A
ASP
181
n
25
ASP
181
A
PHE
182
n
26
PHE
182
A
ILE
183
n
27
ILE
183
A
HIS
184
n
28
HIS
184
A
VAL
185
n
29
VAL
185
A
MET
186
n
30
MET
186
A
ASP
187
n
31
ASP
187
A
ASN
188
n
32
ASN
188
A
SER
189
n
33
SER
189
A
ASP
190
n
34
ASP
190
A
PRO
191
n
35
PRO
191
A
ASN
192
n
36
ASN
192
A
TRP
193
n
37
TRP
193
A
TRP
194
n
38
TRP
194
A
LYS
195
n
39
LYS
195
A
GLY
196
n
40
GLY
196
A
ALA
197
n
41
ALA
197
A
CYS
198
n
42
CYS
198
A
HIS
199
n
43
HIS
199
A
GLY
200
n
44
GLY
200
A
GLN
201
n
45
GLN
201
A
THR
202
n
46
THR
202
A
GLY
203
n
47
GLY
203
A
MET
204
n
48
MET
204
A
PHE
205
n
49
PHE
205
A
PRO
206
n
50
PRO
206
A
ARG
207
n
51
ARG
207
A
ASN
208
n
52
ASN
208
A
TYR
209
n
53
TYR
209
A
VAL
210
n
54
VAL
210
A
THR
211
n
55
THR
211
A
PRO
212
n
56
PRO
212
A
VAL
213
n
57
VAL
213
A
n
58
214
A
n
59
215
A
n
60
216
A
n
61
217
A
n
1
157
B
n
2
158
B
THR
159
n
3
THR
159
B
TYR
160
n
4
TYR
160
B
VAL
161
n
5
VAL
161
B
GLN
162
n
6
GLN
162
B
ALA
163
n
7
ALA
163
B
LEU
164
n
8
LEU
164
B
PHE
165
n
9
PHE
165
B
ASP
166
n
10
ASP
166
B
PHE
167
n
11
PHE
167
B
ASP
168
n
12
ASP
168
B
PRO
169
n
13
PRO
169
B
GLN
170
n
14
GLN
170
B
GLU
171
n
15
GLU
171
B
ASP
172
n
16
ASP
172
B
GLY
173
n
17
GLY
173
B
GLU
174
n
18
GLU
174
B
LEU
175
n
19
LEU
175
B
GLY
176
n
20
GLY
176
B
PHE
177
n
21
PHE
177
B
ARG
178
n
22
ARG
178
B
ARG
179
n
23
ARG
179
B
GLY
180
n
24
GLY
180
B
ASP
181
n
25
ASP
181
B
PHE
182
n
26
PHE
182
B
ILE
183
n
27
ILE
183
B
HIS
184
n
28
HIS
184
B
VAL
185
n
29
VAL
185
B
MET
186
n
30
MET
186
B
ASP
187
n
31
ASP
187
B
ASN
188
n
32
ASN
188
B
SER
189
n
33
SER
189
B
ASP
190
n
34
ASP
190
B
PRO
191
n
35
PRO
191
B
ASN
192
n
36
ASN
192
B
TRP
193
n
37
TRP
193
B
TRP
194
n
38
TRP
194
B
LYS
195
n
39
LYS
195
B
GLY
196
n
40
GLY
196
B
ALA
197
n
41
ALA
197
B
CYS
198
n
42
CYS
198
B
HIS
199
n
43
HIS
199
B
GLY
200
n
44
GLY
200
B
GLN
201
n
45
GLN
201
B
THR
202
n
46
THR
202
B
GLY
203
n
47
GLY
203
B
MET
204
n
48
MET
204
B
PHE
205
n
49
PHE
205
B
PRO
206
n
50
PRO
206
B
ARG
207
n
51
ARG
207
B
ASN
208
n
52
ASN
208
B
TYR
209
n
53
TYR
209
B
VAL
210
n
54
VAL
210
B
THR
211
n
55
THR
211
B
PRO
212
n
56
PRO
212
B
VAL
213
n
57
VAL
213
B
ASN
214
n
58
ASN
214
B
ARG
215
n
59
ARG
215
B
n
60
216
B
n
61
217
B
GLY
591
n
1
GLY
591
C
SER
592
n
2
SER
592
C
HIS
593
n
3
HIS
593
C
MET
594
n
4
MET
594
C
PRO
595
n
5
PRO
595
C
LYS
596
n
6
LYS
596
C
MET
597
n
7
MET
597
C
GLU
598
n
8
GLU
598
C
VAL
599
n
9
VAL
599
C
PHE
600
n
10
PHE
600
C
GLN
601
n
11
GLN
601
C
GLU
602
n
12
GLU
602
C
TYR
603
n
13
TYR
603
C
TYR
604
n
14
TYR
604
C
GLY
605
n
15
GLY
605
C
ILE
606
n
16
ILE
606
C
PRO
607
n
17
PRO
607
C
PRO
608
n
18
PRO
608
C
PRO
609
n
19
PRO
609
C
PRO
610
n
20
PRO
610
C
GLY
611
n
21
GLY
611
C
ALA
612
n
22
ALA
612
C
PHE
613
n
23
PHE
613
C
GLY
614
n
24
GLY
614
C
PRO
615
n
25
PRO
615
C
PHE
616
n
26
PHE
616
C
LEU
617
n
27
LEU
617
C
ARG
618
n
28
ARG
618
C
LEU
619
n
29
LEU
619
C
ASN
620
n
30
ASN
620
C
PRO
621
n
31
PRO
621
C
GLY
622
n
32
GLY
622
C
ASP
623
n
33
ASP
623
C
ILE
624
n
34
ILE
624
C
VAL
625
n
35
VAL
625
C
GLU
626
n
36
GLU
626
C
LEU
627
n
37
LEU
627
C
THR
628
n
38
THR
628
C
LYS
629
n
39
LYS
629
C
ALA
630
n
40
ALA
630
C
GLU
631
n
41
GLU
631
C
ALA
632
n
42
ALA
632
C
GLU
633
n
43
GLU
633
C
HIS
634
n
44
HIS
634
C
ASN
635
n
45
ASN
635
C
TRP
636
n
46
TRP
636
C
TRP
637
n
47
TRP
637
C
GLU
638
n
48
GLU
638
C
GLY
639
n
49
GLY
639
C
ARG
640
n
50
ARG
640
C
ASN
641
n
51
ASN
641
C
THR
642
n
52
THR
642
C
ALA
643
n
53
ALA
643
C
THR
644
n
54
THR
644
C
ASN
645
n
55
ASN
645
C
GLU
646
n
56
GLU
646
C
VAL
647
n
57
VAL
647
C
GLY
648
n
58
GLY
648
C
TRP
649
n
59
TRP
649
C
PHE
650
n
60
PHE
650
C
PRO
651
n
61
PRO
651
C
CYS
652
n
62
CYS
652
C
ASN
653
n
63
ASN
653
C
ARG
654
n
64
ARG
654
C
VAL
655
n
65
VAL
655
C
HIS
656
n
66
HIS
656
C
PRO
657
n
67
PRO
657
C
TYR
658
n
68
TYR
658
C
VAL
659
n
69
VAL
659
C
n
70
660
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
205
A
N
PHE
49
A
O
TRP
194
A
O
TRP
38
A
O
ALA
197
A
O
ALA
41
A
N
HIS
184
A
N
HIS
28
A
N
VAL
185
A
N
VAL
29
A
O
THR
159
A
O
THR
3
A
N
GLN
162
A
N
GLN
6
A
O
THR
211
A
O
THR
55
B
O
PHE
205
B
O
PHE
49
B
N
TRP
194
B
N
TRP
38
B
O
ALA
197
B
O
ALA
41
B
N
HIS
184
B
N
HIS
28
B
N
ILE
183
B
N
ILE
27
B
O
VAL
161
B
O
VAL
5
B
N
GLN
162
B
N
GLN
6
B
O
THR
211
B
O
THR
55
C
O
PHE
650
C
O
PHE
60
C
N
TRP
637
C
N
TRP
47
C
O
ARG
640
C
O
ARG
50
C
N
GLU
626
C
N
GLU
36
C
O
VAL
625
C
O
VAL
35
C
N
MET
597
C
N
MET
7
C
N
GLU
598
C
N
GLU
8
C
O
HIS
656
C
O
HIS
66
1
A
GLY
157
A
GLY
1
1
Y
1
A
ASN
214
A
ASN
58
1
Y
1
A
ARG
215
A
ARG
59
1
Y
1
A
ASN
216
A
ASN
60
1
Y
1
A
VAL
217
A
VAL
61
1
Y
1
B
GLY
157
B
GLY
1
1
Y
1
B
SER
158
B
SER
2
1
Y
1
B
ASN
216
B
ASN
60
1
Y
1
B
VAL
217
B
VAL
61
1
Y
1
C
HIS
660
C
HIS
70
1
Y
1
C
SER
592
-164.57
-166.06
19.1
0.235
0.201
0.207
0.203
1.68
8.0
1358
28127
27162
5
93.1
19.1
RANDOM
1
2.0
0.0
MIR
Engh & Huber
1.68
8.0
197
1678
0
0
1481
0.009
1.395
27.7
1.27
1.5
2.0
2.0
2.5
17.1
1.68
39.5
1GCQ
28649
28649
0.0
-10000
0.066
1
7.2
10.3
97.2
0.199
1.68
1.77
3523
3.2
83.9
phasing
MLPHARE
refinement
X-PLOR
3.1
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
C
PRO
609
C
PRO
19
HELX_P
C
PHE
613
C
PHE
23
5
1
5
SIGNALING PROTEIN/SIGNALING PROTEIN
SH3 domain, PROTEIN-PROTEIN COMPLEX, Grb2, Vav, SIGNALING PROTEIN-SIGNALING PROTEIN COMPLEX
C
ILE
606
C
ILE
16
1
C
PRO
607
C
PRO
17
-1.13
GRB2_HUMAN
UNP
1
P62993
VAV_MOUSE
UNP
2
P27870
159
217
1GCQ
159
217
P62993
A
1
3
61
159
217
1GCQ
159
217
P62993
B
1
3
61
595
660
1GCQ
595
660
P27870
C
2
5
70
1
cloning artifact
GLY
157
1GCQ
A
P62993
UNP
1
1
cloning artifact
SER
158
1GCQ
A
P62993
UNP
2
2
cloning artifact
GLY
157
1GCQ
B
P62993
UNP
1
2
cloning artifact
SER
158
1GCQ
B
P62993
UNP
2
3
cloning artifact
GLY
591
1GCQ
C
P27870
UNP
1
3
cloning artifact
SER
592
1GCQ
C
P27870
UNP
2
3
cloning artifact
HIS
593
1GCQ
C
P27870
UNP
3
3
cloning artifact
MET
594
1GCQ
C
P27870
UNP
4
5
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
201
A
GLN
45
A
PRO
206
A
PRO
50
A
TRP
193
A
TRP
37
A
CYS
198
A
CYS
42
A
PHE
182
A
PHE
26
A
ASP
187
A
ASP
31
A
THR
159
A
THR
3
A
ALA
163
A
ALA
7
A
VAL
210
A
VAL
54
A
VAL
213
A
VAL
57
B
GLN
201
B
GLN
45
B
PRO
206
B
PRO
50
B
TRP
193
B
TRP
37
B
CYS
198
B
CYS
42
B
PHE
182
B
PHE
26
B
ASP
187
B
ASP
31
B
TYR
160
B
TYR
4
B
ALA
163
B
ALA
7
B
VAL
210
B
VAL
54
B
PRO
212
B
PRO
56
C
VAL
647
C
VAL
57
C
PRO
651
C
PRO
61
C
TRP
636
C
TRP
46
C
ASN
641
C
ASN
51
C
ILE
624
C
ILE
34
C
LYS
629
C
LYS
39
C
LYS
596
C
LYS
6
C
VAL
599
C
VAL
9
C
VAL
655
C
VAL
65
C
PRO
657
C
PRO
67
BINDING SITE FOR RESIDUE MRD A 218
A
MRD
218
Software
7
A
ALA
197
A
ALA
41
7
1_555
A
CYS
198
A
CYS
42
7
1_555
A
HIS
199
A
HIS
43
7
1_555
A
GLY
200
A
GLY
44
7
1_555
A
HOH
227
E
HOH
7
1_555
C
HOH
56
G
HOH
7
6_555
C
ILE
624
C
ILE
34
7
6_555
20
C 2 2 21