1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Shimba, N. Kariya, E. Tate, S. Kaji, H. Kainosho, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N S N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 R C N 292 N O N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N doub Y 234 N sing Y 235 N sing N 236 N sing Y 237 N doub N 238 N sing Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing NE J.STRUCT.FUNCT.GENOM. 1345-711X 1 26 42 10.1023/A:1011380315619 12836678 Structural comparison between wild-type and P25S human cystatin A by NMR spectroscopy. Does this mutation affect the a-helix conformation ? 2000 10.2210/pdb1gd4/pdb pdb_00001gd4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 10992.390 CYSTATIN A M65L,P25S 1 man polymer no no MIPGGLSEAKPATPEIQEIVDKVKSQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYLHLKVFKSLPGQNEDL VLTGYQVDKNKDDELTGF MIPGGLSEAKPATPEIQEIVDKVKSQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYLHLKVFKSLPGQNEDL VLTGYQVDKNKDDELTGF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2001-09-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-10 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1CYU contains cystatin A (M65L) and 15 Structures. 1CYV contains cystatin A (M65L) and Minimized Average Structure. 1GD3 contains cystatin A (M65L). RCSB Y PDBJ 2000-09-08 REL REL 1 3D_13C-separated_NOESY 3D_15N-separated_NOESY 2D NOESY 0 4.0 ambient 310 K distance geometry, simulated annealing 1.4mM P25S cystatin A U-15N,13C; 10mM Acetate buffer ; 95% H2O, 5% D2O 95% H2O/5% D2O 1.4mM P25S cystatin A U-15N; 10mM Acetate buffer ; 90% H2O 10% D2O 95% H2O/5% D2O 1.4mM P25S cystatin A; 10mM Acetate buffer ; 98% D2O 98% D2O structure solution X-PLOR 3.85 refinement X-PLOR 3.85 800 Bruker DRX MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A PRO 3 n 3 PRO 3 A GLY 4 n 4 GLY 4 A GLY 5 n 5 GLY 5 A LEU 6 n 6 LEU 6 A SER 7 n 7 SER 7 A GLU 8 n 8 GLU 8 A ALA 9 n 9 ALA 9 A LYS 10 n 10 LYS 10 A PRO 11 n 11 PRO 11 A ALA 12 n 12 ALA 12 A THR 13 n 13 THR 13 A PRO 14 n 14 PRO 14 A GLU 15 n 15 GLU 15 A ILE 16 n 16 ILE 16 A GLN 17 n 17 GLN 17 A GLU 18 n 18 GLU 18 A ILE 19 n 19 ILE 19 A VAL 20 n 20 VAL 20 A ASP 21 n 21 ASP 21 A LYS 22 n 22 LYS 22 A VAL 23 n 23 VAL 23 A LYS 24 n 24 LYS 24 A SER 25 n 25 SER 25 A GLN 26 n 26 GLN 26 A LEU 27 n 27 LEU 27 A GLU 28 n 28 GLU 28 A GLU 29 n 29 GLU 29 A LYS 30 n 30 LYS 30 A THR 31 n 31 THR 31 A ASN 32 n 32 ASN 32 A GLU 33 n 33 GLU 33 A THR 34 n 34 THR 34 A TYR 35 n 35 TYR 35 A GLY 36 n 36 GLY 36 A LYS 37 n 37 LYS 37 A LEU 38 n 38 LEU 38 A GLU 39 n 39 GLU 39 A ALA 40 n 40 ALA 40 A VAL 41 n 41 VAL 41 A GLN 42 n 42 GLN 42 A TYR 43 n 43 TYR 43 A LYS 44 n 44 LYS 44 A THR 45 n 45 THR 45 A GLN 46 n 46 GLN 46 A VAL 47 n 47 VAL 47 A VAL 48 n 48 VAL 48 A ALA 49 n 49 ALA 49 A GLY 50 n 50 GLY 50 A THR 51 n 51 THR 51 A ASN 52 n 52 ASN 52 A TYR 53 n 53 TYR 53 A TYR 54 n 54 TYR 54 A ILE 55 n 55 ILE 55 A LYS 56 n 56 LYS 56 A VAL 57 n 57 VAL 57 A ARG 58 n 58 ARG 58 A ALA 59 n 59 ALA 59 A GLY 60 n 60 GLY 60 A ASP 61 n 61 ASP 61 A ASN 62 n 62 ASN 62 A LYS 63 n 63 LYS 63 A TYR 64 n 64 TYR 64 A LEU 65 n 65 LEU 65 A HIS 66 n 66 HIS 66 A LEU 67 n 67 LEU 67 A LYS 68 n 68 LYS 68 A VAL 69 n 69 VAL 69 A PHE 70 n 70 PHE 70 A LYS 71 n 71 LYS 71 A SER 72 n 72 SER 72 A LEU 73 n 73 LEU 73 A PRO 74 n 74 PRO 74 A GLY 75 n 75 GLY 75 A GLN 76 n 76 GLN 76 A ASN 77 n 77 ASN 77 A GLU 78 n 78 GLU 78 A ASP 79 n 79 ASP 79 A LEU 80 n 80 LEU 80 A VAL 81 n 81 VAL 81 A LEU 82 n 82 LEU 82 A THR 83 n 83 THR 83 A GLY 84 n 84 GLY 84 A TYR 85 n 85 TYR 85 A GLN 86 n 86 GLN 86 A VAL 87 n 87 VAL 87 A ASP 88 n 88 ASP 88 A LYS 89 n 89 LYS 89 A ASN 90 n 90 ASN 90 A LYS 91 n 91 LYS 91 A ASP 92 n 92 ASP 92 A ASP 93 n 93 ASP 93 A GLU 94 n 94 GLU 94 A LEU 95 n 95 LEU 95 A THR 96 n 96 THR 96 A GLY 97 n 97 GLY 97 A PHE 98 n 98 PHE 98 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 71 A N LYS 71 A O THR 51 A O THR 51 A N ARG 58 A N ARG 58 A O GLU 39 A O GLU 39 A N LYS 71 A N LYS 71 A O THR 51 A O THR 51 A O ASN 52 A O ASN 52 A N GLN 46 A N GLN 46 1 A A O H VAL LEU 23 27 1.51 1 A ARG 58 0.198 SIDE CHAIN 1 A PRO 3 -73.43 -166.00 1 A GLU 8 -134.93 -139.87 1 A ALA 9 166.28 66.86 1 A THR 13 -125.09 -149.04 1 A GLU 33 -78.21 -143.81 1 A THR 34 -170.65 -47.36 1 A TYR 35 45.04 -171.26 1 A VAL 48 -141.75 -123.35 1 A ASP 61 -152.69 21.52 1 A ASN 62 -172.43 33.27 1 A SER 72 -104.74 -119.52 1 A LEU 73 145.88 -49.98 1 A GLN 76 -28.51 -43.53 1 A ASN 77 -29.23 -45.61 1 A GLU 78 -69.62 -73.99 1 A ASP 79 54.73 134.50 1 A LEU 80 30.18 48.46 1 A LEU 82 -60.76 91.30 1 A TYR 85 169.55 177.80 1 A ASP 88 39.98 69.04 1 A ASN 90 -144.95 27.93 1 A LYS 91 -147.05 -34.38 1 A ASP 93 -106.15 51.09 1 A LEU 95 51.11 -116.89 SOLUTION STRUCTURE OF P25S CYSTATIN A 1 N N A THR 13 A THR 13 HELX_P A GLU 29 A GLU 29 1 1 17 PROTEIN BINDING cystatin A, Thiol protease inhibitor, PROTEIN BINDING CYTA_HUMAN UNP 1 1 P01040 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYMHLKVFKSLPGQNEDL VLTGYQVDKNKDDELTGF 1 98 1GD4 1 98 P01040 A 1 1 98 1 PRO engineered mutation SER 25 1GD4 A P01040 UNP 25 25 1 MET engineered mutation LEU 65 1GD4 A P01040 UNP 65 65 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A TYR 64 A TYR 64 A LYS 71 A LYS 71 A THR 51 A THR 51 A ARG 58 A ARG 58 A GLU 39 A GLU 39 A TYR 43 A TYR 43 A TYR 64 A TYR 64 A LYS 71 A LYS 71 A THR 51 A THR 51 A ARG 58 A ARG 58 A GLN 46 A GLN 46 A VAL 47 A VAL 47