0.020300
0.000000
0.000000
0.000000
0.020300
0.000000
0.000000
0.000000
0.011983
0.00000
0.00000
0.00000
Yamada, S.
Park, S.-Y.
Shimizu, H.
Shiro, Y.
Oku, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.260
49.260
83.450
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
FE
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
Y
142
N
N
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
N
158
N
C
N
159
N
C
N
160
N
C
Y
161
N
N
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
S
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
E
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
Y
182
N
sing
N
183
N
sing
Y
184
N
sing
N
185
E
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
1577
1582
10.1107/S090744490001461X
11092924
Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution.
2000
10.2210/pdb1gdv/pdb
pdb_00001gdv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.0
1
CCD
2000-06-20
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.7
1.0
BL44B2
SPring-8
0.7
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
9085.016
CYTOCHROME C6
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
18.015
water
45
nat
water
no
no
ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQ
SEKGW
ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQ
SEKGW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Porphyra
sample
2788
Porphyra yezoensis
1
2.79
55.84
VAPOR DIFFUSION, SITTING DROP
3.5
1.8M ammonium sulfate, 0.1M sodium citrate, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Derived calculations
1
0
2001-04-06
1
1
2008-04-27
1
2
2011-07-13
2
0
2019-10-02
2
1
2023-12-27
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_label_comp_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
RCSB
Y
PDBJ
2000-10-06
REL
HEC
HEME C
HOH
water
HEM
101
2
HEC
HEC
101
A
HOH
1
3
HOH
HOH
102
A
HOH
2
3
HOH
HOH
103
A
HOH
3
3
HOH
HOH
104
A
HOH
4
3
HOH
HOH
105
A
HOH
5
3
HOH
HOH
106
A
HOH
6
3
HOH
HOH
107
A
HOH
7
3
HOH
HOH
108
A
HOH
8
3
HOH
HOH
109
A
HOH
9
3
HOH
HOH
110
A
HOH
10
3
HOH
HOH
111
A
HOH
11
3
HOH
HOH
112
A
HOH
12
3
HOH
HOH
113
A
HOH
13
3
HOH
HOH
114
A
HOH
14
3
HOH
HOH
115
A
HOH
15
3
HOH
HOH
116
A
HOH
16
3
HOH
HOH
117
A
HOH
17
3
HOH
HOH
118
A
HOH
18
3
HOH
HOH
119
A
HOH
19
3
HOH
HOH
120
A
HOH
20
3
HOH
HOH
121
A
HOH
21
3
HOH
HOH
122
A
HOH
22
3
HOH
HOH
123
A
HOH
23
3
HOH
HOH
124
A
HOH
24
3
HOH
HOH
125
A
HOH
25
3
HOH
HOH
126
A
HOH
26
3
HOH
HOH
127
A
HOH
27
3
HOH
HOH
128
A
HOH
28
3
HOH
HOH
129
A
HOH
29
3
HOH
HOH
130
A
HOH
30
3
HOH
HOH
131
A
HOH
31
3
HOH
HOH
132
A
HOH
32
3
HOH
HOH
133
A
HOH
33
3
HOH
HOH
134
A
HOH
34
3
HOH
HOH
135
A
HOH
35
3
HOH
HOH
136
A
HOH
36
3
HOH
HOH
137
A
HOH
37
3
HOH
HOH
138
A
HOH
38
3
HOH
HOH
139
A
HOH
39
3
HOH
HOH
140
A
HOH
40
3
HOH
HOH
141
A
HOH
41
3
HOH
HOH
142
A
HOH
42
3
HOH
HOH
143
A
HOH
43
3
HOH
HOH
144
A
HOH
44
3
HOH
HOH
145
A
HOH
45
3
HOH
HOH
146
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
LEU
3
n
3
LEU
3
A
ASP
4
n
4
ASP
4
A
ASN
5
n
5
ASN
5
A
GLY
6
n
6
GLY
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
VAL
9
n
9
VAL
9
A
PHE
10
n
10
PHE
10
A
SER
11
n
11
SER
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
CYS
14
n
14
CYS
14
A
ALA
15
n
15
ALA
15
A
ALA
16
n
16
ALA
16
A
CYS
17
n
17
CYS
17
A
HIS
18
n
18
HIS
18
A
ALA
19
n
19
ALA
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
ASN
22
n
22
ASN
22
A
ASN
23
n
23
ASN
23
A
ALA
24
n
24
ALA
24
A
ILE
25
n
25
ILE
25
A
MET
26
n
26
MET
26
A
PRO
27
n
27
PRO
27
A
ASP
28
n
28
ASP
28
A
LYS
29
n
29
LYS
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
ASP
34
n
34
ASP
34
A
VAL
35
n
35
VAL
35
A
LEU
36
n
36
LEU
36
A
GLU
37
n
37
GLU
37
A
ALA
38
n
38
ALA
38
A
ASN
39
n
39
ASN
39
A
SER
40
n
40
SER
40
A
MET
41
n
41
MET
41
A
ASN
42
n
42
ASN
42
A
THR
43
n
43
THR
43
A
ILE
44
n
44
ILE
44
A
ASP
45
n
45
ASP
45
A
ALA
46
n
46
ALA
46
A
ILE
47
n
47
ILE
47
A
THR
48
n
48
THR
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
VAL
51
n
51
VAL
51
A
GLN
52
n
52
GLN
52
A
ASN
53
n
53
ASN
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
ASN
56
n
56
ASN
56
A
ALA
57
n
57
ALA
57
A
MET
58
n
58
MET
58
A
PRO
59
n
59
PRO
59
A
ALA
60
n
60
ALA
60
A
PHE
61
n
61
PHE
61
A
GLY
62
n
62
GLY
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
LEU
65
n
65
LEU
65
A
VAL
66
n
66
VAL
66
A
ASP
67
n
67
ASP
67
A
GLU
68
n
68
GLU
68
A
ASP
69
n
69
ASP
69
A
ILE
70
n
70
ILE
70
A
GLU
71
n
71
GLU
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
ASN
75
n
75
ASN
75
A
TYR
76
n
76
TYR
76
A
VAL
77
n
77
VAL
77
A
LEU
78
n
78
LEU
78
A
SER
79
n
79
SER
79
A
GLN
80
n
80
GLN
80
A
SER
81
n
81
SER
81
A
GLU
82
n
82
GLU
82
A
LYS
83
n
83
LYS
83
A
GLY
84
n
84
GLY
84
A
TRP
85
n
85
TRP
85
A
author_defined_assembly
1
monomeric
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NA
HEC
1_555
91.7
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NB
HEC
1_555
89.9
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NB
HEC
1_555
91.2
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
87.3
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
178.7
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
89.6
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
92.2
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
89.2
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
177.9
A
HEC
101
B
NC
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
90.0
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
58
A
SD
MET
58
1_555
177.6
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
58
A
SD
MET
58
1_555
86.0
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
58
A
SD
MET
58
1_555
90.5
A
HEC
101
B
NC
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
58
A
SD
MET
58
1_555
95.0
A
HEC
101
B
ND
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
58
A
SD
MET
58
1_555
87.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LYS
55
-168.87
116.44
1
A
ASN
56
54.13
-119.58
0.2540000
0.1990000
1.57
20.0
672
14083
14083
96.7
RANDOM
1
0.0
Engh & Huber
1.57
20.0
45
722
43
0
634
0.015
1.586
23.4
1.57
20.0
1GDV
105068
14083
0.0
0.0470000
1
9.2
7.5
96.7
0.3470000
1.57
1.65
2054
7.5
95.0
model building
X-PLOR
refinement
X-PLOR
3.851
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
X-PLOR
CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION
1
N
N
2
N
N
3
N
N
A
ALA
1
A
ALA
1
HELX_P
A
CYS
14
A
CYS
14
1
1
14
A
CYS
14
A
CYS
14
HELX_P
A
ALA
19
A
ALA
19
1
2
6
A
GLY
20
A
GLY
20
HELX_P
A
ASN
22
A
ASN
22
5
3
3
A
LYS
32
A
LYS
32
HELX_P
A
ASN
39
A
ASN
39
1
4
8
A
THR
43
A
THR
43
HELX_P
A
GLY
54
A
GLY
54
1
5
12
A
VAL
66
A
VAL
66
HELX_P
A
GLY
84
A
GLY
84
1
6
19
covale
1.832
none
A
CYS
14
A
SG
CYS
14
1_555
A
HEC
101
B
CAB
HEC
1_555
covale
1.829
none
A
CYS
17
A
SG
CYS
17
1_555
A
HEC
101
B
CAC
HEC
1_555
metalc
2.073
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
metalc
2.346
A
MET
58
A
SD
MET
58
1_555
A
HEC
101
B
FE
HEC
1_555
ELECTRON TRANSPORT
Cytochrome c6, Red Alga, ELECTRON TRANSPORT
CYC6_PORYE
UNP
1
1
Q8WKJ8
1
85
1GDV
1
85
Q8WKJ8
A
1
1
85
BINDING SITE FOR RESIDUE HEM A 101
Software
16
A
ASN
13
A
ASN
13
16
1_555
A
CYS
14
A
CYS
14
16
1_555
A
CYS
17
A
CYS
17
16
1_555
A
HIS
18
A
HIS
18
16
1_555
A
ASN
23
A
ASN
23
16
1_555
A
LYS
29
A
LYS
29
16
1_555
A
THR
30
A
THR
30
16
1_555
A
VAL
35
A
VAL
35
16
1_555
A
ASN
39
A
ASN
39
16
1_555
A
MET
41
A
MET
41
16
1_555
A
GLN
50
A
GLN
50
16
1_555
A
ASN
56
A
ASN
56
16
1_555
A
ALA
57
A
ALA
57
16
8_665
A
MET
58
A
MET
58
16
1_555
A
HOH
118
C
HOH
16
1_555
A
HOH
134
C
HOH
16
1_555
96
P 43 21 2