0.017753
0.000000
0.000000
0.000000
0.016258
0.000000
0.000000
0.000000
0.031008
0.00000
0.00000
0.00000
Funahashi, J.
Takano, K.
Yamagata, Y.
Yutani, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
56.33
61.51
32.25
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
21792
21800
10.1074/jbc.M110728200
11927576
Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.
2002
UK
Protein Eng.
PRENE9
0859
0269-2139
12
841
850
10.1093/protein/12.10.841
Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme
1999
10.2210/pdb1gfj/pdb
pdb_00001gfj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2000-02-06
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
BL40B2
SPring-8
1
SYNCHROTRON
SPRING-8 BEAMLINE BL40B2
14736.648
LYSOZYME
3.2.1.17
V74D
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
266
nat
water
no
no
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGADNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGADNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
baker's yeast
Saccharomyces
sample
9606
Homo sapiens
4932
Saccharomyces cerevisiae
PLASMID
PERI8602
1
1.90
35.11
VAPOR DIFFUSION, HANGING DROP
4.5
sodium phosphate, sodium chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
283
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
1
0
2000-12-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2021-11-10
1
5
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1GAY CONTAINS LYSOZYME V2G MUTANT
1GF8 CONTAINS LYSOZYME V2S MUTANT
1GF9 CONTAINS LYSOZYME V2Y MUTANT
1GFA CONTAINS LYSOZYME V2D MUTANT
1GFE CONTAINS LYSOZYME V2N MUTANT
1GFG CONTAINS LYSOZYME V2R MUTANT
1GFH CONTAINS LYSOZYME V74Y MUTANT
1GFK CONTAINS LYSOZYME V74N MUTANT
1GFR CONTAINS LYSOZYME V74R MUTANT
1GFT CONTAINS LYSOZYME V110Y MUTANT
1GFU CONTAINS LYSOZYME V110D MUTANT
1GFV CONTAINS LYSOZYME V110N MUTANT
1INU CONTAINS LYSOZYME V110R MUTANT
RCSB
Y
PDBJ
2000-12-04
REL
NA
SODIUM ION
HOH
water
NA
601
2
NA
NA
601
A
H2O
131
3
HOH
HOH
131
A
H2O
132
3
HOH
HOH
132
A
H2O
133
3
HOH
HOH
133
A
H2O
134
3
HOH
HOH
134
A
H2O
135
3
HOH
HOH
135
A
H2O
136
3
HOH
HOH
136
A
H2O
137
3
HOH
HOH
137
A
H2O
138
3
HOH
HOH
138
A
H2O
139
3
HOH
HOH
139
A
H2O
140
3
HOH
HOH
140
A
H2O
141
3
HOH
HOH
141
A
H2O
142
3
HOH
HOH
142
A
H2O
143
3
HOH
HOH
143
A
H2O
144
3
HOH
HOH
144
A
H2O
145
3
HOH
HOH
145
A
H2O
146
3
HOH
HOH
146
A
H2O
147
3
HOH
HOH
147
A
H2O
148
3
HOH
HOH
148
A
H2O
149
3
HOH
HOH
149
A
H2O
150
3
HOH
HOH
150
A
H2O
151
3
HOH
HOH
151
A
H2O
152
3
HOH
HOH
152
A
H2O
153
3
HOH
HOH
153
A
H2O
154
3
HOH
HOH
154
A
H2O
155
3
HOH
HOH
155
A
H2O
156
3
HOH
HOH
156
A
H2O
157
3
HOH
HOH
157
A
H2O
158
3
HOH
HOH
158
A
H2O
159
3
HOH
HOH
159
A
H2O
160
3
HOH
HOH
160
A
H2O
161
3
HOH
HOH
161
A
H2O
162
3
HOH
HOH
162
A
H2O
163
3
HOH
HOH
163
A
H2O
164
3
HOH
HOH
164
A
H2O
165
3
HOH
HOH
165
A
H2O
166
3
HOH
HOH
166
A
H2O
167
3
HOH
HOH
167
A
H2O
168
3
HOH
HOH
168
A
H2O
169
3
HOH
HOH
169
A
H2O
170
3
HOH
HOH
170
A
H2O
171
3
HOH
HOH
171
A
H2O
172
3
HOH
HOH
172
A
H2O
173
3
HOH
HOH
173
A
H2O
174
3
HOH
HOH
174
A
H2O
175
3
HOH
HOH
175
A
H2O
176
3
HOH
HOH
176
A
H2O
177
3
HOH
HOH
177
A
H2O
178
3
HOH
HOH
178
A
H2O
179
3
HOH
HOH
179
A
H2O
180
3
HOH
HOH
180
A
H2O
181
3
HOH
HOH
181
A
H2O
182
3
HOH
HOH
182
A
H2O
183
3
HOH
HOH
183
A
H2O
184
3
HOH
HOH
184
A
H2O
185
3
HOH
HOH
185
A
H2O
186
3
HOH
HOH
186
A
H2O
187
3
HOH
HOH
187
A
H2O
188
3
HOH
HOH
188
A
H2O
189
3
HOH
HOH
189
A
H2O
190
3
HOH
HOH
190
A
H2O
191
3
HOH
HOH
191
A
H2O
192
3
HOH
HOH
192
A
H2O
193
3
HOH
HOH
193
A
H2O
194
3
HOH
HOH
194
A
H2O
195
3
HOH
HOH
195
A
H2O
196
3
HOH
HOH
196
A
H2O
197
3
HOH
HOH
197
A
H2O
198
3
HOH
HOH
198
A
H2O
199
3
HOH
HOH
199
A
H2O
200
3
HOH
HOH
200
A
H2O
201
3
HOH
HOH
201
A
H2O
202
3
HOH
HOH
202
A
H2O
203
3
HOH
HOH
203
A
H2O
204
3
HOH
HOH
204
A
H2O
205
3
HOH
HOH
205
A
H2O
206
3
HOH
HOH
206
A
H2O
207
3
HOH
HOH
207
A
H2O
208
3
HOH
HOH
208
A
H2O
209
3
HOH
HOH
209
A
H2O
210
3
HOH
HOH
210
A
H2O
211
3
HOH
HOH
211
A
H2O
212
3
HOH
HOH
212
A
H2O
213
3
HOH
HOH
213
A
H2O
214
3
HOH
HOH
214
A
H2O
215
3
HOH
HOH
215
A
H2O
216
3
HOH
HOH
216
A
H2O
217
3
HOH
HOH
217
A
H2O
218
3
HOH
HOH
218
A
H2O
219
3
HOH
HOH
219
A
H2O
220
3
HOH
HOH
220
A
H2O
221
3
HOH
HOH
221
A
H2O
222
3
HOH
HOH
222
A
H2O
223
3
HOH
HOH
223
A
H2O
224
3
HOH
HOH
224
A
H2O
225
3
HOH
HOH
225
A
H2O
226
3
HOH
HOH
226
A
H2O
227
3
HOH
HOH
227
A
H2O
228
3
HOH
HOH
228
A
H2O
229
3
HOH
HOH
229
A
H2O
230
3
HOH
HOH
230
A
H2O
231
3
HOH
HOH
231
A
H2O
232
3
HOH
HOH
232
A
H2O
233
3
HOH
HOH
233
A
H2O
234
3
HOH
HOH
234
A
H2O
235
3
HOH
HOH
235
A
H2O
236
3
HOH
HOH
236
A
H2O
237
3
HOH
HOH
237
A
H2O
238
3
HOH
HOH
238
A
H2O
239
3
HOH
HOH
239
A
H2O
240
3
HOH
HOH
240
A
H2O
241
3
HOH
HOH
241
A
H2O
242
3
HOH
HOH
242
A
H2O
243
3
HOH
HOH
243
A
H2O
244
3
HOH
HOH
244
A
H2O
245
3
HOH
HOH
245
A
H2O
246
3
HOH
HOH
246
A
H2O
247
3
HOH
HOH
247
A
H2O
248
3
HOH
HOH
248
A
H2O
249
3
HOH
HOH
249
A
H2O
250
3
HOH
HOH
250
A
H2O
251
3
HOH
HOH
251
A
H2O
252
3
HOH
HOH
252
A
H2O
253
3
HOH
HOH
253
A
H2O
254
3
HOH
HOH
254
A
H2O
255
3
HOH
HOH
255
A
H2O
256
3
HOH
HOH
256
A
H2O
257
3
HOH
HOH
257
A
H2O
258
3
HOH
HOH
258
A
H2O
259
3
HOH
HOH
259
A
H2O
260
3
HOH
HOH
260
A
H2O
261
3
HOH
HOH
261
A
H2O
262
3
HOH
HOH
262
A
H2O
263
3
HOH
HOH
263
A
H2O
264
3
HOH
HOH
264
A
H2O
265
3
HOH
HOH
265
A
H2O
266
3
HOH
HOH
266
A
H2O
267
3
HOH
HOH
267
A
H2O
268
3
HOH
HOH
268
A
H2O
269
3
HOH
HOH
269
A
H2O
270
3
HOH
HOH
270
A
H2O
271
3
HOH
HOH
271
A
H2O
272
3
HOH
HOH
272
A
H2O
273
3
HOH
HOH
273
A
H2O
274
3
HOH
HOH
274
A
H2O
275
3
HOH
HOH
275
A
H2O
276
3
HOH
HOH
276
A
H2O
277
3
HOH
HOH
277
A
H2O
278
3
HOH
HOH
278
A
H2O
279
3
HOH
HOH
279
A
H2O
280
3
HOH
HOH
280
A
H2O
281
3
HOH
HOH
281
A
H2O
282
3
HOH
HOH
282
A
H2O
283
3
HOH
HOH
283
A
H2O
284
3
HOH
HOH
284
A
H2O
285
3
HOH
HOH
285
A
H2O
286
3
HOH
HOH
286
A
H2O
287
3
HOH
HOH
287
A
H2O
288
3
HOH
HOH
288
A
H2O
289
3
HOH
HOH
289
A
H2O
290
3
HOH
HOH
290
A
H2O
291
3
HOH
HOH
291
A
H2O
292
3
HOH
HOH
292
A
H2O
293
3
HOH
HOH
293
A
H2O
294
3
HOH
HOH
294
A
H2O
295
3
HOH
HOH
295
A
H2O
296
3
HOH
HOH
296
A
H2O
297
3
HOH
HOH
297
A
H2O
298
3
HOH
HOH
298
A
H2O
299
3
HOH
HOH
299
A
H2O
300
3
HOH
HOH
300
A
H2O
301
3
HOH
HOH
301
A
H2O
302
3
HOH
HOH
302
A
H2O
303
3
HOH
HOH
303
A
H2O
304
3
HOH
HOH
304
A
H2O
305
3
HOH
HOH
305
A
H2O
306
3
HOH
HOH
306
A
H2O
307
3
HOH
HOH
307
A
H2O
308
3
HOH
HOH
308
A
H2O
309
3
HOH
HOH
309
A
H2O
310
3
HOH
HOH
310
A
H2O
311
3
HOH
HOH
311
A
H2O
312
3
HOH
HOH
312
A
H2O
313
3
HOH
HOH
313
A
H2O
314
3
HOH
HOH
314
A
H2O
315
3
HOH
HOH
315
A
H2O
316
3
HOH
HOH
316
A
H2O
317
3
HOH
HOH
317
A
H2O
318
3
HOH
HOH
318
A
H2O
319
3
HOH
HOH
319
A
H2O
320
3
HOH
HOH
320
A
H2O
321
3
HOH
HOH
321
A
H2O
322
3
HOH
HOH
322
A
H2O
323
3
HOH
HOH
323
A
H2O
324
3
HOH
HOH
324
A
H2O
325
3
HOH
HOH
325
A
H2O
326
3
HOH
HOH
326
A
H2O
327
3
HOH
HOH
327
A
H2O
328
3
HOH
HOH
328
A
H2O
329
3
HOH
HOH
329
A
H2O
330
3
HOH
HOH
330
A
H2O
331
3
HOH
HOH
331
A
H2O
332
3
HOH
HOH
332
A
H2O
333
3
HOH
HOH
333
A
H2O
334
3
HOH
HOH
334
A
H2O
335
3
HOH
HOH
335
A
H2O
336
3
HOH
HOH
336
A
H2O
337
3
HOH
HOH
337
A
H2O
338
3
HOH
HOH
338
A
H2O
339
3
HOH
HOH
339
A
H2O
340
3
HOH
HOH
340
A
H2O
341
3
HOH
HOH
341
A
H2O
342
3
HOH
HOH
342
A
H2O
343
3
HOH
HOH
343
A
H2O
344
3
HOH
HOH
344
A
H2O
345
3
HOH
HOH
345
A
H2O
346
3
HOH
HOH
346
A
H2O
347
3
HOH
HOH
347
A
H2O
348
3
HOH
HOH
348
A
H2O
349
3
HOH
HOH
349
A
H2O
350
3
HOH
HOH
350
A
H2O
351
3
HOH
HOH
351
A
H2O
352
3
HOH
HOH
352
A
H2O
353
3
HOH
HOH
353
A
H2O
354
3
HOH
HOH
354
A
H2O
355
3
HOH
HOH
355
A
H2O
356
3
HOH
HOH
356
A
H2O
357
3
HOH
HOH
357
A
H2O
358
3
HOH
HOH
358
A
H2O
359
3
HOH
HOH
359
A
H2O
360
3
HOH
HOH
360
A
H2O
361
3
HOH
HOH
361
A
H2O
362
3
HOH
HOH
362
A
H2O
363
3
HOH
HOH
363
A
H2O
364
3
HOH
HOH
364
A
H2O
365
3
HOH
HOH
365
A
H2O
366
3
HOH
HOH
366
A
H2O
367
3
HOH
HOH
367
A
H2O
368
3
HOH
HOH
368
A
H2O
369
3
HOH
HOH
369
A
H2O
370
3
HOH
HOH
370
A
H2O
371
3
HOH
HOH
371
A
H2O
372
3
HOH
HOH
372
A
H2O
373
3
HOH
HOH
373
A
H2O
374
3
HOH
HOH
374
A
H2O
375
3
HOH
HOH
375
A
H2O
376
3
HOH
HOH
376
A
H2O
377
3
HOH
HOH
377
A
H2O
378
3
HOH
HOH
378
A
H2O
379
3
HOH
HOH
379
A
H2O
380
3
HOH
HOH
380
A
H2O
381
3
HOH
HOH
381
A
H2O
382
3
HOH
HOH
382
A
H2O
383
3
HOH
HOH
383
A
H2O
384
3
HOH
HOH
384
A
H2O
385
3
HOH
HOH
385
A
H2O
386
3
HOH
HOH
386
A
H2O
387
3
HOH
HOH
387
A
H2O
388
3
HOH
HOH
388
A
H2O
389
3
HOH
HOH
389
A
H2O
390
3
HOH
HOH
390
A
H2O
391
3
HOH
HOH
391
A
H2O
392
3
HOH
HOH
392
A
H2O
393
3
HOH
HOH
393
A
H2O
394
3
HOH
HOH
394
A
H2O
395
3
HOH
HOH
395
A
H2O
396
3
HOH
HOH
396
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
MET
29
n
29
MET
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ARG
62
n
62
ARG
62
A
TYR
63
n
63
TYR
63
A
TRP
64
n
64
TRP
64
A
CYS
65
n
65
CYS
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
ASP
74
n
74
ASP
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
CYS
77
n
77
CYS
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
CYS
81
n
81
CYS
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
ASP
102
n
102
ASP
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
TRP
109
n
109
TRP
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
TRP
112
n
112
TRP
112
A
ARG
113
n
113
ARG
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
CYS
116
n
116
CYS
116
A
GLN
117
n
117
GLN
117
A
ASN
118
n
118
ASN
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
VAL
130
n
130
VAL
130
A
author_defined_assembly
1
monomeric
A
SER
61
A
O
SER
61
1_554
A
NA
601
B
NA
NA
1_555
A
CYS
65
A
O
CYS
65
1_554
87.0
A
SER
61
A
O
SER
61
1_554
A
NA
601
B
NA
NA
1_555
A
ASP
74
A
O
ASP
74
1_554
102.7
A
CYS
65
A
O
CYS
65
1_554
A
NA
601
B
NA
NA
1_555
A
ASP
74
A
O
ASP
74
1_554
106.7
A
SER
61
A
O
SER
61
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
158
C
O
HOH
1_554
86.9
A
CYS
65
A
O
CYS
65
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
158
C
O
HOH
1_554
87.7
A
ASP
74
A
O
ASP
74
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
158
C
O
HOH
1_554
162.9
A
SER
61
A
O
SER
61
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
161
C
O
HOH
1_554
151.7
A
CYS
65
A
O
CYS
65
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
161
C
O
HOH
1_554
111.9
A
ASP
74
A
O
ASP
74
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
161
C
O
HOH
1_554
92.1
A
HOH
158
C
O
HOH
1_554
A
NA
601
B
NA
NA
1_555
A
HOH
161
C
O
HOH
1_554
73.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
46
A
N
ASN
46
A
O
SER
51
A
O
SER
51
A
N
TYR
54
A
N
TYR
54
A
O
ILE
59
A
O
ILE
59
0.172
0.172
1.8
8.0
10386
96.7
1
1.8
8.0
266
1297
1
0
1030
1.8
1GFJ
34606
10593
0.039
1
96.9
model building
X-PLOR
refinement
X-PLOR
3.1
phasing
X-PLOR
CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS
1
N
N
2
N
N
3
N
N
A
GLU
4
A
GLU
4
HELX_P
A
LEU
15
A
LEU
15
1
1
12
A
SER
24
A
SER
24
HELX_P
A
GLY
37
A
GLY
37
1
2
14
A
CYS
81
A
CYS
81
HELX_P
A
GLN
86
A
GLN
86
5
3
6
A
ILE
89
A
ILE
89
HELX_P
A
ARG
101
A
ARG
101
1
4
13
A
GLN
104
A
GLN
104
HELX_P
A
ALA
108
A
ALA
108
5
5
5
A
TRP
109
A
TRP
109
HELX_P
A
CYS
116
A
CYS
116
1
6
8
A
VAL
121
A
VAL
121
HELX_P
A
VAL
125
A
VAL
125
5
7
5
disulf
2.033
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
128
A
SG
CYS
128
1_555
disulf
2.022
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.031
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.026
A
CYS
77
A
SG
CYS
77
1_555
A
CYS
95
A
SG
CYS
95
1_555
metalc
2.301
A
SER
61
A
O
SER
61
1_554
A
NA
601
B
NA
NA
1_555
metalc
2.308
A
CYS
65
A
O
CYS
65
1_554
A
NA
601
B
NA
NA
1_555
metalc
2.154
A
ASP
74
A
O
ASP
74
1_554
A
NA
601
B
NA
NA
1_555
metalc
2.560
A
HOH
158
C
O
HOH
1_554
A
NA
601
B
NA
NA
1_555
metalc
2.181
A
HOH
161
C
O
HOH
1_554
A
NA
601
B
NA
NA
1_555
HYDROLASE
surface, hydrophilic, stability, HYDROLASE
LYSC_HUMAN
UNP
1
19
P61626
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
19
148
1GFJ
1
130
P61626
A
1
1
130
1
VAL
engineered mutation
ASP
74
1GFJ
A
P61626
UNP
92
74
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ASN
46
A
ASN
46
A
SER
51
A
SER
51
A
TYR
54
A
TYR
54
A
ILE
59
A
ILE
59
A
ASN
60
A
ASN
60
BINDING SITE FOR RESIDUE NA A 601
A
NA
601
Software
6
A
SER
61
A
SER
61
6
1_554
A
CYS
65
A
CYS
65
6
1_554
A
ALA
73
A
ALA
73
6
1_554
A
ASP
74
A
ASP
74
6
1_554
A
HOH
158
C
HOH
6
1_554
A
HOH
161
C
HOH
6
1_554
19
P 21 21 21