0.008463
0.000000
0.000000
0.000000
0.008463
0.000000
0.000000
0.000000
0.008463
0.00000
0.00000
0.00000
Wagner, T.
Kretsinger, R.H.
Bauerle, R.
Tolbert, W.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
118.167
118.167
118.167
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
P
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
301
233
238
10.1006/jmbi.2000.3956
10926505
3-Deoxy-D-manno-octulosonate-8-phosphate synthase from Escherichia coli. Model of binding of phosphoenolpyruvate and D-arabinose-5-phosphate.
2000
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
9476
9484
10.1074/jbc.275.13.9476
Structure and mechanism of 3-deoxy-D-manno-octulosonate-8-phosphate synthase
2000
US
Proteins
PSFGEY
0867
0887-3585
24
407
408
10.1002/(SICI)1097-0134(199603)24:3<407::AID-PROT16>3.3.CO;2-S
Crystallization and preliminary crystallographic studies of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Escherichia coli
1996
10.2210/pdb1gg0/pdb
pdb_00001gg0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.0
1
AREA DETECTOR
1996-03-13
CUSTOM-MADE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
OTHER
30870.676
3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE
4.1.2.16
1
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
no
no
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PLASMID
PCAM5
1
2.23
44.74
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 1500, 3-(N-morpholino)propanesulfonic acid, dithioerythitol, d-arabinose-5-phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K
291.0
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2000-10-04
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1D9E contains the same protein in a different unit cell at 2.4 A resolution.
RCSB
Y
RCSB
2000-08-04
REL
PO4
PHOSPHATE ION
PO4
290
2
PO4
PO4
290
A
PO4
291
2
PO4
PO4
291
A
ALA
1
n
1
MET
1
A
ALA
2
n
2
LYS
2
A
GLN
3
n
3
GLN
3
A
LYS
4
n
4
LYS
4
A
VAL
5
n
5
VAL
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
ASP
10
n
10
ASP
10
A
ALA
11
n
11
ILE
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ASN
15
n
15
ASN
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
PRO
18
n
18
PRO
18
A
PHE
19
n
19
PHE
19
A
VAL
20
n
20
VAL
20
A
LEU
21
n
21
LEU
21
A
PHE
22
n
22
PHE
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
MET
25
n
25
MET
25
A
ASN
26
n
26
ASN
26
A
VAL
27
n
27
VAL
27
A
LEU
28
n
28
LEU
28
A
GLU
29
n
29
GLU
29
A
SER
30
n
30
SER
30
A
ARG
31
n
31
ARG
31
A
ASP
32
n
32
ASP
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
MET
35
n
35
MET
35
A
ALA
36
n
36
ARG
36
A
ILE
37
n
37
ILE
37
A
CYS
38
n
38
CYS
38
A
GLU
39
n
39
GLU
39
A
HIS
40
n
40
HIS
40
A
TYR
41
n
41
TYR
41
A
VAL
42
n
42
VAL
42
A
THR
43
n
43
THR
43
A
VAL
44
n
44
VAL
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
GLN
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
PRO
51
n
51
PRO
51
A
TYR
52
n
52
TYR
52
A
VAL
53
n
53
VAL
53
A
PHE
54
n
54
PHE
54
A
LYS
55
n
55
LYS
55
A
ALA
56
n
56
ALA
56
A
SER
57
n
57
SER
57
A
PHE
58
n
58
PHE
58
A
ASP
59
n
59
ASP
59
A
LYS
60
n
60
LYS
60
A
ALA
61
n
61
ALA
61
A
ASN
62
n
62
ASN
62
A
ARG
63
n
63
ARG
63
A
SER
64
n
64
SER
64
A
ALA
65
n
65
SER
65
A
ALA
66
n
66
ILE
66
A
ALA
67
n
67
HIS
67
A
ALA
68
n
68
SER
68
A
ALA
69
n
69
TYR
69
A
ARG
70
n
70
ARG
70
A
GLY
71
n
71
GLY
71
A
PRO
72
n
72
PRO
72
A
GLY
73
n
73
GLY
73
A
LEU
74
n
74
LEU
74
A
ALA
75
n
75
GLU
75
A
ALA
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
MET
78
n
78
MET
78
A
ALA
79
n
79
LYS
79
A
ILE
80
n
80
ILE
80
A
PHE
81
n
81
PHE
81
A
GLN
82
n
82
GLN
82
A
GLU
83
n
83
GLU
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
GLN
86
n
86
GLN
86
A
THR
87
n
87
THR
87
A
PHE
88
n
88
PHE
88
A
GLY
89
n
89
GLY
89
A
VAL
90
n
90
VAL
90
A
ALA
91
n
91
LYS
91
A
ILE
92
n
92
ILE
92
A
ILE
93
n
93
ILE
93
A
THR
94
n
94
THR
94
A
ASP
95
n
95
ASP
95
A
VAL
96
n
96
VAL
96
A
HIS
97
n
97
HIS
97
A
GLU
98
n
98
GLU
98
A
PRO
99
n
99
PRO
99
A
SER
100
n
100
SER
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
GLN
103
n
103
GLN
103
A
PRO
104
n
104
PRO
104
A
VAL
105
n
105
VAL
105
A
ALA
106
n
106
ALA
106
A
ASP
107
n
107
ASP
107
A
VAL
108
n
108
VAL
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
ILE
112
n
112
ILE
112
A
GLN
113
n
113
GLN
113
A
LEU
114
n
114
LEU
114
A
PRO
115
n
115
PRO
115
A
ALA
116
n
116
ALA
116
A
PHE
117
n
117
PHE
117
A
LEU
118
n
118
LEU
118
A
ALA
119
n
119
ALA
119
A
ARG
120
n
120
ARG
120
A
GLN
121
n
121
GLN
121
A
THR
122
n
122
THR
122
A
ASP
123
n
123
ASP
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
GLU
126
A
ALA
127
n
127
ALA
127
A
MET
128
n
128
MET
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
LYS
130
A
THR
131
n
131
THR
131
A
GLY
132
n
132
GLY
132
A
ALA
133
n
133
ALA
133
A
VAL
134
n
134
VAL
134
A
ILE
135
n
135
ILE
135
A
ASN
136
n
136
ASN
136
A
VAL
137
n
137
VAL
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
PRO
140
n
140
PRO
140
A
GLN
141
n
141
GLN
141
A
PHE
142
n
142
PHE
142
A
VAL
143
n
143
VAL
143
A
SER
144
n
144
SER
144
A
PRO
145
n
145
PRO
145
A
GLY
146
n
146
GLY
146
A
GLN
147
n
147
GLN
147
A
MET
148
n
148
MET
148
A
GLY
149
n
149
GLY
149
A
ASN
150
n
150
ASN
150
A
ILE
151
n
151
ILE
151
A
VAL
152
n
152
VAL
152
A
ASP
153
n
153
ASP
153
A
LYS
154
n
154
LYS
154
A
PHE
155
n
155
PHE
155
A
ALA
156
n
156
LYS
156
A
GLU
157
n
157
GLU
157
A
GLY
158
n
158
GLY
158
A
GLY
159
n
159
GLY
159
A
ASN
160
n
160
ASN
160
A
GLU
161
n
161
GLU
161
A
LYS
162
n
162
LYS
162
A
VAL
163
n
163
VAL
163
A
ILE
164
n
164
ILE
164
A
LEU
165
n
165
LEU
165
A
CYS
166
n
166
CYS
166
A
ASP
167
n
167
ASP
167
A
ARG
168
n
168
ARG
168
A
GLY
169
n
169
GLY
169
A
ALA
170
n
170
ALA
170
A
ASN
171
n
171
ASN
171
A
PHE
172
n
172
PHE
172
A
GLY
173
n
173
GLY
173
A
TYR
174
n
174
TYR
174
A
ASP
175
n
175
ASP
175
A
ASN
176
n
176
ASN
176
A
LEU
177
n
177
LEU
177
A
VAL
178
n
178
VAL
178
A
VAL
179
n
179
VAL
179
A
ASP
180
n
180
ASP
180
A
MET
181
n
181
MET
181
A
LEU
182
n
182
LEU
182
A
GLY
183
n
183
GLY
183
A
PHE
184
n
184
PHE
184
A
SER
185
n
185
SER
185
A
ILE
186
n
186
ILE
186
A
MET
187
n
187
MET
187
A
LYS
188
n
188
LYS
188
A
ALA
189
n
189
LYS
189
A
VAL
190
n
190
VAL
190
A
SER
191
n
191
SER
191
A
GLY
192
n
192
GLY
192
A
ASN
193
n
193
ASN
193
A
SER
194
n
194
SER
194
A
PRO
195
n
195
PRO
195
A
VAL
196
n
196
VAL
196
A
ILE
197
n
197
ILE
197
A
PHE
198
n
198
PHE
198
A
ASP
199
n
199
ASP
199
A
VAL
200
n
200
VAL
200
A
THR
201
n
201
THR
201
A
HIS
202
n
202
HIS
202
A
ALA
203
n
203
ALA
203
A
LEU
204
n
204
LEU
204
A
GLN
205
n
205
GLN
205
A
CYS
206
n
206
CYS
206
A
ALA
207
n
207
ARG
207
A
n
208
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
n
213
213
A
n
214
214
A
n
215
215
A
n
216
216
A
ALA
217
n
217
ARG
217
A
ARG
218
n
218
ARG
218
A
ALA
219
n
219
ALA
219
A
GLN
220
n
220
GLN
220
A
VAL
221
n
221
VAL
221
A
ALA
222
n
222
ALA
222
A
GLU
223
n
223
GLU
223
A
LEU
224
n
224
LEU
224
A
ALA
225
n
225
ALA
225
A
ARG
226
n
226
ARG
226
A
ALA
227
n
227
ALA
227
A
GLY
228
n
228
GLY
228
A
MET
229
n
229
MET
229
A
ALA
230
n
230
ALA
230
A
VAL
231
n
231
VAL
231
A
GLY
232
n
232
GLY
232
A
LEU
233
n
233
LEU
233
A
ALA
234
n
234
ALA
234
A
GLY
235
n
235
GLY
235
A
LEU
236
n
236
LEU
236
A
PHE
237
n
237
PHE
237
A
ILE
238
n
238
ILE
238
A
GLU
239
n
239
GLU
239
A
ALA
240
n
240
ALA
240
A
HIS
241
n
241
HIS
241
A
PRO
242
n
242
PRO
242
A
ASP
243
n
243
ASP
243
A
PRO
244
n
244
PRO
244
A
GLU
245
n
245
GLU
245
A
HIS
246
n
246
HIS
246
A
ALA
247
n
247
ALA
247
A
ALA
248
n
248
LYS
248
A
CYS
249
n
249
CYS
249
A
ASP
250
n
250
ASP
250
A
ALA
251
n
251
GLY
251
A
PRO
252
n
252
PRO
252
A
ALA
253
n
253
SER
253
A
ALA
254
n
254
ALA
254
A
LEU
255
n
255
LEU
255
A
PRO
256
n
256
PRO
256
A
LEU
257
n
257
LEU
257
A
ALA
258
n
258
ALA
258
A
LYS
259
n
259
LYS
259
A
LEU
260
n
260
LEU
260
A
GLU
261
n
261
GLU
261
A
PRO
262
n
262
PRO
262
A
PHE
263
n
263
PHE
263
A
LEU
264
n
264
LEU
264
A
LYS
265
n
265
LYS
265
A
GLN
266
n
266
GLN
266
A
MET
267
n
267
MET
267
A
ALA
268
n
268
LYS
268
A
ALA
269
n
269
ALA
269
A
ILE
270
n
270
ILE
270
A
ASP
271
n
271
ASP
271
A
ASP
272
n
272
ASP
272
A
LEU
273
n
273
LEU
273
A
VAL
274
n
274
VAL
274
A
LYS
275
n
275
LYS
275
A
GLY
276
n
276
GLY
276
A
PHE
277
n
277
PHE
277
A
GLU
278
n
278
GLU
278
A
GLU
279
n
279
GLU
279
A
LEU
280
n
280
LEU
280
A
ASP
281
n
281
ASP
281
A
ALA
282
n
282
THR
282
A
SER
283
n
283
SER
283
A
LYS
284
n
284
LYS
284
A
author_and_software_defined_assembly
PQS
4
tetrameric
software_defined_assembly
PISA
2
dimeric
3810
-40
20650
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-x+1,-y,z
crystal symmetry operation
118.1670000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_656
-x+1,y,-z+1
crystal symmetry operation
118.1670000000
0.0000000000
118.1670000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
x,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
118.1670000000
A
N
ILE
8
A
N
ILE
8
A
O
ILE
11
A
O
ILE
11
A
N
LEU
236
A
N
LEU
236
A
O
VAL
20
A
O
VAL
20
A
O
LEU
21
A
O
LEU
21
A
N
VAL
53
A
N
VAL
53
A
N
PHE
54
A
N
PHE
54
A
O
LYS
91
A
O
LYS
91
A
O
ILE
92
A
O
ILE
92
A
N
VAL
111
A
N
VAL
111
A
N
ILE
112
A
N
ILE
112
A
O
VAL
134
A
O
VAL
134
A
O
ILE
135
A
O
ILE
135
A
N
ILE
164
A
N
ILE
164
A
O
LEU
165
A
O
LEU
165
A
N
ILE
197
A
N
ILE
197
A
N
PHE
198
A
N
PHE
198
A
O
GLY
235
A
O
GLY
235
A
O
GLU
239
A
O
GLU
239
A
N
LEU
255
A
N
LEU
255
1
A
CG
MET
1
A
CG
MET
1
1
Y
1
A
SD
MET
1
A
SD
MET
1
1
Y
1
A
CE
MET
1
A
CE
MET
1
1
Y
1
A
CG
LYS
2
A
CG
LYS
2
1
Y
1
A
CD
LYS
2
A
CD
LYS
2
1
Y
1
A
CE
LYS
2
A
CE
LYS
2
1
Y
1
A
NZ
LYS
2
A
NZ
LYS
2
1
Y
1
A
CG1
ILE
11
A
CG1
ILE
11
1
Y
1
A
CG2
ILE
11
A
CG2
ILE
11
1
Y
1
A
CD1
ILE
11
A
CD1
ILE
11
1
Y
1
A
CG
ARG
36
A
CG
ARG
36
1
Y
1
A
CD
ARG
36
A
CD
ARG
36
1
Y
1
A
NE
ARG
36
A
NE
ARG
36
1
Y
1
A
CZ
ARG
36
A
CZ
ARG
36
1
Y
1
A
NH1
ARG
36
A
NH1
ARG
36
1
Y
1
A
NH2
ARG
36
A
NH2
ARG
36
1
Y
1
A
CG
GLN
46
A
CG
GLN
46
1
Y
1
A
CD
GLN
46
A
CD
GLN
46
1
Y
1
A
OE1
GLN
46
A
OE1
GLN
46
1
Y
1
A
NE2
GLN
46
A
NE2
GLN
46
1
Y
1
A
OG
SER
65
A
OG
SER
65
1
Y
1
A
CG1
ILE
66
A
CG1
ILE
66
1
Y
1
A
CG2
ILE
66
A
CG2
ILE
66
1
Y
1
A
CD1
ILE
66
A
CD1
ILE
66
1
Y
1
A
CG
HIS
67
A
CG
HIS
67
1
Y
1
A
ND1
HIS
67
A
ND1
HIS
67
1
Y
1
A
CD2
HIS
67
A
CD2
HIS
67
1
Y
1
A
CE1
HIS
67
A
CE1
HIS
67
1
Y
1
A
NE2
HIS
67
A
NE2
HIS
67
1
Y
1
A
OG
SER
68
A
OG
SER
68
1
Y
1
A
CG
TYR
69
A
CG
TYR
69
1
Y
1
A
CD1
TYR
69
A
CD1
TYR
69
1
Y
1
A
CD2
TYR
69
A
CD2
TYR
69
1
Y
1
A
CE1
TYR
69
A
CE1
TYR
69
1
Y
1
A
CE2
TYR
69
A
CE2
TYR
69
1
Y
1
A
CZ
TYR
69
A
CZ
TYR
69
1
Y
1
A
OH
TYR
69
A
OH
TYR
69
1
Y
1
A
CG
GLU
75
A
CG
GLU
75
1
Y
1
A
CD
GLU
75
A
CD
GLU
75
1
Y
1
A
OE1
GLU
75
A
OE1
GLU
75
1
Y
1
A
OE2
GLU
75
A
OE2
GLU
75
1
Y
1
A
CG
GLU
76
A
CG
GLU
76
1
Y
1
A
CD
GLU
76
A
CD
GLU
76
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
76
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
76
1
Y
1
A
CG
LYS
79
A
CG
LYS
79
1
Y
1
A
CD
LYS
79
A
CD
LYS
79
1
Y
1
A
CE
LYS
79
A
CE
LYS
79
1
Y
1
A
NZ
LYS
79
A
NZ
LYS
79
1
Y
1
A
CG
LYS
91
A
CG
LYS
91
1
Y
1
A
CD
LYS
91
A
CD
LYS
91
1
Y
1
A
CE
LYS
91
A
CE
LYS
91
1
Y
1
A
NZ
LYS
91
A
NZ
LYS
91
1
Y
1
A
CG
GLU
126
A
CG
GLU
126
1
Y
1
A
CD
GLU
126
A
CD
GLU
126
1
Y
1
A
OE1
GLU
126
A
OE1
GLU
126
1
Y
1
A
OE2
GLU
126
A
OE2
GLU
126
1
Y
1
A
CG
LYS
130
A
CG
LYS
130
1
Y
1
A
CD
LYS
130
A
CD
LYS
130
1
Y
1
A
CE
LYS
130
A
CE
LYS
130
1
Y
1
A
NZ
LYS
130
A
NZ
LYS
130
1
Y
1
A
CG
LYS
156
A
CG
LYS
156
1
Y
1
A
CD
LYS
156
A
CD
LYS
156
1
Y
1
A
CE
LYS
156
A
CE
LYS
156
1
Y
1
A
NZ
LYS
156
A
NZ
LYS
156
1
Y
1
A
CG
LYS
189
A
CG
LYS
189
1
Y
1
A
CD
LYS
189
A
CD
LYS
189
1
Y
1
A
CE
LYS
189
A
CE
LYS
189
1
Y
1
A
NZ
LYS
189
A
NZ
LYS
189
1
Y
1
A
CG
ARG
207
A
CG
ARG
207
1
Y
1
A
CD
ARG
207
A
CD
ARG
207
1
Y
1
A
NE
ARG
207
A
NE
ARG
207
1
Y
1
A
CZ
ARG
207
A
CZ
ARG
207
1
Y
1
A
NH1
ARG
207
A
NH1
ARG
207
1
Y
1
A
NH2
ARG
207
A
NH2
ARG
207
1
Y
1
A
CG
ARG
217
A
CG
ARG
217
1
Y
1
A
CD
ARG
217
A
CD
ARG
217
1
Y
1
A
NE
ARG
217
A
NE
ARG
217
1
Y
1
A
CZ
ARG
217
A
CZ
ARG
217
1
Y
1
A
NH1
ARG
217
A
NH1
ARG
217
1
Y
1
A
NH2
ARG
217
A
NH2
ARG
217
1
Y
1
A
CG
LYS
248
A
CG
LYS
248
1
Y
1
A
CD
LYS
248
A
CD
LYS
248
1
Y
1
A
CE
LYS
248
A
CE
LYS
248
1
Y
1
A
NZ
LYS
248
A
NZ
LYS
248
1
Y
1
A
OG
SER
253
A
OG
SER
253
1
Y
1
A
CG
LYS
268
A
CG
LYS
268
1
Y
1
A
CD
LYS
268
A
CD
LYS
268
1
Y
1
A
CE
LYS
268
A
CE
LYS
268
1
Y
1
A
NZ
LYS
268
A
NZ
LYS
268
1
Y
1
A
OG1
THR
282
A
OG1
THR
282
1
Y
1
A
CG2
THR
282
A
CG2
THR
282
1
Y
1
A
ASP
208
A
ASP
208
1
Y
1
A
PRO
209
A
PRO
209
1
Y
1
A
PHE
210
A
PHE
210
1
Y
1
A
GLY
211
A
GLY
211
1
Y
1
A
ALA
212
A
ALA
212
1
Y
1
A
ALA
213
A
ALA
213
1
Y
1
A
SER
214
A
SER
214
1
Y
1
A
GLY
215
A
GLY
215
1
Y
1
A
GLY
216
A
GLY
216
1
Y
1
A
A
NH1
CB
ARG
PRO
218
244
2.00
1
A
A
O
OD1
GLY
ASP
149
153
2.14
1
-15.38
2.20
117.20
101.82
A
A
A
CA
C
N
CYS
CYS
ARG
206
206
207
Y
1
-28.46
2.70
111.00
82.54
A
A
A
N
CA
C
ARG
ARG
ARG
207
207
207
N
1
18.59
2.70
111.00
129.59
A
A
A
N
CA
C
ARG
ARG
ARG
217
217
217
N
1
-19.39
2.20
117.20
97.81
A
A
A
CA
C
N
ARG
ARG
ARG
217
217
218
Y
1
11.72
1.60
122.70
134.42
A
A
A
O
C
N
ARG
ARG
ARG
217
217
218
Y
1
21.76
2.50
121.70
143.46
A
A
A
C
N
CA
ARG
ARG
ARG
217
218
218
Y
1
26.23
2.70
111.00
137.23
A
A
A
N
CA
C
ARG
ARG
ARG
218
218
218
N
1
-18.39
2.50
121.70
103.31
A
A
A
C
N
CA
CYS
ASP
ASP
249
250
250
Y
1
A
A
C
OXT
LYS
LYS
284
284
0.178
0.019
1.229
1.407
N
1
A
ALA
34
-90.18
-80.96
1
A
MET
35
-21.27
-54.89
1
A
ALA
56
-170.80
138.59
1
A
ASN
62
-145.83
46.46
1
A
LYS
162
-98.46
55.40
1
A
CYS
206
-112.21
-153.10
1
A
ARG
218
6.57
-54.01
1
A
HIS
246
-171.00
-18.36
1
A
LYS
248
-63.61
-70.96
1
A
CYS
249
-78.04
-85.72
1
A
PRO
252
-57.70
-166.35
1
A
SER
253
72.79
-10.63
0.2650000
0.2270000
0.2310000
0.2310000
3.0
20.0
522
4988
4988
random
1
2.0
Engh & Huber
3.0
20.0
0
2028
10
0
2018
0.013
2.1
52.2
3.0
20.0
1GG0
4988
2.0
0.0540000
1
43.8
7.8
88.6
0.1160000
3.00
3.11
9.8
357
1
3.4
62.9
refinement
CNS
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE ANALYSIS OF KDOP SYNTHASE AT 3.0 A
1
N
N
2
N
N
2
N
N
The biological assembly is a tetramer constructed from chain A and the symmetry partners generated by two two-fold axes.
A
SER
30
A
SER
30
HELX_P
A
GLY
49
A
GLY
49
1
1
20
A
PRO
72
A
PRO
72
HELX_P
A
GLY
89
A
GLY
89
1
2
18
A
GLU
98
A
GLU
98
HELX_P
A
SER
100
A
SER
100
5
3
3
A
GLN
101
A
GLN
101
HELX_P
A
ASP
107
A
ASP
107
1
4
7
A
PRO
115
A
PRO
115
HELX_P
A
ALA
119
A
ALA
119
5
5
5
A
GLN
121
A
GLN
121
HELX_P
A
THR
131
A
THR
131
1
6
11
A
SER
144
A
SER
144
HELX_P
A
GLY
146
A
GLY
146
5
7
3
A
GLN
147
A
GLN
147
HELX_P
A
GLY
158
A
GLY
158
1
8
12
A
LEU
182
A
LEU
182
HELX_P
A
SER
191
A
SER
191
1
9
10
A
VAL
200
A
VAL
200
HELX_P
A
LEU
204
A
LEU
204
1
10
5
A
GLN
220
A
GLN
220
HELX_P
A
GLY
232
A
GLY
232
1
11
13
A
LYS
259
A
LYS
259
HELX_P
A
GLY
276
A
GLY
276
1
12
18
LYASE
beta-alpha-barrel, LYASE
KDSA_ECOLI
UNP
1
1
P0A715
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI
FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
1
284
1GG0
1
284
P0A715
A
1
1
284
2
10
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
5
A
VAL
5
A
ILE
8
A
ILE
8
A
ILE
11
A
ILE
11
A
ALA
14
A
ALA
14
A
GLY
235
A
GLY
235
A
HIS
241
A
HIS
241
A
VAL
20
A
VAL
20
A
VAL
27
A
VAL
27
A
TYR
52
A
TYR
52
A
SER
57
A
SER
57
A
LYS
91
A
LYS
91
A
ASP
95
A
ASP
95
A
VAL
111
A
VAL
111
A
LEU
114
A
LEU
114
A
VAL
134
A
VAL
134
A
LYS
138
A
LYS
138
A
VAL
163
A
VAL
163
A
ASP
167
A
ASP
167
A
VAL
196
A
VAL
196
A
ASP
199
A
ASP
199
A
GLY
235
A
GLY
235
A
HIS
241
A
HIS
241
A
LEU
255
A
LEU
255
A
PRO
256
A
PRO
256
BINDING SITE FOR RESIDUE PO4 A 290
A
PO4
290
Software
3
BINDING SITE FOR RESIDUE PO4 A 291
A
PO4
291
Software
3
A
ALA
116
A
ALA
116
3
1_555
A
LYS
138
A
LYS
138
3
1_555
A
ARG
168
A
ARG
168
3
1_555
A
ARG
63
A
ARG
63
3
1_555
A
ARG
120
A
ARG
120
3
3_656
A
ASP
250
A
ASP
250
3
1_555
197
I 2 3