0.008123 0.000000 0.000000 0.000000 0.008368 0.000000 0.000000 0.000000 0.009132 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 GLN L 42 - PRO L 43 OMEGA =146.15 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO L 77 CIS PROLINE - PRO L 95 CIS PROLINE - PRO L 141 SER L 203 - PRO L 204 OMEGA =214.76 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO H 149 CIS PROLINE - PRO H 151 CIS PROLINE - PRO H 200 Takimoto-Kamimura, M. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 123.100 119.500 109.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 1 83 93 10.1016/0969-2126(93)90024-B 8069628 Major antigen-induced domain rearrangements in an antibody. 1993 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 6325 Crystal Structure of a Human Immunodeficiency Virus Type 1 Neutralizing Antibody, 50.1, In Complex with its V3 Loop Peptide Antigen 1993 US Proteins PSFGEY 0867 0887-3585 14 499 Crystallization, Sequence, and Preliminary Crystallographic Data for an Antipeptide Fab 50.1 And Peptide Complexes with the Principal Neutralizing Determinant of HIV-1 Gp120 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23647.979 IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) 1 man polymer 23129.889 IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) 1 man polymer no no DIVLTQSPGSLAVSLGQRATISCRASESVDDDGNSFLHWYQQKPGQPPKLLIYRSSNLISGIPDRFSGSGSRTDFTLTIN PVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIVLTQSPGSLAVSLGQRATISCRASESVDDDGNSFLHWYQQKPGQPPKLLIYRSSNLISGIPDRFSGSGSRTDFTLTIN PVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no QVQLQESGPGILQPSQTLSLTCSFSGFSLSTYGMGVSWIRQPSGKGLEWLAHIFWDGDKRYNPSLKSRLKISKDTSNNQV FLKITSVDTADTATYYCVQEGYIYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR QVQLQESGPGILQPSQTLSLTCSFSGFSLSTYGMGVSWIRQPSGKGLEWLAHIFWDGDKRYNPSLKSRLKISKDTSNNQV FLKITSVDTADTATYYCVQEGYIYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse ASW sample 10090 Mus musculus house mouse ASW sample 10090 Mus musculus 4.30 71.41 repository Initial release Version format compliance Version format compliance 1 0 1993-10-31 1 1 2008-03-24 1 2 2011-07-13 Y 1993-07-19 REL THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E.KABAT (E.A.KABAT, T.T.WU, M.REID-MILLER, H.M.PERRY, K.S. GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH, BETHESDA, MD). ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L GLY 9 n 9 GLY 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L ALA 12 n 12 ALA 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L ARG 18 n 18 ARG 18 L ALA 19 n 19 ALA 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLU 27 n 27 GLU 27 L SER 27 n 28 A SER 27 L VAL 27 n 29 B VAL 27 L ASP 27 n 30 C ASP 27 L ASP 27 n 31 D ASP 27 L ASP 28 n 32 ASP 28 L GLY 29 n 33 GLY 29 L ASN 30 n 34 ASN 30 L SER 31 n 35 SER 31 L PHE 32 n 36 PHE 32 L LEU 33 n 37 LEU 33 L HIS 34 n 38 HIS 34 L TRP 35 n 39 TRP 35 L TYR 36 n 40 TYR 36 L GLN 37 n 41 GLN 37 L GLN 38 n 42 GLN 38 L LYS 39 n 43 LYS 39 L PRO 40 n 44 PRO 40 L GLY 41 n 45 GLY 41 L GLN 42 n 46 GLN 42 L PRO 43 n 47 PRO 43 L PRO 44 n 48 PRO 44 L LYS 45 n 49 LYS 45 L LEU 46 n 50 LEU 46 L LEU 47 n 51 LEU 47 L ILE 48 n 52 ILE 48 L TYR 49 n 53 TYR 49 L ARG 50 n 54 ARG 50 L SER 51 n 55 SER 51 L SER 52 n 56 SER 52 L ASN 53 n 57 ASN 53 L LEU 54 n 58 LEU 54 L ILE 55 n 59 ILE 55 L SER 56 n 60 SER 56 L GLY 57 n 61 GLY 57 L ILE 58 n 62 ILE 58 L PRO 59 n 63 PRO 59 L ASP 60 n 64 ASP 60 L ARG 61 n 65 ARG 61 L PHE 62 n 66 PHE 62 L SER 63 n 67 SER 63 L GLY 64 n 68 GLY 64 L SER 65 n 69 SER 65 L GLY 66 n 70 GLY 66 L SER 67 n 71 SER 67 L ARG 68 n 72 ARG 68 L THR 69 n 73 THR 69 L ASP 70 n 74 ASP 70 L PHE 71 n 75 PHE 71 L THR 72 n 76 THR 72 L LEU 73 n 77 LEU 73 L THR 74 n 78 THR 74 L ILE 75 n 79 ILE 75 L ASN 76 n 80 ASN 76 L PRO 77 n 81 PRO 77 L VAL 78 n 82 VAL 78 L GLU 79 n 83 GLU 79 L ALA 80 n 84 ALA 80 L ASP 81 n 85 ASP 81 L ASP 82 n 86 ASP 82 L VAL 83 n 87 VAL 83 L ALA 84 n 88 ALA 84 L THR 85 n 89 THR 85 L TYR 86 n 90 TYR 86 L TYR 87 n 91 TYR 87 L CYS 88 n 92 CYS 88 L GLN 89 n 93 GLN 89 L GLN 90 n 94 GLN 90 L SER 91 n 95 SER 91 L ASN 92 n 96 ASN 92 L GLU 93 n 97 GLU 93 L ASP 94 n 98 ASP 94 L PRO 95 n 99 PRO 95 L LEU 96 n 100 LEU 96 L THR 97 n 101 THR 97 L PHE 98 n 102 PHE 98 L GLY 99 n 103 GLY 99 L ALA 100 n 104 ALA 100 L GLY 101 n 105 GLY 101 L THR 102 n 106 THR 102 L LYS 103 n 107 LYS 103 L LEU 104 n 108 LEU 104 L GLU 105 n 109 GLU 105 L ILE 106 n 110 ILE 106 L LYS 107 n 111 LYS 107 L ARG 108 n 112 ARG 108 L ALA 109 n 113 ALA 109 L ASP 110 n 114 ASP 110 L ALA 111 n 115 ALA 111 L ALA 112 n 116 ALA 112 L PRO 113 n 117 PRO 113 L THR 114 n 118 THR 114 L VAL 115 n 119 VAL 115 L SER 116 n 120 SER 116 L ILE 117 n 121 ILE 117 L PHE 118 n 122 PHE 118 L PRO 119 n 123 PRO 119 L PRO 120 n 124 PRO 120 L SER 121 n 125 SER 121 L SER 122 n 126 SER 122 L GLU 123 n 127 GLU 123 L GLN 124 n 128 GLN 124 L LEU 125 n 129 LEU 125 L THR 126 n 130 THR 126 L SER 127 n 131 SER 127 L GLY 128 n 132 GLY 128 L GLY 129 n 133 GLY 129 L ALA 130 n 134 ALA 130 L SER 131 n 135 SER 131 L VAL 132 n 136 VAL 132 L VAL 133 n 137 VAL 133 L CYS 134 n 138 CYS 134 L PHE 135 n 139 PHE 135 L LEU 136 n 140 LEU 136 L ASN 137 n 141 ASN 137 L ASN 138 n 142 ASN 138 L PHE 139 n 143 PHE 139 L TYR 140 n 144 TYR 140 L PRO 141 n 145 PRO 141 L LYS 142 n 146 LYS 142 L ASP 143 n 147 ASP 143 L ILE 144 n 148 ILE 144 L ASN 145 n 149 ASN 145 L VAL 146 n 150 VAL 146 L LYS 147 n 151 LYS 147 L TRP 148 n 152 TRP 148 L LYS 149 n 153 LYS 149 L ILE 150 n 154 ILE 150 L ASP 151 n 155 ASP 151 L GLY 152 n 156 GLY 152 L SER 153 n 157 SER 153 L GLU 154 n 158 GLU 154 L ARG 155 n 159 ARG 155 L GLN 156 n 160 GLN 156 L ASN 157 n 161 ASN 157 L GLY 158 n 162 GLY 158 L VAL 159 n 163 VAL 159 L LEU 160 n 164 LEU 160 L ASN 161 n 165 ASN 161 L SER 162 n 166 SER 162 L TRP 163 n 167 TRP 163 L THR 164 n 168 THR 164 L ASP 165 n 169 ASP 165 L GLN 166 n 170 GLN 166 L ASP 167 n 171 ASP 167 L SER 168 n 172 SER 168 L LYS 169 n 173 LYS 169 L ASP 170 n 174 ASP 170 L SER 171 n 175 SER 171 L THR 172 n 176 THR 172 L TYR 173 n 177 TYR 173 L SER 174 n 178 SER 174 L MET 175 n 179 MET 175 L SER 176 n 180 SER 176 L SER 177 n 181 SER 177 L THR 178 n 182 THR 178 L LEU 179 n 183 LEU 179 L THR 180 n 184 THR 180 L LEU 181 n 185 LEU 181 L THR 182 n 186 THR 182 L LYS 183 n 187 LYS 183 L ASP 184 n 188 ASP 184 L GLU 185 n 189 GLU 185 L TYR 186 n 190 TYR 186 L GLU 187 n 191 GLU 187 L ARG 188 n 192 ARG 188 L HIS 189 n 193 HIS 189 L ASN 190 n 194 ASN 190 L SER 191 n 195 SER 191 L TYR 192 n 196 TYR 192 L THR 193 n 197 THR 193 L CYS 194 n 198 CYS 194 L GLU 195 n 199 GLU 195 L ALA 196 n 200 ALA 196 L THR 197 n 201 THR 197 L HIS 198 n 202 HIS 198 L LYS 199 n 203 LYS 199 L THR 200 n 204 THR 200 L SER 201 n 205 SER 201 L THR 202 n 206 THR 202 L SER 203 n 207 SER 203 L PRO 204 n 208 PRO 204 L ILE 205 n 209 ILE 205 L VAL 206 n 210 VAL 206 L LYS 207 n 211 LYS 207 L SER 208 n 212 SER 208 L PHE 209 n 213 PHE 209 L ASN 210 n 214 ASN 210 L ARG 211 n 215 ARG 211 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLY 10 n 10 GLY 10 H ILE 11 n 11 ILE 11 H LEU 12 n 12 LEU 12 H GLN 13 n 13 GLN 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H THR 17 n 17 THR 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H SER 23 n 23 SER 23 H PHE 24 n 24 PHE 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H LEU 29 n 29 LEU 29 H SER 30 n 30 SER 30 H THR 31 n 31 THR 31 H TYR 32 n 32 TYR 32 H GLY 33 n 33 GLY 33 H MET 34 n 34 MET 34 H GLY 35 n 35 GLY 35 H VAL 35 n 36 A VAL 35 H SER 35 n 37 B SER 35 H TRP 36 n 38 TRP 36 H ILE 37 n 39 ILE 37 H ARG 38 n 40 ARG 38 H GLN 39 n 41 GLN 39 H PRO 40 n 42 PRO 40 H SER 41 n 43 SER 41 H GLY 42 n 44 GLY 42 H LYS 43 n 45 LYS 43 H GLY 44 n 46 GLY 44 H LEU 45 n 47 LEU 45 H GLU 46 n 48 GLU 46 H TRP 47 n 49 TRP 47 H LEU 48 n 50 LEU 48 H ALA 49 n 51 ALA 49 H HIS 50 n 52 HIS 50 H ILE 51 n 53 ILE 51 H PHE 52 n 54 PHE 52 H TRP 53 n 55 TRP 53 H ASP 54 n 56 ASP 54 H GLY 55 n 57 GLY 55 H ASP 56 n 58 ASP 56 H LYS 57 n 59 LYS 57 H ARG 58 n 60 ARG 58 H TYR 59 n 61 TYR 59 H ASN 60 n 62 ASN 60 H PRO 61 n 63 PRO 61 H SER 62 n 64 SER 62 H LEU 63 n 65 LEU 63 H LYS 64 n 66 LYS 64 H SER 65 n 67 SER 65 H ARG 66 n 68 ARG 66 H LEU 67 n 69 LEU 67 H LYS 68 n 70 LYS 68 H ILE 69 n 71 ILE 69 H SER 70 n 72 SER 70 H LYS 71 n 73 LYS 71 H ASP 72 n 74 ASP 72 H THR 73 n 75 THR 73 H SER 74 n 76 SER 74 H ASN 75 n 77 ASN 75 H ASN 76 n 78 ASN 76 H GLN 77 n 79 GLN 77 H VAL 78 n 80 VAL 78 H PHE 79 n 81 PHE 79 H LEU 80 n 82 LEU 80 H LYS 81 n 83 LYS 81 H ILE 82 n 84 ILE 82 H THR 82 n 85 A THR 82 H SER 82 n 86 B SER 82 H VAL 82 n 87 C VAL 82 H ASP 83 n 88 ASP 83 H THR 84 n 89 THR 84 H ALA 85 n 90 ALA 85 H ASP 86 n 91 ASP 86 H THR 87 n 92 THR 87 H ALA 88 n 93 ALA 88 H THR 89 n 94 THR 89 H TYR 90 n 95 TYR 90 H TYR 91 n 96 TYR 91 H CYS 92 n 97 CYS 92 H VAL 93 n 98 VAL 93 H GLN 94 n 99 GLN 94 H GLU 95 n 100 GLU 95 H GLY 96 n 101 GLY 96 H TYR 97 n 102 TYR 97 H ILE 101 n 103 ILE 101 H TYR 102 n 104 TYR 102 H TRP 103 n 105 TRP 103 H GLY 104 n 106 GLY 104 H GLN 105 n 107 GLN 105 H GLY 106 n 108 GLY 106 H THR 107 n 109 THR 107 H SER 108 n 110 SER 108 H VAL 109 n 111 VAL 109 H THR 110 n 112 THR 110 H VAL 111 n 113 VAL 111 H SER 112 n 114 SER 112 H SER 113 n 115 SER 113 H ALA 114 n 116 ALA 114 H LYS 115 n 117 LYS 115 H THR 116 n 118 THR 116 H THR 117 n 119 THR 117 H ALA 118 n 120 ALA 118 H PRO 119 n 121 PRO 119 H SER 120 n 122 SER 120 H VAL 121 n 123 VAL 121 H TYR 122 n 124 TYR 122 H PRO 123 n 125 PRO 123 H LEU 124 n 126 LEU 124 H ALA 125 n 127 ALA 125 H PRO 126 n 128 PRO 126 H VAL 127 n 129 VAL 127 H CYS 128 n 130 CYS 128 H GLY 129 n 131 GLY 129 H ASP 130 n 132 ASP 130 H THR 133 n 133 THR 133 H THR 134 n 134 THR 134 H GLY 135 n 135 GLY 135 H SER 136 n 136 SER 136 H SER 137 n 137 SER 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H LEU 140 n 140 LEU 140 H GLY 141 n 141 GLY 141 H CYS 142 n 142 CYS 142 H LEU 143 n 143 LEU 143 H VAL 144 n 144 VAL 144 H LYS 145 n 145 LYS 145 H GLY 146 n 146 GLY 146 H TYR 147 n 147 TYR 147 H PHE 148 n 148 PHE 148 H PRO 149 n 149 PRO 149 H GLU 150 n 150 GLU 150 H PRO 151 n 151 PRO 151 H VAL 152 n 152 VAL 152 H THR 153 n 153 THR 153 H LEU 154 n 154 LEU 154 H THR 156 n 155 THR 156 H TRP 157 n 156 TRP 157 H ASN 162 n 157 ASN 162 H SER 163 n 158 SER 163 H GLY 164 n 159 GLY 164 H SER 165 n 160 SER 165 H LEU 166 n 161 LEU 166 H SER 167 n 162 SER 167 H SER 168 n 163 SER 168 H GLY 169 n 164 GLY 169 H VAL 171 n 165 VAL 171 H HIS 172 n 166 HIS 172 H THR 173 n 167 THR 173 H PHE 174 n 168 PHE 174 H PRO 175 n 169 PRO 175 H ALA 176 n 170 ALA 176 H VAL 177 n 171 VAL 177 H LEU 178 n 172 LEU 178 H GLN 179 n 173 GLN 179 H SER 180 n 174 SER 180 H ASP 183 n 175 ASP 183 H LEU 184 n 176 LEU 184 H TYR 185 n 177 TYR 185 H THR 186 n 178 THR 186 H LEU 187 n 179 LEU 187 H SER 188 n 180 SER 188 H SER 189 n 181 SER 189 H SER 190 n 182 SER 190 H VAL 191 n 183 VAL 191 H THR 192 n 184 THR 192 H VAL 193 n 185 VAL 193 H THR 194 n 186 THR 194 H SER 195 n 187 SER 195 H SER 196 n 188 SER 196 H THR 198 n 189 THR 198 H TRP 199 n 190 TRP 199 H PRO 200 n 191 PRO 200 H SER 202 n 192 SER 202 H GLN 203 n 193 GLN 203 H SER 204 n 194 SER 204 H ILE 205 n 195 ILE 205 H THR 206 n 196 THR 206 H CYS 208 n 197 CYS 208 H ASN 209 n 198 ASN 209 H VAL 210 n 199 VAL 210 H ALA 211 n 200 ALA 211 H HIS 212 n 201 HIS 212 H PRO 213 n 202 PRO 213 H ALA 214 n 203 ALA 214 H SER 215 n 204 SER 215 H SER 216 n 205 SER 216 H THR 217 n 206 THR 217 H LYS 218 n 207 LYS 218 H VAL 219 n 208 VAL 219 H ASP 220 n 209 ASP 220 H LYS 221 n 210 LYS 221 H LYS 222 n 211 LYS 222 H ILE 223 n 212 ILE 223 H GLU 226 n 213 GLU 226 H PRO 227 n 214 PRO 227 H ARG 228 n 215 ARG 228 H author_and_software_defined_assembly PISA 2 dimeric 3260 -21 19310 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O SER 7 A O SER 7 L N SER 22 A N SER 22 L N CYS 23 A N CYS 23 L O PHE 71 A O PHE 75 L N THR 74 A N THR 78 L O SER 63 A O SER 67 L O ASN 53 A O ASN 57 L N TYR 49 A N TYR 53 L N LEU 47 A N LEU 51 L O TRP 35 A O TRP 39 L N GLN 38 A N GLN 42 L O THR 85 A O THR 89 L N GLN 90 A N GLN 94 L O THR 97 A O THR 101 L O ASN 53 A O ASN 57 L N TYR 49 A N TYR 53 L N LEU 47 A N LEU 51 L O TRP 35 A O TRP 39 L N GLN 38 A N GLN 42 L O THR 85 A O THR 89 L N TYR 86 A N TYR 90 L O THR 102 A O THR 106 L N GLU 105 A N GLU 109 L O LEU 11 A O LEU 11 L O PHE 118 A O PHE 122 L N VAL 133 A N VAL 137 L O PHE 139 A O PHE 143 L N TYR 173 A N TYR 177 L O THR 178 A O THR 182 L N LEU 160 A N LEU 164 L N ARG 155 A N ARG 159 L O TRP 148 A O TRP 152 L O LYS 149 A O LYS 153 L N THR 193 A N THR 197 L O ALA 196 A O ALA 200 L N ILE 205 A N ILE 209 H O SER 7 B O SER 7 H N THR 21 B N THR 21 H N CYS 22 B N CYS 22 H O VAL 78 B O VAL 80 H N PHE 79 B N PHE 81 H O SER 70 B O SER 72 H N LEU 12 B N LEU 12 H O THR 110 B O THR 112 H N VAL 109 B N VAL 111 H O ALA 88 B O ALA 93 H N ARG 38 B N ARG 40 H O GLU 46 B O GLU 48 H O HIS 50 B O HIS 52 H N ARG 58 B N ARG 60 H O LEU 124 B O LEU 126 H N GLY 141 B N GLY 141 H O TYR 147 B O TYR 147 H N TYR 185 B N TYR 177 H N SER 190 B N SER 182 H O HIS 172 B O HIS 166 H O LEU 124 B O LEU 126 H N GLY 141 B N GLY 141 H O TYR 147 B O TYR 147 H N TYR 185 B N TYR 177 H N THR 186 B N THR 178 H O VAL 177 B O VAL 171 H O THR 156 B O THR 155 H N ASN 209 B N ASN 198 H N HIS 212 B N HIS 201 H O THR 217 B O THR 206 1 L L GLN PRO 42 43 146.15 1 L L SER PRO 203 204 -145.23 1 6.59 0.80 106.30 112.89 L L L CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 -5.96 0.80 107.30 101.34 L L L CE2 CD2 CG TRP TRP TRP 35 35 35 N 1 -4.42 0.60 121.00 116.58 L L L CB CG CD2 TYR TYR TYR 49 49 49 N 1 3.37 0.50 120.30 123.67 L L L NE CZ NH1 ARG ARG ARG 50 50 50 N 1 -7.48 0.50 120.30 112.82 L L L NE CZ NH2 ARG ARG ARG 50 50 50 N 1 16.09 2.20 117.20 133.29 L L L CA C N PRO PRO THR 113 113 114 Y 1 6.72 0.80 106.30 113.02 L L L CD1 CG CD2 TRP TRP TRP 148 148 148 N 1 -7.86 1.00 110.10 102.24 L L L CG CD1 NE1 TRP TRP TRP 148 148 148 N 1 -5.23 0.80 107.30 102.07 L L L CE2 CD2 CG TRP TRP TRP 148 148 148 N 1 3.09 0.50 120.30 123.39 L L L NE CZ NH1 ARG ARG ARG 155 155 155 N 1 -6.87 0.50 120.30 113.43 L L L NE CZ NH2 ARG ARG ARG 155 155 155 N 1 7.45 0.80 106.30 113.75 L L L CD1 CG CD2 TRP TRP TRP 163 163 163 N 1 -6.23 1.00 110.10 103.87 L L L CG CD1 NE1 TRP TRP TRP 163 163 163 N 1 -5.89 0.80 107.30 101.41 L L L CE2 CD2 CG TRP TRP TRP 163 163 163 N 1 -4.15 0.60 121.00 116.85 L L L CB CG CD1 TYR TYR TYR 186 186 186 N 1 4.53 0.50 120.30 124.83 L L L NE CZ NH1 ARG ARG ARG 188 188 188 N 1 -12.29 1.80 114.00 101.71 L L L CA CB SG CYS CYS CYS 194 194 194 N 1 6.99 0.50 120.30 127.29 L L L NE CZ NH1 ARG ARG ARG 211 211 211 N 1 -6.97 0.50 120.30 113.33 L L L NE CZ NH2 ARG ARG ARG 211 211 211 N 1 -17.56 2.70 111.00 93.44 H H H N CA C GLN GLN GLN 3 3 3 N 1 14.33 2.30 115.30 129.63 H H H CA CB CG LEU LEU LEU 12 12 12 N 1 -3.90 0.60 121.00 117.10 H H H CB CG CD2 TYR TYR TYR 32 32 32 N 1 5.48 0.80 106.30 111.78 H H H CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -4.91 0.80 107.30 102.39 H H H CE2 CD2 CG TRP TRP TRP 36 36 36 N 1 3.45 0.50 120.30 123.75 H H H NE CZ NH1 ARG ARG ARG 38 38 38 N 1 5.16 0.80 106.30 111.46 H H H CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -5.20 0.80 107.30 102.10 H H H CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 6.85 0.80 106.30 113.15 H H H CD1 CG CD2 TRP TRP TRP 53 53 53 N 1 -8.57 1.30 127.00 118.43 H H H CB CG CD1 TRP TRP TRP 53 53 53 N 1 -6.15 1.00 110.10 103.95 H H H CG CD1 NE1 TRP TRP TRP 53 53 53 N 1 -6.20 0.80 107.30 101.10 H H H CE2 CD2 CG TRP TRP TRP 53 53 53 N 1 5.86 0.90 133.90 139.76 H H H CG CD2 CE3 TRP TRP TRP 53 53 53 N 1 3.89 0.50 120.30 124.19 H H H NE CZ NH1 ARG ARG ARG 58 58 58 N 1 -3.64 0.60 121.00 117.36 H H H CB CG CD1 TYR TYR TYR 59 59 59 N 1 7.97 0.50 120.30 128.27 H H H NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -6.48 0.50 120.30 113.82 H H H NE CZ NH2 ARG ARG ARG 66 66 66 N 1 6.71 0.80 106.30 113.01 H H H CD1 CG CD2 TRP TRP TRP 103 103 103 N 1 -5.36 0.80 107.30 101.94 H H H CE2 CD2 CG TRP TRP TRP 103 103 103 N 1 -4.28 0.60 121.00 116.72 H H H CB CG CD1 TYR TYR TYR 122 122 122 N 1 -9.86 1.50 110.90 101.04 H H H CA CB CG1 VAL VAL VAL 127 127 127 N 1 21.64 2.70 111.00 132.64 H H H N CA C CYS CYS CYS 128 128 128 N 1 -24.29 2.70 111.20 86.91 H H H CA CB OG SER SER SER 136 136 136 N 1 -17.03 2.20 117.20 100.17 H H H CA C N SER SER SER 136 136 137 Y 1 7.40 0.80 106.30 113.70 H H H CD1 CG CD2 TRP TRP TRP 157 157 157 N 1 -6.46 1.00 110.10 103.64 H H H CG CD1 NE1 TRP TRP TRP 157 157 157 N 1 -6.01 0.80 107.30 101.29 H H H CE2 CD2 CG TRP TRP TRP 157 157 157 N 1 -16.54 2.70 111.00 94.46 H H H N CA C GLN GLN GLN 179 179 179 N 1 -5.22 0.60 121.00 115.78 H H H CB CG CD2 TYR TYR TYR 185 185 185 N 1 7.81 0.80 106.30 114.11 H H H CD1 CG CD2 TRP TRP TRP 199 199 199 N 1 -7.01 1.00 110.10 103.09 H H H CG CD1 NE1 TRP TRP TRP 199 199 199 N 1 -6.00 0.80 107.30 101.30 H H H CE2 CD2 CG TRP TRP TRP 199 199 199 N 1 -21.03 2.20 113.40 92.37 H H H CA CB CG GLU GLU GLU 226 226 226 N 1 L L CA CB SER SER 162 162 -0.106 0.015 1.525 1.419 N 1 L L NE2 CD2 HIS HIS 198 198 -0.068 0.011 1.373 1.305 N 1 H H CA CB PHE PHE 52 52 -0.157 0.022 1.535 1.378 N 1 H H CA CB SER SER 120 120 -0.120 0.015 1.525 1.405 N 1 H H CA CB CYS CYS 142 142 -0.097 0.013 1.526 1.429 N 1 H H NE2 CD2 HIS HIS 212 212 -0.068 0.011 1.373 1.305 N 1 L LEU 15 -51.49 100.10 D 1 L ASP 27 -95.57 50.94 1 L ASP 28 50.28 83.56 1 L ARG 50 30.82 68.40 1 L SER 51 66.91 -53.58 1 L SER 56 -56.11 106.55 1 L ASP 60 -39.81 -22.23 1 L SER 67 -176.97 135.77 1 L ARG 68 60.29 -59.34 1 L ASN 76 -167.05 118.24 1 L ALA 84 -179.51 -174.22 1 L SER 91 -142.08 31.68 1 L PRO 113 -58.92 107.04 1 L THR 114 -54.72 105.14 1 H VAL 2 51.46 97.79 1 H PRO 14 -46.98 151.63 1 H SER 41 -47.02 107.14 1 H LYS 43 -69.40 -176.24 1 H GLU 95 59.81 6.07 1 H TYR 97 179.73 -25.39 1 H CYS 128 87.25 126.57 1 H ASP 130 -35.28 104.98 1 H THR 134 74.59 65.19 1 H SER 163 48.30 29.86 0.2 0.2 2.8 1 2.8 0 3291 0 0 3291 0.02 3.9 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG2A FAB FRAGMENT (50.1) MAJOR ANTIGEN-INDUCED DOMAIN REARRANGEMENTS IN AN ANTIBODY 1 N N 2 N N L GLU 79 A GLU 83 HELX_P L VAL 83 A VAL 87 5 1 5 L SER 121 A SER 125 HELX_P L SER 127 A SER 131 1 2 7 L LYS 183 A LYS 187 HELX_P L ARG 188 A ARG 192 1 3 6 H LEU 63 B LEU 65 HELX_P H ARG 66 B ARG 68 5 4 4 H THR 73 B THR 75 HELX_P H ASN 75 B ASN 77 5 5 3 H ASP 83 B ASP 88 HELX_P H ASP 86 B ASP 91 5 6 4 H SER 163 B SER 158 HELX_P H SER 165 B SER 160 5 7 3 H PRO 213 B PRO 202 HELX_P H SER 216 B SER 205 5 8 4 disulf 2.145 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 92 1_555 disulf 2.012 L CYS 134 A SG CYS 138 1_555 L CYS 194 A SG CYS 198 1_555 disulf 1.989 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 97 1_555 disulf 2.000 H CYS 142 B SG CYS 142 1_555 H CYS 208 B SG CYS 197 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 2.79 L ASN 76 A ASN 80 1 L PRO 77 A PRO 81 -13.91 L ASP 94 A ASP 98 1 L PRO 95 A PRO 99 -2.19 L TYR 140 A TYR 144 1 L PRO 141 A PRO 145 -22.81 H PHE 148 B PHE 148 1 H PRO 149 B PRO 149 -3.01 H GLU 150 B GLU 150 1 H PRO 151 B PRO 151 3.94 H TRP 199 B TRP 190 1 H PRO 200 B PRO 191 2.56 CAA10344 EMBL 1 1 AJ131289 ELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTIN PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC GCAM_MOUSE UNP 2 1 P01865 AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI TCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISW FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEE MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHT TKSFSRTPGLDLDDVCAEAQDGELDGLWTTITIFISLFLLSVCYSASVTLFKVKWIFSSVVELKQTISPDYRNMIGQGA 3 215 1GGB 3 211 AJ131289 L 1 3 215 1 100 1GGB 114 228 P01865 H 2 116 215 1 MET CONFLICT LEU 4 1GGB L AJ131289 EMBL 4 4 1 THR CONFLICT SER 7 1GGB L AJ131289 EMBL 7 7 1 ALA CONFLICT GLY 9 1GGB L AJ131289 EMBL 9 9 1 ASN CONFLICT SER 27 1GGB A L AJ131289 EMBL 28 28 1 ARG CONFLICT ASP 27 1GGB C L AJ131289 EMBL 31 30 1 TYR CONFLICT ASP 28 1GGB L AJ131289 EMBL 32 32 1 MET CONFLICT LEU 33 1GGB L AJ131289 EMBL 37 37 1 ALA CONFLICT PRO 40 1GGB L AJ131289 EMBL 44 44 1 ALA CONFLICT SER 51 1GGB L AJ131289 EMBL 55 55 1 GLU CONFLICT ILE 55 1GGB L AJ131289 EMBL 59 59 1 ALA CONFLICT ASP 60 1GGB L AJ131289 EMBL 64 64 1 PHE CONFLICT TYR 87 1GGB L AJ131289 EMBL 91 91 1 ARG CONFLICT GLN 90 1GGB L AJ131289 EMBL 94 94 1 VAL CONFLICT ASP 94 1GGB L AJ131289 EMBL 98 98 1 TRP CONFLICT LEU 96 1GGB L AJ131289 EMBL 100 100 1 GLY CONFLICT ALA 100 1GGB L AJ131289 EMBL 104 104 4 5 6 4 4 4 6 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L SER 7 A SER 7 L ALA 19 A ALA 19 L ALA 25 A ALA 25 L ASP 70 A ASP 74 L ILE 75 A ILE 79 L PHE 62 A PHE 66 L SER 67 A SER 71 L ASN 53 A ASN 57 L LEU 54 A LEU 58 L LYS 45 A LYS 49 L TYR 49 A TYR 53 L LEU 33 A LEU 37 L GLN 38 A GLN 42 L ALA 84 A ALA 88 L GLN 90 A GLN 94 L THR 97 A THR 101 L PHE 98 A PHE 102 L ASN 53 A ASN 57 L LEU 54 A LEU 58 L LYS 45 A LYS 49 L TYR 49 A TYR 53 L LEU 33 A LEU 37 L GLN 38 A GLN 42 L ALA 84 A ALA 88 L GLN 90 A GLN 94 L THR 102 A THR 106 L ILE 106 A ILE 110 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 114 A THR 118 L PHE 118 A PHE 122 L GLY 129 A GLY 133 L PHE 139 A PHE 143 L TYR 173 A TYR 177 L THR 182 A THR 186 L VAL 159 A VAL 163 L TRP 163 A TRP 167 L SER 153 A SER 157 L ARG 155 A ARG 159 L ILE 144 A ILE 148 L ILE 150 A ILE 154 L SER 191 A SER 195 L HIS 198 A HIS 202 L ILE 205 A ILE 209 L ASN 210 A ASN 214 H GLN 3 B GLN 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H GLN 77 B GLN 79 H ILE 82 B ILE 84 H SER 70 B SER 72 H ASP 72 B ASP 74 H ILE 11 B ILE 11 H LEU 12 B LEU 12 H THR 107 B THR 109 H VAL 111 B VAL 113 H ALA 88 B ALA 93 H GLN 94 B GLN 99 H GLY 35 B GLY 35 H PRO 40 B PRO 42 H GLU 46 B GLU 48 H PHE 52 B PHE 54 H LYS 57 B LYS 59 H TYR 59 B TYR 61 H SER 120 B SER 122 H LEU 124 B LEU 126 H SER 137 B SER 137 H TYR 147 B TYR 147 H LEU 184 B LEU 176 H THR 194 B THR 186 H HIS 172 B HIS 166 H THR 173 B THR 167 H SER 120 B SER 122 H LEU 124 B LEU 126 H SER 137 B SER 137 H TYR 147 B TYR 147 H LEU 184 B LEU 176 H THR 194 B THR 186 H VAL 177 B VAL 171 H GLN 179 B GLN 173 H THR 153 B THR 153 H TRP 157 B TRP 156 H THR 206 B THR 196 H HIS 212 B HIS 201 H THR 217 B THR 206 H LYS 222 B LYS 211 23 I 2 2 2