0.011947
0.000000
0.000000
0.000000
0.009033
0.000000
0.000000
0.000000
0.017762
0.00000
0.00000
0.00000
CIS PROLINE - PRO L 8
GLN L 42 - PRO L 43 OMEGA =146.05 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CIS PROLINE - PRO L 77
CIS PROLINE - PRO L 95
CIS PROLINE - PRO L 141
CIS PROLINE - PRO H 149
CIS PROLINE - PRO H 151
CIS PROLINE - PRO H 200
Takimoto-Kamimura, M.
Wilson, I.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
83.700
110.700
56.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
1
83
93
10.1016/0969-2126(93)90024-B
8069628
Major antigen-induced domain rearrangements in an antibody.
1993
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
90
6325
Crystal Structure of a Human Immunodeficiency Virus Type 1 Neutralizing Antibody, 50.1, In Complex with its V3 Loop Peptide Antigen
1993
US
Proteins
PSFGEY
0867
0887-3585
14
499
Crystallization, Sequence, and Preliminary Crystallographic Data for an Antipeptide Fab 50.1 And Peptide Complexes with the Principal Neutralizing Determinant of HIV-1 Gp120
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
23647.979
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN)
1
man
polymer
23129.889
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN)
1
man
polymer
no
no
DIVLTQSPGSLAVSLGQRATISCRASESVDDDGNSFLHWYQQKPGQPPKLLIYRSSNLISGIPDRFSGSGSRTDFTLTIN
PVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
DIVLTQSPGSLAVSLGQRATISCRASESVDDDGNSFLHWYQQKPGQPPKLLIYRSSNLISGIPDRFSGSGSRTDFTLTIN
PVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
L
polypeptide(L)
no
no
QVQLQESGPGILQPSQTLSLTCSFSGFSLSTYGMGVSWIRQPSGKGLEWLAHIFWDGDKRYNPSLKSRLKISKDTSNNQV
FLKITSVDTADTATYYCVQEGYIYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS
LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
QVQLQESGPGILQPSQTLSLTCSFSGFSLSTYGMGVSWIRQPSGKGLEWLAHIFWDGDKRYNPSLKSRLKISKDTSNNQV
FLKITSVDTADTATYYCVQEGYIYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS
LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
ASW
sample
10090
Mus musculus
house mouse
ASW
sample
10090
Mus musculus
2.79
55.86
repository
Initial release
Version format compliance
Version format compliance
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
Y
1993-07-19
REL
THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E.KABAT
(E.A.KABAT, T.T.WU, M.REID-MILLER, H.M.PERRY, K.S.
GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL
INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH,
BETHESDA, MD.)
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
GLY
9
n
9
GLY
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
ALA
12
n
12
ALA
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
ARG
18
n
18
ARG
18
L
ALA
19
n
19
ALA
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLU
27
n
27
GLU
27
L
SER
27
n
28
A
SER
27
L
VAL
27
n
29
B
VAL
27
L
ASP
27
n
30
C
ASP
27
L
ASP
27
n
31
D
ASP
27
L
ASP
28
n
32
ASP
28
L
GLY
29
n
33
GLY
29
L
ASN
30
n
34
ASN
30
L
SER
31
n
35
SER
31
L
PHE
32
n
36
PHE
32
L
LEU
33
n
37
LEU
33
L
HIS
34
n
38
HIS
34
L
TRP
35
n
39
TRP
35
L
TYR
36
n
40
TYR
36
L
GLN
37
n
41
GLN
37
L
GLN
38
n
42
GLN
38
L
LYS
39
n
43
LYS
39
L
PRO
40
n
44
PRO
40
L
GLY
41
n
45
GLY
41
L
GLN
42
n
46
GLN
42
L
PRO
43
n
47
PRO
43
L
PRO
44
n
48
PRO
44
L
LYS
45
n
49
LYS
45
L
LEU
46
n
50
LEU
46
L
LEU
47
n
51
LEU
47
L
ILE
48
n
52
ILE
48
L
TYR
49
n
53
TYR
49
L
ARG
50
n
54
ARG
50
L
SER
51
n
55
SER
51
L
SER
52
n
56
SER
52
L
ASN
53
n
57
ASN
53
L
LEU
54
n
58
LEU
54
L
ILE
55
n
59
ILE
55
L
SER
56
n
60
SER
56
L
GLY
57
n
61
GLY
57
L
ILE
58
n
62
ILE
58
L
PRO
59
n
63
PRO
59
L
ASP
60
n
64
ASP
60
L
ARG
61
n
65
ARG
61
L
PHE
62
n
66
PHE
62
L
SER
63
n
67
SER
63
L
GLY
64
n
68
GLY
64
L
SER
65
n
69
SER
65
L
GLY
66
n
70
GLY
66
L
SER
67
n
71
SER
67
L
ARG
68
n
72
ARG
68
L
THR
69
n
73
THR
69
L
ASP
70
n
74
ASP
70
L
PHE
71
n
75
PHE
71
L
THR
72
n
76
THR
72
L
LEU
73
n
77
LEU
73
L
THR
74
n
78
THR
74
L
ILE
75
n
79
ILE
75
L
ASN
76
n
80
ASN
76
L
PRO
77
n
81
PRO
77
L
VAL
78
n
82
VAL
78
L
GLU
79
n
83
GLU
79
L
ALA
80
n
84
ALA
80
L
ASP
81
n
85
ASP
81
L
ASP
82
n
86
ASP
82
L
VAL
83
n
87
VAL
83
L
ALA
84
n
88
ALA
84
L
THR
85
n
89
THR
85
L
TYR
86
n
90
TYR
86
L
TYR
87
n
91
TYR
87
L
CYS
88
n
92
CYS
88
L
GLN
89
n
93
GLN
89
L
GLN
90
n
94
GLN
90
L
SER
91
n
95
SER
91
L
ASN
92
n
96
ASN
92
L
GLU
93
n
97
GLU
93
L
ASP
94
n
98
ASP
94
L
PRO
95
n
99
PRO
95
L
LEU
96
n
100
LEU
96
L
THR
97
n
101
THR
97
L
PHE
98
n
102
PHE
98
L
GLY
99
n
103
GLY
99
L
ALA
100
n
104
ALA
100
L
GLY
101
n
105
GLY
101
L
THR
102
n
106
THR
102
L
LYS
103
n
107
LYS
103
L
LEU
104
n
108
LEU
104
L
GLU
105
n
109
GLU
105
L
ILE
106
n
110
ILE
106
L
LYS
107
n
111
LYS
107
L
ARG
108
n
112
ARG
108
L
ALA
109
n
113
ALA
109
L
ASP
110
n
114
ASP
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
THR
114
n
118
THR
114
L
VAL
115
n
119
VAL
115
L
SER
116
n
120
SER
116
L
ILE
117
n
121
ILE
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLN
124
n
128
GLN
124
L
LEU
125
n
129
LEU
125
L
THR
126
n
130
THR
126
L
SER
127
n
131
SER
127
L
GLY
128
n
132
GLY
128
L
GLY
129
n
133
GLY
129
L
ALA
130
n
134
ALA
130
L
SER
131
n
135
SER
131
L
VAL
132
n
136
VAL
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
PHE
135
n
139
PHE
135
L
LEU
136
n
140
LEU
136
L
ASN
137
n
141
ASN
137
L
ASN
138
n
142
ASN
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
LYS
142
n
146
LYS
142
L
ASP
143
n
147
ASP
143
L
ILE
144
n
148
ILE
144
L
ASN
145
n
149
ASN
145
L
VAL
146
n
150
VAL
146
L
LYS
147
n
151
LYS
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ILE
150
n
154
ILE
150
L
ASP
151
n
155
ASP
151
L
GLY
152
n
156
GLY
152
L
SER
153
n
157
SER
153
L
GLU
154
n
158
GLU
154
L
ARG
155
n
159
ARG
155
L
GLN
156
n
160
GLN
156
L
ASN
157
n
161
ASN
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
LEU
160
n
164
LEU
160
L
ASN
161
n
165
ASN
161
L
SER
162
n
166
SER
162
L
TRP
163
n
167
TRP
163
L
THR
164
n
168
THR
164
L
ASP
165
n
169
ASP
165
L
GLN
166
n
170
GLN
166
L
ASP
167
n
171
ASP
167
L
SER
168
n
172
SER
168
L
LYS
169
n
173
LYS
169
L
ASP
170
n
174
ASP
170
L
SER
171
n
175
SER
171
L
THR
172
n
176
THR
172
L
TYR
173
n
177
TYR
173
L
SER
174
n
178
SER
174
L
MET
175
n
179
MET
175
L
SER
176
n
180
SER
176
L
SER
177
n
181
SER
177
L
THR
178
n
182
THR
178
L
LEU
179
n
183
LEU
179
L
THR
180
n
184
THR
180
L
LEU
181
n
185
LEU
181
L
THR
182
n
186
THR
182
L
LYS
183
n
187
LYS
183
L
ASP
184
n
188
ASP
184
L
GLU
185
n
189
GLU
185
L
TYR
186
n
190
TYR
186
L
GLU
187
n
191
GLU
187
L
ARG
188
n
192
ARG
188
L
HIS
189
n
193
HIS
189
L
ASN
190
n
194
ASN
190
L
SER
191
n
195
SER
191
L
TYR
192
n
196
TYR
192
L
THR
193
n
197
THR
193
L
CYS
194
n
198
CYS
194
L
GLU
195
n
199
GLU
195
L
ALA
196
n
200
ALA
196
L
THR
197
n
201
THR
197
L
HIS
198
n
202
HIS
198
L
LYS
199
n
203
LYS
199
L
THR
200
n
204
THR
200
L
SER
201
n
205
SER
201
L
THR
202
n
206
THR
202
L
SER
203
n
207
SER
203
L
PRO
204
n
208
PRO
204
L
ILE
205
n
209
ILE
205
L
VAL
206
n
210
VAL
206
L
LYS
207
n
211
LYS
207
L
SER
208
n
212
SER
208
L
PHE
209
n
213
PHE
209
L
ASN
210
n
214
ASN
210
L
ARG
211
n
215
ARG
211
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
ILE
11
n
11
ILE
11
H
LEU
12
n
12
LEU
12
H
GLN
13
n
13
GLN
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
THR
17
n
17
THR
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
SER
23
n
23
SER
23
H
PHE
24
n
24
PHE
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
SER
28
n
28
SER
28
H
LEU
29
n
29
LEU
29
H
SER
30
n
30
SER
30
H
THR
31
n
31
THR
31
H
TYR
32
n
32
TYR
32
H
GLY
33
n
33
GLY
33
H
MET
34
n
34
MET
34
H
GLY
35
n
35
GLY
35
H
VAL
35
n
36
A
VAL
35
H
SER
35
n
37
B
SER
35
H
TRP
36
n
38
TRP
36
H
ILE
37
n
39
ILE
37
H
ARG
38
n
40
ARG
38
H
GLN
39
n
41
GLN
39
H
PRO
40
n
42
PRO
40
H
SER
41
n
43
SER
41
H
GLY
42
n
44
GLY
42
H
LYS
43
n
45
LYS
43
H
GLY
44
n
46
GLY
44
H
LEU
45
n
47
LEU
45
H
GLU
46
n
48
GLU
46
H
TRP
47
n
49
TRP
47
H
LEU
48
n
50
LEU
48
H
ALA
49
n
51
ALA
49
H
HIS
50
n
52
HIS
50
H
ILE
51
n
53
ILE
51
H
PHE
52
n
54
PHE
52
H
TRP
53
n
55
TRP
53
H
ASP
54
n
56
ASP
54
H
GLY
55
n
57
GLY
55
H
ASP
56
n
58
ASP
56
H
LYS
57
n
59
LYS
57
H
ARG
58
n
60
ARG
58
H
TYR
59
n
61
TYR
59
H
ASN
60
n
62
ASN
60
H
PRO
61
n
63
PRO
61
H
SER
62
n
64
SER
62
H
LEU
63
n
65
LEU
63
H
LYS
64
n
66
LYS
64
H
SER
65
n
67
SER
65
H
ARG
66
n
68
ARG
66
H
LEU
67
n
69
LEU
67
H
LYS
68
n
70
LYS
68
H
ILE
69
n
71
ILE
69
H
SER
70
n
72
SER
70
H
LYS
71
n
73
LYS
71
H
ASP
72
n
74
ASP
72
H
THR
73
n
75
THR
73
H
SER
74
n
76
SER
74
H
ASN
75
n
77
ASN
75
H
ASN
76
n
78
ASN
76
H
GLN
77
n
79
GLN
77
H
VAL
78
n
80
VAL
78
H
PHE
79
n
81
PHE
79
H
LEU
80
n
82
LEU
80
H
LYS
81
n
83
LYS
81
H
ILE
82
n
84
ILE
82
H
THR
82
n
85
A
THR
82
H
SER
82
n
86
B
SER
82
H
VAL
82
n
87
C
VAL
82
H
ASP
83
n
88
ASP
83
H
THR
84
n
89
THR
84
H
ALA
85
n
90
ALA
85
H
ASP
86
n
91
ASP
86
H
THR
87
n
92
THR
87
H
ALA
88
n
93
ALA
88
H
THR
89
n
94
THR
89
H
TYR
90
n
95
TYR
90
H
TYR
91
n
96
TYR
91
H
CYS
92
n
97
CYS
92
H
VAL
93
n
98
VAL
93
H
GLN
94
n
99
GLN
94
H
GLU
95
n
100
GLU
95
H
GLY
96
n
101
GLY
96
H
TYR
97
n
102
TYR
97
H
ILE
101
n
103
ILE
101
H
TYR
102
n
104
TYR
102
H
TRP
103
n
105
TRP
103
H
GLY
104
n
106
GLY
104
H
GLN
105
n
107
GLN
105
H
GLY
106
n
108
GLY
106
H
THR
107
n
109
THR
107
H
SER
108
n
110
SER
108
H
VAL
109
n
111
VAL
109
H
THR
110
n
112
THR
110
H
VAL
111
n
113
VAL
111
H
SER
112
n
114
SER
112
H
SER
113
n
115
SER
113
H
ALA
114
n
116
ALA
114
H
LYS
115
n
117
LYS
115
H
THR
116
n
118
THR
116
H
THR
117
n
119
THR
117
H
ALA
118
n
120
ALA
118
H
PRO
119
n
121
PRO
119
H
SER
120
n
122
SER
120
H
VAL
121
n
123
VAL
121
H
TYR
122
n
124
TYR
122
H
PRO
123
n
125
PRO
123
H
LEU
124
n
126
LEU
124
H
ALA
125
n
127
ALA
125
H
PRO
126
n
128
PRO
126
H
VAL
127
n
129
VAL
127
H
CYS
128
n
130
CYS
128
H
GLY
129
n
131
GLY
129
H
ASP
130
n
132
ASP
130
H
THR
133
n
133
THR
133
H
THR
134
n
134
THR
134
H
GLY
135
n
135
GLY
135
H
SER
136
n
136
SER
136
H
SER
137
n
137
SER
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
LEU
140
n
140
LEU
140
H
GLY
141
n
141
GLY
141
H
CYS
142
n
142
CYS
142
H
LEU
143
n
143
LEU
143
H
VAL
144
n
144
VAL
144
H
LYS
145
n
145
LYS
145
H
GLY
146
n
146
GLY
146
H
TYR
147
n
147
TYR
147
H
PHE
148
n
148
PHE
148
H
PRO
149
n
149
PRO
149
H
GLU
150
n
150
GLU
150
H
PRO
151
n
151
PRO
151
H
VAL
152
n
152
VAL
152
H
THR
153
n
153
THR
153
H
LEU
154
n
154
LEU
154
H
THR
156
n
155
THR
156
H
TRP
157
n
156
TRP
157
H
ASN
162
n
157
ASN
162
H
SER
163
n
158
SER
163
H
GLY
164
n
159
GLY
164
H
SER
165
n
160
SER
165
H
LEU
166
n
161
LEU
166
H
SER
167
n
162
SER
167
H
SER
168
n
163
SER
168
H
GLY
169
n
164
GLY
169
H
VAL
171
n
165
VAL
171
H
HIS
172
n
166
HIS
172
H
THR
173
n
167
THR
173
H
PHE
174
n
168
PHE
174
H
PRO
175
n
169
PRO
175
H
ALA
176
n
170
ALA
176
H
VAL
177
n
171
VAL
177
H
LEU
178
n
172
LEU
178
H
GLN
179
n
173
GLN
179
H
SER
180
n
174
SER
180
H
ASP
183
n
175
ASP
183
H
LEU
184
n
176
LEU
184
H
TYR
185
n
177
TYR
185
H
THR
186
n
178
THR
186
H
LEU
187
n
179
LEU
187
H
SER
188
n
180
SER
188
H
SER
189
n
181
SER
189
H
SER
190
n
182
SER
190
H
VAL
191
n
183
VAL
191
H
THR
192
n
184
THR
192
H
VAL
193
n
185
VAL
193
H
THR
194
n
186
THR
194
H
SER
195
n
187
SER
195
H
SER
196
n
188
SER
196
H
THR
198
n
189
THR
198
H
TRP
199
n
190
TRP
199
H
PRO
200
n
191
PRO
200
H
SER
202
n
192
SER
202
H
GLN
203
n
193
GLN
203
H
SER
204
n
194
SER
204
H
ILE
205
n
195
ILE
205
H
THR
206
n
196
THR
206
H
CYS
208
n
197
CYS
208
H
ASN
209
n
198
ASN
209
H
VAL
210
n
199
VAL
210
H
ALA
211
n
200
ALA
211
H
HIS
212
n
201
HIS
212
H
PRO
213
n
202
PRO
213
H
ALA
214
n
203
ALA
214
H
SER
215
n
204
SER
215
H
SER
216
n
205
SER
216
H
THR
217
n
206
THR
217
H
LYS
218
n
207
LYS
218
H
VAL
219
n
208
VAL
219
H
ASP
220
n
209
ASP
220
H
LYS
221
n
210
LYS
221
H
LYS
222
n
211
LYS
222
H
ILE
223
n
212
ILE
223
H
GLU
226
n
213
GLU
226
H
PRO
227
n
214
PRO
227
H
ARG
228
n
215
ARG
228
H
author_and_software_defined_assembly
PISA
2
dimeric
3250
-22
19390
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
SER
7
A
O
SER
7
L
N
SER
22
A
N
SER
22
L
O
CYS
23
A
O
CYS
23
L
N
PHE
71
A
N
PHE
75
L
O
THR
74
A
O
THR
78
L
N
SER
63
A
N
SER
67
L
N
LEU
11
A
N
LEU
11
L
O
LYS
103
A
O
LYS
107
L
N
LEU
104
A
N
LEU
108
L
O
ALA
84
A
O
ALA
88
L
O
GLN
89
A
O
GLN
93
L
N
HIS
34
A
N
HIS
38
L
O
GLN
37
A
O
GLN
41
L
N
LYS
45
A
N
LYS
49
L
N
TYR
49
A
N
TYR
53
L
O
ASN
53
A
O
ASN
57
L
N
PHE
118
A
N
PHE
122
L
O
VAL
133
A
O
VAL
137
L
N
LEU
136
A
N
LEU
140
L
O
MET
175
A
O
MET
179
L
O
THR
178
A
O
THR
182
L
N
LEU
160
A
N
LEU
164
L
O
SER
153
A
O
SER
157
L
N
ILE
150
A
N
ILE
154
L
N
LYS
149
A
N
LYS
153
L
O
THR
193
A
O
THR
197
L
O
ALA
196
A
O
ALA
200
L
N
ILE
205
A
N
ILE
209
H
O
SER
7
B
O
SER
7
H
N
THR
21
B
N
THR
21
H
N
CYS
22
B
N
CYS
22
H
O
VAL
78
B
O
VAL
80
H
N
LYS
81
B
N
LYS
83
H
O
LYS
68
B
O
LYS
70
H
N
ARG
58
B
N
ARG
60
H
O
HIS
50
B
O
HIS
52
H
N
GLN
39
B
N
GLN
41
H
O
THR
89
B
O
THR
94
H
N
GLN
94
B
N
GLN
99
H
O
TYR
102
B
O
TYR
104
H
N
ARG
58
B
N
ARG
60
H
O
HIS
50
B
O
HIS
52
H
N
GLN
39
B
N
GLN
41
H
O
THR
89
B
O
THR
94
H
N
TYR
90
B
N
TYR
95
H
O
THR
107
B
O
THR
109
H
O
THR
110
B
O
THR
112
H
N
LEU
12
B
N
LEU
12
H
O
LEU
124
B
O
LEU
126
H
N
GLY
141
B
N
GLY
141
H
O
TYR
147
B
O
TYR
147
H
N
TYR
185
B
N
TYR
177
H
N
SER
190
B
N
SER
182
H
O
HIS
172
B
O
HIS
166
H
O
LEU
124
B
O
LEU
126
H
N
GLY
141
B
N
GLY
141
H
O
TYR
147
B
O
TYR
147
H
N
TYR
185
B
N
TYR
177
H
N
THR
186
B
N
THR
178
H
O
VAL
177
B
O
VAL
171
H
O
THR
156
B
O
THR
155
H
N
ASN
209
B
N
ASN
198
H
N
HIS
212
B
N
HIS
201
H
O
THR
217
B
O
THR
206
1
L
L
GLN
PRO
42
43
146.05
1
L
TYR
140
0.075
SIDE CHAIN
1
-10.22
1.60
110.90
100.68
L
L
L
CG1
CB
CG2
VAL
VAL
VAL
13
13
13
N
1
-4.44
0.50
120.30
115.86
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
18
18
18
N
1
5.48
0.80
106.30
111.78
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
35
35
35
N
1
-5.06
0.80
107.30
102.24
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
35
35
35
N
1
6.80
1.10
117.90
124.70
L
L
L
CD1
CG
CD2
TYR
TYR
TYR
49
49
49
N
1
-5.33
0.60
121.00
115.67
L
L
L
CB
CG
CD1
TYR
TYR
TYR
49
49
49
N
1
-4.83
0.80
121.30
116.47
L
L
L
CG
CD1
CE1
TYR
TYR
TYR
49
49
49
N
1
3.69
0.50
120.30
123.99
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
50
50
50
N
1
-4.50
0.50
120.30
115.80
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
N
1
-10.71
1.50
110.50
99.79
L
L
L
N
CA
CB
SER
SER
SER
56
56
56
N
1
10.06
1.10
114.20
124.26
L
L
L
CA
CB
SG
CYS
CYS
CYS
88
88
88
N
1
-3.11
0.50
120.30
117.19
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
108
108
108
N
1
8.38
1.10
114.20
122.58
L
L
L
CA
CB
SG
CYS
CYS
CYS
134
134
134
N
1
-11.14
1.60
110.90
99.76
L
L
L
CG1
CB
CG2
VAL
VAL
VAL
146
146
146
N
1
5.05
0.80
106.30
111.35
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
148
148
148
N
1
-5.33
0.80
107.30
101.97
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
148
148
148
N
1
6.16
0.90
133.90
140.06
L
L
L
CG
CD2
CE3
TRP
TRP
TRP
148
148
148
N
1
7.14
0.80
106.30
113.44
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
163
163
163
N
1
-6.11
0.80
107.30
101.19
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
163
163
163
N
1
-4.66
0.60
121.00
116.34
L
L
L
CB
CG
CD2
TYR
TYR
TYR
186
186
186
N
1
-3.05
0.50
120.30
117.25
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
188
188
188
N
1
10.06
1.60
122.70
132.76
H
H
H
O
C
N
SER
SER
LEU
19
19
20
Y
1
-5.03
0.60
121.00
115.97
H
H
H
CB
CG
CD2
TYR
TYR
TYR
32
32
32
N
1
6.63
1.10
117.90
124.53
H
H
H
CD1
CG
CD2
TYR
TYR
TYR
32
32
32
N
1
-5.07
0.80
121.30
116.23
H
H
H
CG
CD1
CE1
TYR
TYR
TYR
32
32
32
N
1
6.81
0.80
106.30
113.11
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
36
36
36
N
1
-6.47
1.00
110.10
103.63
H
H
H
CG
CD1
NE1
TRP
TRP
TRP
36
36
36
N
1
-5.58
0.80
107.30
101.72
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
36
36
36
N
1
5.29
0.80
106.30
111.59
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
47
47
47
N
1
-4.99
0.80
107.30
102.31
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
47
47
47
N
1
-8.60
1.30
127.00
118.40
H
H
H
CB
CG
CD1
TRP
TRP
TRP
53
53
53
N
1
-6.93
1.10
130.40
123.47
H
H
H
NE1
CE2
CZ2
TRP
TRP
TRP
53
53
53
N
1
-5.60
0.80
107.30
101.70
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
53
53
53
N
1
-4.56
0.60
121.00
116.44
H
H
H
CB
CG
CD1
TYR
TYR
TYR
59
59
59
N
1
3.00
0.50
120.30
123.30
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
1
-11.76
1.80
114.00
102.24
H
H
H
CA
CB
SG
CYS
CYS
CYS
92
92
92
N
1
13.78
2.20
113.40
127.18
H
H
H
CA
CB
CG
GLU
GLU
GLU
95
95
95
N
1
5.64
0.80
106.30
111.94
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
103
103
103
N
1
-15.85
2.50
113.10
97.25
H
H
H
N
CA
C
GLY
GLY
GLY
129
129
129
N
1
-13.44
2.20
117.20
103.76
H
H
H
CA
C
N
GLY
GLY
SER
135
135
136
Y
1
5.41
0.80
106.30
111.71
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
157
157
157
N
1
-5.21
0.80
107.30
102.09
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
157
157
157
N
1
-11.84
1.90
111.40
99.56
H
H
H
CB
CA
C
VAL
VAL
VAL
171
171
171
N
1
6.40
0.80
106.30
112.70
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
199
199
199
N
1
-5.03
0.80
107.30
102.27
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
199
199
199
N
1
7.18
0.90
118.30
125.48
H
H
H
CB
CG
OD1
ASP
ASP
ASP
220
220
220
N
1
L
L
NE2
CD2
HIS
HIS
189
189
-0.073
0.011
1.373
1.300
N
1
H
H
NE2
CD2
HIS
HIS
212
212
-0.070
0.011
1.373
1.303
N
1
L
PRO
8
-69.98
-179.43
1
L
ASP
28
36.87
37.61
1
L
PHE
32
-95.98
56.71
1
L
ARG
50
38.16
63.36
1
L
SER
51
65.87
-39.79
1
L
ASP
60
-66.19
30.21
1
L
ARG
68
60.29
-86.10
1
L
VAL
78
-69.62
95.45
1
L
ASP
81
-89.86
42.30
1
L
ALA
84
178.97
-171.63
1
L
SER
91
-143.61
31.99
1
L
PRO
119
-40.62
153.80
1
L
ASN
138
40.19
90.93
1
L
TYR
173
-117.51
-130.41
1
L
SER
174
151.40
153.32
1
L
HIS
198
-161.75
109.85
1
L
LYS
199
8.58
-55.76
1
L
ASN
210
-100.34
-156.92
1
H
PRO
14
-57.38
-166.56
1
H
SER
15
59.46
-30.73
1
H
LEU
29
-74.97
35.80
1
H
SER
41
-53.34
107.85
1
H
LYS
43
175.71
-165.68
1
H
ASP
54
-87.84
36.04
1
H
ASP
83
-124.07
-147.68
1
H
GLU
95
7.74
43.08
1
H
TYR
97
-152.84
-33.60
1
H
SER
112
-172.42
143.22
1
H
THR
116
-6.10
83.77
1
H
CYS
128
58.17
143.78
1
H
ASP
130
-58.78
175.05
1
H
SER
136
-106.74
47.15
1
H
SER
137
-102.90
-105.41
1
H
VAL
138
89.47
117.80
1
H
GLN
179
-89.78
-99.47
1
H
ASP
183
65.05
-19.67
1
H
ALA
214
-69.57
3.91
1
H
SER
215
-147.86
-9.93
0.19
0.19
2.8
1
2.8
0
3291
0
0
3291
0.019
4.05
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
IGG2A FAB FRAGMENT (50.1)
MAJOR ANTIGEN-INDUCED DOMAIN REARRANGEMENTS IN AN ANTIBODY
1
N
N
2
N
N
L
GLU
79
A
GLU
83
HELX_P
L
VAL
83
A
VAL
87
5
1
5
L
SER
121
A
SER
125
HELX_P
L
SER
127
A
SER
131
1
2
7
L
LYS
183
A
LYS
187
HELX_P
L
ARG
188
A
ARG
192
1
3
6
H
LEU
63
B
LEU
65
HELX_P
H
SER
65
B
SER
67
5
4
3
H
ASP
83
B
ASP
88
HELX_P
H
ASP
86
B
ASP
91
5
5
4
disulf
1.992
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
92
1_555
disulf
2.027
L
CYS
134
A
SG
CYS
138
1_555
L
CYS
194
A
SG
CYS
198
1_555
disulf
1.955
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
97
1_555
disulf
2.014
H
CYS
142
B
SG
CYS
142
1_555
H
CYS
208
B
SG
CYS
197
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-14.95
L
ASN
76
A
ASN
80
1
L
PRO
77
A
PRO
81
14.67
L
ASP
94
A
ASP
98
1
L
PRO
95
A
PRO
99
-11.37
L
TYR
140
A
TYR
144
1
L
PRO
141
A
PRO
145
0.88
H
PHE
148
B
PHE
148
1
H
PRO
149
B
PRO
149
-11.95
H
GLU
150
B
GLU
150
1
H
PRO
151
B
PRO
151
-0.20
H
TRP
199
B
TRP
190
1
H
PRO
200
B
PRO
191
7.28
CAA10344
EMBL
1
1
AJ131289
ELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTIN
PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
GCAM_MOUSE
UNP
2
1
P01865
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI
TCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISW
FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEE
MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHT
TKSFSRTPGLDLDDVCAEAQDGELDGLWTTITIFISLFLLSVCYSASVTLFKVKWIFSSVVELKQTISPDYRNMIGQGA
3
215
1GGC
3
211
AJ131289
L
1
3
215
1
100
1GGC
114
228
P01865
H
2
116
215
1
MET
CONFLICT
LEU
4
1GGC
L
AJ131289
EMBL
4
4
1
THR
CONFLICT
SER
7
1GGC
L
AJ131289
EMBL
7
7
1
ALA
CONFLICT
GLY
9
1GGC
L
AJ131289
EMBL
9
9
1
ASN
CONFLICT
SER
27
1GGC
A
L
AJ131289
EMBL
28
28
1
ARG
CONFLICT
ASP
27
1GGC
C
L
AJ131289
EMBL
31
30
1
TYR
CONFLICT
ASP
28
1GGC
L
AJ131289
EMBL
32
32
1
MET
CONFLICT
LEU
33
1GGC
L
AJ131289
EMBL
37
37
1
ALA
CONFLICT
PRO
40
1GGC
L
AJ131289
EMBL
44
44
1
ALA
CONFLICT
SER
51
1GGC
L
AJ131289
EMBL
55
55
1
GLU
CONFLICT
ILE
55
1GGC
L
AJ131289
EMBL
59
59
1
ALA
CONFLICT
ASP
60
1GGC
L
AJ131289
EMBL
64
64
1
PHE
CONFLICT
TYR
87
1GGC
L
AJ131289
EMBL
91
91
1
ARG
CONFLICT
GLN
90
1GGC
L
AJ131289
EMBL
94
94
1
VAL
CONFLICT
ASP
94
1GGC
L
AJ131289
EMBL
98
98
1
TRP
CONFLICT
LEU
96
1GGC
L
AJ131289
EMBL
100
100
1
GLY
CONFLICT
ALA
100
1GGC
L
AJ131289
EMBL
104
104
4
6
4
4
4
5
6
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
LEU
4
A
LEU
4
L
SER
7
A
SER
7
L
ALA
19
A
ALA
19
L
ALA
25
A
ALA
25
L
ASP
70
A
ASP
74
L
ILE
75
A
ILE
79
L
PHE
62
A
PHE
66
L
SER
67
A
SER
71
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
102
A
THR
106
L
ILE
106
A
ILE
110
L
ALA
84
A
ALA
88
L
GLN
90
A
GLN
94
L
LEU
33
A
LEU
37
L
GLN
38
A
GLN
42
L
LYS
45
A
LYS
49
L
TYR
49
A
TYR
53
L
ASN
53
A
ASN
57
L
LEU
54
A
LEU
58
L
THR
114
A
THR
118
L
PHE
118
A
PHE
122
L
GLY
129
A
GLY
133
L
ASN
137
A
ASN
141
L
MET
175
A
MET
179
L
THR
182
A
THR
186
L
VAL
159
A
VAL
163
L
TRP
163
A
TRP
167
L
SER
153
A
SER
157
L
GLU
154
A
GLU
158
L
ASN
145
A
ASN
149
L
ILE
150
A
ILE
154
L
TYR
192
A
TYR
196
L
THR
197
A
THR
201
L
ILE
205
A
ILE
209
L
PHE
209
A
PHE
213
H
GLN
3
B
GLN
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
GLN
77
B
GLN
79
H
ILE
82
B
ILE
84
H
LEU
67
B
LEU
69
H
ASP
72
B
ASP
74
H
LYS
57
B
LYS
59
H
TYR
59
B
TYR
61
H
GLU
46
B
GLU
48
H
PHE
52
B
PHE
54
H
GLY
35
B
GLY
35
H
PRO
40
B
PRO
42
H
ALA
88
B
ALA
93
H
GLN
94
B
GLN
99
H
TYR
102
B
TYR
104
H
TRP
103
B
TRP
105
H
LYS
57
B
LYS
59
H
TYR
59
B
TYR
61
H
GLU
46
B
GLU
48
H
PHE
52
B
PHE
54
H
GLY
35
B
GLY
35
H
PRO
40
B
PRO
42
H
ALA
88
B
ALA
93
H
GLN
94
B
GLN
99
H
THR
107
B
THR
109
H
VAL
111
B
VAL
113
H
ILE
11
B
ILE
11
H
LEU
12
B
LEU
12
H
SER
120
B
SER
122
H
LEU
124
B
LEU
126
H
THR
139
B
THR
139
H
TYR
147
B
TYR
147
H
TYR
185
B
TYR
177
H
THR
192
B
THR
184
H
VAL
171
B
VAL
165
H
THR
173
B
THR
167
H
SER
120
B
SER
122
H
LEU
124
B
LEU
126
H
THR
139
B
THR
139
H
TYR
147
B
TYR
147
H
TYR
185
B
TYR
177
H
THR
192
B
THR
184
H
VAL
177
B
VAL
171
H
LEU
178
B
LEU
172
H
THR
153
B
THR
153
H
TRP
157
B
TRP
156
H
ILE
205
B
ILE
195
H
HIS
212
B
HIS
201
H
THR
217
B
THR
206
H
ILE
223
B
ILE
212
19
P 21 21 21