1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Berg, A. Vervoort, J. De Kok, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 261 432 442 10.1006/jmbi.1996.0474 8780784 Solution structure of the lipoyl domain of the 2-oxoglutarate dehydrogenase complex from Azotobacter vinelandii. 1996 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 234 148 Sequential 1H and 15N Nuclear Magnetic Resonance Assignments and Secondary Structure of the Lipoyl Domain of the 2-Oxoglutarate Dehydrogenase Complex from Azotobacter Vinelandii. Evidence for High Structural Similarity with the Lipoyl Domain of the Pyruvate Dehydrogenase Complex 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8353.437 E2, THE DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 2.3.1.61 LIPOYL DOMAIN, RESIDUES 1-79 1 man polymer E2 no no AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Azotobacter Escherichia sample 354 Azotobacter vinelandii 562 Escherichia coli pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conf repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1997-01-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1996-01-16 REL REL 25 BRUNGER refinement X-PLOR 3.1 ALA 1 n 1 ALA 1 A ILE 2 n 2 ILE 2 A ASP 3 n 3 ASP 3 A ILE 4 n 4 ILE 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 ALA 6 A PRO 7 n 7 PRO 7 A THR 8 n 8 THR 8 A PHE 9 n 9 PHE 9 A PRO 10 n 10 PRO 10 A GLU 11 n 11 GLU 11 A SER 12 n 12 SER 12 A ILE 13 n 13 ILE 13 A ALA 14 n 14 ALA 14 A ASP 15 n 15 ASP 15 A GLY 16 n 16 GLY 16 A THR 17 n 17 THR 17 A VAL 18 n 18 VAL 18 A ALA 19 n 19 ALA 19 A THR 20 n 20 THR 20 A TRP 21 n 21 TRP 21 A HIS 22 n 22 HIS 22 A LYS 23 n 23 LYS 23 A LYS 24 n 24 LYS 24 A PRO 25 n 25 PRO 25 A GLY 26 n 26 GLY 26 A GLU 27 n 27 GLU 27 A ALA 28 n 28 ALA 28 A VAL 29 n 29 VAL 29 A LYS 30 n 30 LYS 30 A ARG 31 n 31 ARG 31 A ASP 32 n 32 ASP 32 A GLU 33 n 33 GLU 33 A LEU 34 n 34 LEU 34 A ILE 35 n 35 ILE 35 A VAL 36 n 36 VAL 36 A ASP 37 n 37 ASP 37 A ILE 38 n 38 ILE 38 A GLU 39 n 39 GLU 39 A THR 40 n 40 THR 40 A ASP 41 n 41 ASP 41 A LYS 42 n 42 LYS 42 A VAL 43 n 43 VAL 43 A VAL 44 n 44 VAL 44 A MET 45 n 45 MET 45 A GLU 46 n 46 GLU 46 A VAL 47 n 47 VAL 47 A LEU 48 n 48 LEU 48 A ALA 49 n 49 ALA 49 A GLU 50 n 50 GLU 50 A ALA 51 n 51 ALA 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A VAL 54 n 54 VAL 54 A ILE 55 n 55 ILE 55 A ALA 56 n 56 ALA 56 A GLU 57 n 57 GLU 57 A ILE 58 n 58 ILE 58 A VAL 59 n 59 VAL 59 A LYS 60 n 60 LYS 60 A ASN 61 n 61 ASN 61 A GLU 62 n 62 GLU 62 A GLY 63 n 63 GLY 63 A ASP 64 n 64 ASP 64 A THR 65 n 65 THR 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A SER 68 n 68 SER 68 A GLY 69 n 69 GLY 69 A GLU 70 n 70 GLU 70 A LEU 71 n 71 LEU 71 A LEU 72 n 72 LEU 72 A GLY 73 n 73 GLY 73 A LYS 74 n 74 LYS 74 A LEU 75 n 75 LEU 75 A THR 76 n 76 THR 76 A GLU 77 n 77 GLU 77 A GLY 78 n 78 GLY 78 A GLY 79 n 79 GLY 79 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 2 A O ILE 2 A N LEU 75 A N LEU 75 A N THR 76 A N THR 76 A O VAL 54 A O VAL 54 A O GLY 53 A O GLY 53 A N VAL 29 A N VAL 29 A O MET 45 A O MET 45 A N ILE 38 A N ILE 38 A N GLU 39 A N GLU 39 A O THR 17 A O THR 17 A O GLY 16 A O GLY 16 A N VAL 66 A N VAL 66 1 A ARG 31 0.313 SIDE CHAIN 3 A ARG 31 0.166 SIDE CHAIN 4 A ARG 31 0.307 SIDE CHAIN 5 A ARG 31 0.267 SIDE CHAIN 6 A ARG 31 0.313 SIDE CHAIN 7 A ARG 31 0.313 SIDE CHAIN 8 A ARG 31 0.268 SIDE CHAIN 9 A ARG 31 0.298 SIDE CHAIN 10 A ARG 31 0.203 SIDE CHAIN 11 A ARG 31 0.271 SIDE CHAIN 12 A ARG 31 0.208 SIDE CHAIN 13 A ARG 31 0.191 SIDE CHAIN 14 A ARG 31 0.308 SIDE CHAIN 15 A ARG 31 0.093 SIDE CHAIN 16 A ARG 31 0.304 SIDE CHAIN 17 A ARG 31 0.316 SIDE CHAIN 18 A ARG 31 0.318 SIDE CHAIN 19 A ARG 31 0.276 SIDE CHAIN 20 A ARG 31 0.231 SIDE CHAIN 21 A ARG 31 0.317 SIDE CHAIN 22 A ARG 31 0.255 SIDE CHAIN 23 A ARG 31 0.209 SIDE CHAIN 24 A ARG 31 0.272 SIDE CHAIN 25 A ARG 31 0.318 SIDE CHAIN 1 A PRO 10 -77.99 -159.93 1 A ALA 19 -96.86 -72.98 1 A ASP 32 75.18 33.95 1 A LEU 34 -42.98 156.97 1 A ILE 35 -139.11 -38.17 1 A THR 40 -107.54 -162.44 1 A LYS 42 -142.79 26.16 1 A ALA 51 166.90 148.28 1 A ALA 56 -95.13 -64.43 1 A GLU 57 -179.17 146.32 2 A GLU 11 -85.33 46.46 2 A SER 12 39.25 39.21 2 A ASP 15 163.74 -169.63 2 A ALA 19 -112.73 -73.14 2 A ARG 31 -42.90 156.23 2 A LEU 34 -42.90 153.56 2 A ILE 35 -139.08 -38.51 2 A ALA 51 -175.45 122.32 2 A ASP 52 -55.14 170.93 2 A ALA 56 -101.72 -65.42 2 A VAL 66 -116.68 -154.66 3 A PRO 10 -78.10 -163.08 3 A ASP 15 174.80 -171.47 3 A VAL 18 -43.79 162.87 3 A ALA 19 -108.11 -75.17 3 A ASP 32 75.90 57.06 3 A LEU 34 -42.94 162.25 3 A ILE 35 -141.52 -49.49 3 A THR 40 -115.80 -167.48 3 A ALA 51 164.70 164.20 3 A ASP 52 -58.18 170.95 4 A THR 8 -44.17 108.02 4 A PRO 10 -78.18 -159.44 4 A ASP 15 166.60 -172.39 4 A ALA 19 -108.96 -76.41 4 A ASP 32 70.06 51.23 4 A ILE 35 -134.97 -43.07 4 A ALA 51 163.94 141.46 4 A ASP 52 -49.01 170.97 4 A ILE 55 -46.45 172.25 4 A GLU 57 -170.27 138.78 4 A GLU 77 -74.49 -169.42 5 A PRO 10 -78.06 -159.96 5 A ASP 15 171.31 -171.15 5 A VAL 18 -45.26 160.07 5 A ALA 19 -106.16 -73.06 5 A ARG 31 -42.73 150.03 5 A ASP 32 72.30 41.14 5 A LEU 34 -43.16 164.69 5 A ILE 35 -139.52 -46.07 5 A THR 40 -109.87 -161.23 5 A ASP 41 -42.80 -71.01 5 A ALA 51 -176.57 134.61 5 A ALA 56 -97.69 -68.79 5 A GLU 57 -176.02 133.08 6 A ASP 15 179.23 -174.45 6 A VAL 18 -44.45 161.26 6 A ALA 19 -106.65 -75.13 6 A LEU 34 -42.98 164.23 6 A ILE 35 -138.18 -47.72 6 A LYS 42 -158.48 28.91 6 A ALA 51 173.18 161.76 6 A ASP 52 -59.99 171.00 6 A ILE 55 -47.02 174.45 6 A GLU 57 177.45 138.00 7 A ILE 4 -105.78 72.67 7 A PRO 10 -78.02 -165.99 7 A SER 12 -42.89 -72.95 7 A ASP 15 -177.33 -171.84 7 A VAL 18 -46.00 168.87 7 A ALA 19 -113.22 -71.08 7 A HIS 22 -42.72 -70.12 7 A LEU 34 -43.13 164.89 7 A ILE 35 -142.56 -47.64 7 A ALA 51 178.86 155.12 7 A ALA 56 -105.08 -63.69 7 A GLU 57 -179.24 144.09 7 A SER 68 -65.16 97.22 8 A ASP 15 178.75 -169.08 8 A VAL 18 -49.41 169.28 8 A ALA 19 -114.69 -73.97 8 A HIS 22 -54.98 -72.24 8 A VAL 29 -129.95 -169.53 8 A ARG 31 -42.78 154.83 8 A LEU 34 -42.86 160.23 8 A ILE 35 -142.77 -43.95 8 A ASP 41 -42.78 -70.02 8 A ALA 51 171.58 132.33 8 A ASP 52 -47.42 170.93 8 A ALA 56 -103.22 -65.51 8 A GLU 57 172.66 141.35 9 A ASP 15 167.42 -171.82 9 A VAL 18 -47.98 168.64 9 A ALA 19 -113.13 -75.00 9 A ASP 32 75.99 56.37 9 A LEU 34 -42.80 151.63 9 A ILE 35 -137.84 -41.21 9 A LYS 42 -147.45 25.45 9 A ALA 51 179.13 150.07 9 A ASP 52 -55.35 170.93 9 A ALA 56 -97.37 -69.56 9 A GLU 57 -174.76 142.44 9 A GLU 77 -74.23 -72.33 10 A PRO 10 -78.03 -162.94 10 A ASP 15 -173.53 -173.59 10 A VAL 18 -45.25 168.41 10 A ALA 19 -113.65 -70.68 10 A HIS 22 -42.69 -70.41 10 A LEU 34 -42.58 151.54 10 A ILE 35 -142.04 -40.18 10 A THR 40 -128.31 -162.33 10 A LYS 42 -149.47 45.09 10 A ALA 51 173.38 154.39 10 A ALA 56 -104.33 -63.85 10 A LEU 72 -97.05 -70.51 10 A THR 76 -89.35 -157.74 11 A ASP 15 -178.35 -171.41 11 A VAL 18 -44.56 165.09 11 A ALA 19 -114.06 -73.12 11 A ASP 32 75.51 41.59 11 A LEU 34 -42.84 156.10 11 A ILE 35 -146.12 -39.12 11 A LYS 42 -148.37 30.66 11 A ALA 51 -178.57 138.20 11 A ASP 52 -58.50 170.95 11 A ALA 56 -103.43 -66.08 11 A THR 76 -97.72 -157.77 12 A PRO 10 -77.99 -159.65 12 A ASP 15 163.89 -169.09 12 A VAL 18 -49.08 159.73 12 A ALA 19 -104.35 -77.00 12 A ARG 31 -42.71 153.10 12 A ALA 51 173.54 134.78 12 A ASP 52 -54.25 171.02 12 A ALA 56 -101.42 -62.83 12 A GLU 57 -177.89 131.47 12 A LEU 72 -92.69 -69.05 12 A THR 76 -81.78 -157.83 12 A GLU 77 -57.94 174.09 13 A PRO 10 -78.04 -166.25 13 A VAL 18 -45.83 168.72 13 A ALA 19 -111.13 -74.34 13 A HIS 22 -42.95 -70.18 13 A LEU 34 -43.46 165.14 13 A ILE 35 -134.26 -47.13 13 A VAL 36 -171.99 144.01 13 A THR 40 -101.92 -151.91 13 A LYS 42 -149.48 17.78 13 A ALA 51 163.94 167.54 13 A ASP 52 -49.96 170.98 13 A ALA 56 -100.51 -66.31 13 A GLU 57 177.34 141.68 13 A VAL 59 -90.03 -67.52 13 A LEU 72 -93.92 -68.05 13 A THR 76 -106.55 -157.75 13 A GLU 77 -84.80 -82.00 14 A PRO 10 -78.08 -160.60 14 A VAL 18 -44.25 162.99 14 A ALA 19 -106.20 -75.47 14 A ASP 32 70.82 47.00 14 A LEU 34 -43.14 164.56 14 A ILE 35 -145.27 -42.56 14 A LYS 42 -142.97 48.76 14 A ALA 51 164.18 155.34 14 A GLU 57 -178.88 139.21 14 A LEU 72 -100.84 -71.12 15 A PRO 10 -77.97 -167.12 15 A ASP 15 178.91 -172.53 15 A ALA 19 -101.94 -76.81 15 A ASP 32 73.94 55.21 15 A LEU 34 -42.89 161.68 15 A ILE 35 -144.72 -42.56 15 A ALA 51 164.12 162.75 15 A ASP 52 -53.64 171.05 15 A ALA 56 -105.46 -67.21 15 A VAL 59 -97.16 -67.01 15 A GLU 77 -77.94 -148.81 16 A ASP 15 -176.67 -170.13 16 A ALA 19 -109.70 -73.86 16 A ASP 32 72.81 54.36 16 A LYS 42 -156.28 27.33 16 A ALA 51 -179.70 140.83 16 A ASP 52 -59.83 170.89 16 A ALA 56 -106.39 -63.70 16 A GLU 57 -170.41 136.43 16 A VAL 59 -90.18 -62.46 16 A THR 76 -104.87 -157.80 17 A PRO 10 -78.09 -165.22 17 A ASP 15 170.75 -170.76 17 A ALA 19 -100.52 -75.63 17 A HIS 22 -43.57 -71.46 17 A LEU 34 -42.97 161.51 17 A ILE 35 -149.90 -40.25 17 A THR 40 -126.35 -160.48 17 A LYS 42 -145.65 22.30 17 A ALA 51 164.34 157.23 17 A ALA 56 -102.88 -62.45 17 A GLU 57 173.27 161.05 18 A PRO 10 -78.07 -159.61 18 A ASP 15 176.42 -170.44 18 A VAL 18 -44.24 156.96 18 A ALA 19 -106.12 -74.90 18 A LEU 34 -42.81 150.93 18 A ILE 35 -139.49 -38.73 18 A THR 40 -106.64 -153.73 18 A ASP 41 -43.09 -71.53 18 A LYS 42 -143.88 36.90 18 A ALA 51 -177.08 141.73 18 A ASP 52 -57.93 170.93 18 A ALA 56 -97.66 -66.84 18 A GLU 57 -175.05 138.75 18 A GLU 77 -64.82 -177.90 19 A ASP 15 177.09 -171.09 19 A VAL 18 -48.14 168.97 19 A ALA 19 -111.10 -73.90 19 A HIS 22 -43.16 -70.80 19 A ASP 32 72.18 46.91 19 A LYS 42 -156.29 26.00 19 A MET 45 -128.05 -167.88 19 A ALA 51 166.57 142.99 19 A ASP 52 -54.84 170.98 19 A ALA 56 -95.56 -69.41 19 A VAL 59 -90.53 -66.77 19 A VAL 66 -121.52 -169.70 20 A ASP 15 167.96 -169.25 20 A ALA 19 -118.91 -74.19 20 A LEU 34 -43.25 162.37 20 A ILE 35 -135.49 -48.05 20 A ALA 51 171.87 154.01 20 A ALA 56 -104.45 -67.19 20 A GLU 77 -66.02 -172.73 21 A PRO 10 -78.04 -169.64 21 A ASP 15 166.92 -174.12 21 A VAL 18 -43.83 159.49 21 A ALA 19 -111.99 -71.02 21 A ASP 32 72.27 52.04 21 A LEU 34 -42.74 162.31 21 A ILE 35 -140.84 -42.03 21 A LYS 42 -141.62 33.25 21 A ALA 56 -101.67 -67.42 21 A THR 76 -107.04 -157.56 22 A SER 12 -42.82 -72.93 22 A ALA 14 -142.09 44.83 22 A ASP 15 168.74 -169.91 22 A ALA 19 -113.85 -75.34 22 A ARG 31 -42.82 151.34 22 A LEU 34 -42.76 163.44 22 A ILE 35 -147.18 -43.51 22 A THR 40 -124.24 -163.94 22 A LYS 42 -141.84 48.34 22 A ALA 51 165.54 140.80 22 A ASP 52 -54.31 170.92 22 A ALA 56 -99.66 -65.55 22 A GLU 57 -173.10 132.77 22 A VAL 66 -114.78 -161.95 23 A PRO 10 -78.42 -159.44 23 A ALA 14 -143.89 13.37 23 A ASP 15 172.23 -172.27 23 A ALA 19 -112.76 -73.27 23 A ASP 32 74.97 33.27 23 A LEU 34 -43.11 150.94 23 A ALA 51 167.06 142.93 23 A ASP 52 -58.63 170.96 23 A ALA 56 -95.55 -69.57 23 A GLU 57 -172.27 142.48 24 A ASP 15 173.64 -172.03 24 A VAL 18 -43.96 165.74 24 A ALA 19 -117.52 -72.80 24 A ARG 31 -42.82 152.32 24 A LEU 34 -42.96 163.34 24 A ILE 35 -149.50 -43.27 24 A LYS 42 -148.22 49.56 24 A ALA 51 174.49 124.96 24 A ASP 52 -59.43 170.91 24 A ALA 56 -108.52 -65.86 24 A THR 76 -86.79 -157.65 24 A GLU 77 -71.36 -90.57 25 A ASP 15 169.96 -171.45 25 A ALA 19 -99.84 -76.84 25 A ASP 32 73.84 38.28 25 A ILE 35 -132.62 -42.86 25 A THR 40 -97.27 -150.35 25 A ASP 41 -42.80 -70.05 25 A LYS 42 -145.10 25.19 25 A ALA 51 170.49 150.37 25 A ALA 56 -103.51 -67.02 25 A GLU 77 -59.16 -72.91 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 E2, THE DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE 2-OXOGLUTARATE DEHYDROGENASE COMPLEX FROM AZOTOBACTER VINELAND II, NMR, 25 STRUCTURES 1 Y N ACYLTRANSFERASE GLYCOLYSIS, TRANSFERASE, ACYLTRANSFERASE, LIPOYL ODO2_AZOVI UNP 1 1 P20708 MAIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG AATAAPAAAPAPAAAAPAAAEAPILSPAARKIAEENAIAADSITGTGKGGRVTKEDAVAAAEAKKSAPAGQPAPAATAAP LFAAGDRVEKRVPMTRLRAKVAERLVEAQSSMAMLTTFNEVNMKPVMELRAKYKDLFEKTHNGVRLGFMSFFVKAAVEAL KRQPGVNASIDGNDIVYHGYQDIGVAVSSDRGLVVPVLRNAEFMSLAEIEGGINEFGKKAKAGKLTIEEMTGGTFTISNG GVFGSLLSTPIVNPPQTAILGMHKIQERPMAVNGQVVILPMMYLALSYDHRLIDGKEAVTFLVTMKDLLEDPARLLLDV 2 80 1GHK 1 79 P20708 A 1 1 79 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 2 A ILE 2 A LYS 5 A LYS 5 A LEU 71 A LEU 71 A THR 76 A THR 76 A GLY 53 A GLY 53 A ILE 58 A ILE 58 A GLU 27 A GLU 27 A VAL 29 A VAL 29 A VAL 44 A VAL 44 A LEU 48 A LEU 48 A LEU 34 A LEU 34 A GLU 39 A GLU 39 A GLY 16 A GLY 16 A TRP 21 A TRP 21 A ASP 64 A ASP 64 A VAL 66 A VAL 66 1 P 1