0.013510
0.000000
0.000000
0.000000
0.013876
0.000000
0.000000
0.000000
0.018525
0.00000
0.00000
0.00000
Ikuta, M.
Nishimura, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
74.020
72.069
53.982
C19 H22 N6 O2
366.417
1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA
N'-(PYRROLIDINO[2,1-B]ISOINDOLIN-4-ON-8-YL)-N-(5-(PYRROLIDIN-2-YL)PYRAZOL-3-YL)UREA
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
N
2
S
C
Y
3
N
C
Y
4
N
C
N
5
N
N
N
6
N
C
N
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
N
N
11
N
C
N
12
N
C
N
13
N
O
Y
14
N
C
N
15
N
C
N
16
N
N
N
17
N
O
Y
18
N
C
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
N
N
23
S
C
N
24
N
C
N
25
N
N
N
26
N
C
N
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
Y
8
N
sing
Y
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
Y
17
N
doub
N
18
N
sing
Y
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
Y
33
N
sing
Y
34
N
doub
Y
35
N
doub
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
27548
27554
10.1074/jbc.M102060200
11335721
Crystallographic approach to identification of cyclin-dependent kinase 4 (CDK4)-specific inhibitors by using CDK4 mimic CDK2 protein.
2002
10.2210/pdb1gij/pdb
pdb_00001gij
294
1
IMAGE PLATE
2000-07-07
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL-6B
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
33925.359
CELL DIVISION PROTEIN KINASE 2
2.7.1.37
F82H, L83V, K89T
1
man
polymer
366.417
1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA
1
syn
non-polymer
18.015
water
76
nat
water
CYCLIN DEPENDENT KINASE 2
no
no
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
9606
Homo sapiens
7108
Spodoptera frugiperda
1
2.12
42.00
VAPOR DIFFUSION, HANGING DROP
7.2
HEPES, sodium chloride, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 278K
278
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2002-02-06
1
1
2008-04-26
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1GIH contains the wild type protein, with different ligand
1GII contains the same mutant protein, without the ligand
RCSB
Y
RCSB
2001-02-06
REL
2PU
1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA
HOH
water
2PU
501
2
2PU
2PU
501
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
HOH
620
3
HOH
HOH
620
A
HOH
621
3
HOH
HOH
621
A
HOH
622
3
HOH
HOH
622
A
HOH
623
3
HOH
HOH
623
A
HOH
624
3
HOH
HOH
624
A
HOH
625
3
HOH
HOH
625
A
HOH
626
3
HOH
HOH
626
A
HOH
627
3
HOH
HOH
627
A
HOH
628
3
HOH
HOH
628
A
HOH
629
3
HOH
HOH
629
A
HOH
630
3
HOH
HOH
630
A
HOH
631
3
HOH
HOH
631
A
HOH
632
3
HOH
HOH
632
A
HOH
633
3
HOH
HOH
633
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
636
3
HOH
HOH
636
A
HOH
637
3
HOH
HOH
637
A
HOH
638
3
HOH
HOH
638
A
HOH
639
3
HOH
HOH
639
A
HOH
640
3
HOH
HOH
640
A
HOH
641
3
HOH
HOH
641
A
HOH
642
3
HOH
HOH
642
A
HOH
643
3
HOH
HOH
643
A
HOH
644
3
HOH
HOH
644
A
HOH
645
3
HOH
HOH
645
A
HOH
646
3
HOH
HOH
646
A
HOH
647
3
HOH
HOH
647
A
HOH
648
3
HOH
HOH
648
A
HOH
649
3
HOH
HOH
649
A
HOH
650
3
HOH
HOH
650
A
HOH
651
3
HOH
HOH
651
A
HOH
652
3
HOH
HOH
652
A
HOH
653
3
HOH
HOH
653
A
HOH
654
3
HOH
HOH
654
A
HOH
655
3
HOH
HOH
655
A
HOH
656
3
HOH
HOH
656
A
HOH
657
3
HOH
HOH
657
A
HOH
658
3
HOH
HOH
658
A
HOH
659
3
HOH
HOH
659
A
HOH
660
3
HOH
HOH
660
A
HOH
661
3
HOH
HOH
661
A
HOH
662
3
HOH
HOH
662
A
HOH
663
3
HOH
HOH
663
A
HOH
664
3
HOH
HOH
664
A
HOH
665
3
HOH
HOH
665
A
HOH
666
3
HOH
HOH
666
A
HOH
667
3
HOH
HOH
667
A
HOH
668
3
HOH
HOH
668
A
HOH
669
3
HOH
HOH
669
A
HOH
670
3
HOH
HOH
670
A
HOH
671
3
HOH
HOH
671
A
HOH
672
3
HOH
HOH
672
A
HOH
673
3
HOH
HOH
673
A
HOH
674
3
HOH
HOH
674
A
HOH
675
3
HOH
HOH
675
A
HOH
676
3
HOH
HOH
676
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
ASN
3
n
3
ASN
3
A
PHE
4
n
4
PHE
4
A
GLN
5
n
5
GLN
5
A
LYS
6
n
6
LYS
6
A
VAL
7
n
7
VAL
7
A
GLU
8
n
8
GLU
8
A
LYS
9
n
9
LYS
9
A
ILE
10
n
10
ILE
10
A
GLY
11
n
11
GLY
11
A
GLU
12
n
12
GLU
12
A
GLY
13
n
13
GLY
13
A
THR
14
n
14
THR
14
A
TYR
15
n
15
TYR
15
A
GLY
16
n
16
GLY
16
A
VAL
17
n
17
VAL
17
A
VAL
18
n
18
VAL
18
A
TYR
19
n
19
TYR
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
ARG
22
n
22
ARG
22
A
ASN
23
n
23
ASN
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
LYS
34
n
34
LYS
34
A
ILE
35
n
35
ILE
35
A
ARG
36
n
36
ARG
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
n
47
47
A
ALA
48
n
48
ALA
48
A
ILE
49
n
49
ILE
49
A
ARG
50
n
50
ARG
50
A
GLU
51
n
51
GLU
51
A
ILE
52
n
52
ILE
52
A
SER
53
n
53
SER
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
LYS
56
n
56
LYS
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
HIS
60
n
60
HIS
60
A
PRO
61
n
61
PRO
61
A
ASN
62
n
62
ASN
62
A
ILE
63
n
63
ILE
63
A
VAL
64
n
64
VAL
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
LEU
67
n
67
LEU
67
A
ASP
68
n
68
ASP
68
A
VAL
69
n
69
VAL
69
A
ILE
70
n
70
ILE
70
A
HIS
71
n
71
HIS
71
A
THR
72
n
72
THR
72
A
GLU
73
n
73
GLU
73
A
ASN
74
n
74
ASN
74
A
LYS
75
n
75
LYS
75
A
LEU
76
n
76
LEU
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
VAL
79
n
79
VAL
79
A
PHE
80
n
80
PHE
80
A
GLU
81
n
81
GLU
81
A
HIS
82
n
82
HIS
82
A
VAL
83
n
83
VAL
83
A
HIS
84
n
84
HIS
84
A
GLN
85
n
85
GLN
85
A
ASP
86
n
86
ASP
86
A
LEU
87
n
87
LEU
87
A
LYS
88
n
88
LYS
88
A
THR
89
n
89
THR
89
A
PHE
90
n
90
PHE
90
A
MET
91
n
91
MET
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
LEU
96
n
96
LEU
96
A
THR
97
n
97
THR
97
A
GLY
98
n
98
GLY
98
A
ILE
99
n
99
ILE
99
A
PRO
100
n
100
PRO
100
A
LEU
101
n
101
LEU
101
A
PRO
102
n
102
PRO
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
LYS
105
n
105
LYS
105
A
SER
106
n
106
SER
106
A
TYR
107
n
107
TYR
107
A
LEU
108
n
108
LEU
108
A
PHE
109
n
109
PHE
109
A
GLN
110
n
110
GLN
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
GLN
113
n
113
GLN
113
A
GLY
114
n
114
GLY
114
A
LEU
115
n
115
LEU
115
A
ALA
116
n
116
ALA
116
A
PHE
117
n
117
PHE
117
A
CYS
118
n
118
CYS
118
A
HIS
119
n
119
HIS
119
A
SER
120
n
120
SER
120
A
HIS
121
n
121
HIS
121
A
ARG
122
n
122
ARG
122
A
VAL
123
n
123
VAL
123
A
LEU
124
n
124
LEU
124
A
HIS
125
n
125
HIS
125
A
ARG
126
n
126
ARG
126
A
ASP
127
n
127
ASP
127
A
LEU
128
n
128
LEU
128
A
LYS
129
n
129
LYS
129
A
PRO
130
n
130
PRO
130
A
GLN
131
n
131
GLN
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
LEU
134
n
134
LEU
134
A
ILE
135
n
135
ILE
135
A
ASN
136
n
136
ASN
136
A
THR
137
n
137
THR
137
A
GLU
138
n
138
GLU
138
A
GLY
139
n
139
GLY
139
A
ALA
140
n
140
ALA
140
A
ILE
141
n
141
ILE
141
A
LYS
142
n
142
LYS
142
A
LEU
143
n
143
LEU
143
A
ALA
144
n
144
ALA
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLY
147
n
147
GLY
147
A
LEU
148
n
148
LEU
148
A
ALA
149
n
149
ALA
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
VAL
164
n
164
VAL
164
A
THR
165
n
165
THR
165
A
LEU
166
n
166
LEU
166
A
TRP
167
n
167
TRP
167
A
TYR
168
n
168
TYR
168
A
ARG
169
n
169
ARG
169
A
ALA
170
n
170
ALA
170
A
PRO
171
n
171
PRO
171
A
GLU
172
n
172
GLU
172
A
ILE
173
n
173
ILE
173
A
LEU
174
n
174
LEU
174
A
LEU
175
n
175
LEU
175
A
GLY
176
n
176
GLY
176
A
CYS
177
n
177
CYS
177
A
LYS
178
n
178
LYS
178
A
TYR
179
n
179
TYR
179
A
TYR
180
n
180
TYR
180
A
SER
181
n
181
SER
181
A
THR
182
n
182
THR
182
A
ALA
183
n
183
ALA
183
A
VAL
184
n
184
VAL
184
A
ASP
185
n
185
ASP
185
A
ILE
186
n
186
ILE
186
A
TRP
187
n
187
TRP
187
A
SER
188
n
188
SER
188
A
LEU
189
n
189
LEU
189
A
GLY
190
n
190
GLY
190
A
CYS
191
n
191
CYS
191
A
ILE
192
n
192
ILE
192
A
PHE
193
n
193
PHE
193
A
ALA
194
n
194
ALA
194
A
GLU
195
n
195
GLU
195
A
MET
196
n
196
MET
196
A
VAL
197
n
197
VAL
197
A
THR
198
n
198
THR
198
A
ARG
199
n
199
ARG
199
A
ARG
200
n
200
ARG
200
A
ALA
201
n
201
ALA
201
A
LEU
202
n
202
LEU
202
A
PHE
203
n
203
PHE
203
A
PRO
204
n
204
PRO
204
A
GLY
205
n
205
GLY
205
A
ASP
206
n
206
ASP
206
A
SER
207
n
207
SER
207
A
GLU
208
n
208
GLU
208
A
ILE
209
n
209
ILE
209
A
ASP
210
n
210
ASP
210
A
GLN
211
n
211
GLN
211
A
LEU
212
n
212
LEU
212
A
PHE
213
n
213
PHE
213
A
ARG
214
n
214
ARG
214
A
ILE
215
n
215
ILE
215
A
PHE
216
n
216
PHE
216
A
ARG
217
n
217
ARG
217
A
THR
218
n
218
THR
218
A
LEU
219
n
219
LEU
219
A
GLY
220
n
220
GLY
220
A
THR
221
n
221
THR
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
GLU
224
n
224
GLU
224
A
VAL
225
n
225
VAL
225
A
VAL
226
n
226
VAL
226
A
TRP
227
n
227
TRP
227
A
PRO
228
n
228
PRO
228
A
GLY
229
n
229
GLY
229
A
VAL
230
n
230
VAL
230
A
THR
231
n
231
THR
231
A
SER
232
n
232
SER
232
A
MET
233
n
233
MET
233
A
PRO
234
n
234
PRO
234
A
ASP
235
n
235
ASP
235
A
TYR
236
n
236
TYR
236
A
LYS
237
n
237
LYS
237
A
PRO
238
n
238
PRO
238
A
SER
239
n
239
SER
239
A
PHE
240
n
240
PHE
240
A
PRO
241
n
241
PRO
241
A
LYS
242
n
242
LYS
242
A
TRP
243
n
243
TRP
243
A
ALA
244
n
244
ALA
244
A
ARG
245
n
245
ARG
245
A
GLN
246
n
246
GLN
246
A
ASP
247
n
247
ASP
247
A
PHE
248
n
248
PHE
248
A
SER
249
n
249
SER
249
A
LYS
250
n
250
LYS
250
A
VAL
251
n
251
VAL
251
A
VAL
252
n
252
VAL
252
A
PRO
253
n
253
PRO
253
A
PRO
254
n
254
PRO
254
A
LEU
255
n
255
LEU
255
A
ASP
256
n
256
ASP
256
A
GLU
257
n
257
GLU
257
A
ASP
258
n
258
ASP
258
A
GLY
259
n
259
GLY
259
A
ARG
260
n
260
ARG
260
A
SER
261
n
261
SER
261
A
LEU
262
n
262
LEU
262
A
LEU
263
n
263
LEU
263
A
SER
264
n
264
SER
264
A
GLN
265
n
265
GLN
265
A
MET
266
n
266
MET
266
A
LEU
267
n
267
LEU
267
A
HIS
268
n
268
HIS
268
A
TYR
269
n
269
TYR
269
A
ASP
270
n
270
ASP
270
A
PRO
271
n
271
PRO
271
A
ASN
272
n
272
ASN
272
A
LYS
273
n
273
LYS
273
A
ARG
274
n
274
ARG
274
A
ILE
275
n
275
ILE
275
A
SER
276
n
276
SER
276
A
ALA
277
n
277
ALA
277
A
LYS
278
n
278
LYS
278
A
ALA
279
n
279
ALA
279
A
ALA
280
n
280
ALA
280
A
LEU
281
n
281
LEU
281
A
ALA
282
n
282
ALA
282
A
HIS
283
n
283
HIS
283
A
PRO
284
n
284
PRO
284
A
PHE
285
n
285
PHE
285
A
PHE
286
n
286
PHE
286
A
GLN
287
n
287
GLN
287
A
ASP
288
n
288
ASP
288
A
VAL
289
n
289
VAL
289
A
THR
290
n
290
THR
290
A
LYS
291
n
291
LYS
291
A
PRO
292
n
292
PRO
292
A
VAL
293
n
293
VAL
293
A
PRO
294
n
294
PRO
294
A
HIS
295
n
295
HIS
295
A
LEU
296
n
296
LEU
296
A
ARG
297
n
297
ARG
297
A
LEU
298
n
298
LEU
298
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
13
A
N
GLY
13
A
O
GLY
16
A
O
GLY
16
A
O
ALA
21
A
O
ALA
21
A
N
VAL
30
A
N
VAL
30
A
N
ILE
35
A
N
ILE
35
A
O
LEU
76
A
O
LEU
76
A
O
VAL
79
A
O
VAL
79
A
N
LEU
67
A
N
LEU
67
A
O
GLN
85
A
O
GLN
85
A
N
ILE
135
A
N
ILE
135
A
N
LEU
134
A
N
LEU
134
A
O
LYS
142
A
O
LYS
142
1
A
LEU
37
A
LEU
37
1
Y
1
A
ASP
38
A
ASP
38
1
Y
1
A
THR
39
A
THR
39
1
Y
1
A
GLU
40
A
GLU
40
1
Y
1
A
THR
41
A
THR
41
1
Y
1
A
GLU
42
A
GLU
42
1
Y
1
A
GLY
43
A
GLY
43
1
Y
1
A
VAL
44
A
VAL
44
1
Y
1
A
PRO
45
A
PRO
45
1
Y
1
A
SER
46
A
SER
46
1
Y
1
A
THR
47
A
THR
47
1
Y
1
A
ARG
150
A
ARG
150
1
Y
1
A
ALA
151
A
ALA
151
1
Y
1
A
PHE
152
A
PHE
152
1
Y
1
A
GLY
153
A
GLY
153
1
Y
1
A
VAL
154
A
VAL
154
1
Y
1
A
PRO
155
A
PRO
155
1
Y
1
A
VAL
156
A
VAL
156
1
Y
1
A
ARG
157
A
ARG
157
1
Y
1
A
THR
158
A
THR
158
1
Y
1
A
TYR
159
A
TYR
159
1
Y
1
A
THR
160
A
THR
160
1
Y
1
A
HIS
161
A
HIS
161
1
Y
1
A
GLU
162
A
GLU
162
1
Y
1
A
VAL
163
A
VAL
163
1
Y
1
A
TYR
179
0.075
SIDE CHAIN
1
14.17
2.30
115.30
129.47
A
A
A
CA
CB
CG
LEU
LEU
LEU
32
32
32
N
1
8.42
0.90
118.30
126.72
A
A
A
CB
CG
OD1
ASP
ASP
ASP
270
270
270
N
1
-15.68
1.90
111.40
95.72
A
A
A
CB
CA
C
VAL
VAL
VAL
289
289
289
N
1
A
ARG
126
82.38
-25.29
1
A
TYR
179
-106.58
59.44
0.2860000
0.2280000
0.2420000
0.2390000
2.2
8.0
1379
58086
13844
92.7
1
2.0
2.2
8.0
76
2302
27
0
2199
.018
23.375
2.2
100.0
1GIJ
58086
14195
2.0
0.0600000
1
17.6
4.1
92.3
0.1710000
2.2
2.28
481
2.7
87.3
phasing
AMoRE
refinement
X-PLOR
98.0
data reduction
DENZO
data scaling
CCP4
HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR
1
N
N
2
N
N
3
N
N
A
ALA
48
A
ALA
48
HELX_P
A
GLU
57
A
GLU
57
1
1
10
A
LEU
87
A
LEU
87
HELX_P
A
SER
94
A
SER
94
1
2
8
A
PRO
100
A
PRO
100
HELX_P
A
HIS
121
A
HIS
121
1
3
22
A
LYS
129
A
LYS
129
HELX_P
A
GLN
131
A
GLN
131
5
4
3
A
ALA
170
A
ALA
170
HELX_P
A
LEU
175
A
LEU
175
1
5
6
A
THR
182
A
THR
182
HELX_P
A
ARG
199
A
ARG
199
1
6
18
A
SER
207
A
SER
207
HELX_P
A
GLY
220
A
GLY
220
1
7
14
A
GLY
229
A
GLY
229
HELX_P
A
MET
233
A
MET
233
5
8
5
A
ASP
247
A
ASP
247
HELX_P
A
VAL
252
A
VAL
252
1
9
6
A
ASP
256
A
ASP
256
HELX_P
A
LEU
267
A
LEU
267
1
10
12
A
SER
276
A
SER
276
HELX_P
A
ALA
282
A
ALA
282
1
11
7
A
HIS
283
A
HIS
283
HELX_P
A
VAL
289
A
VAL
289
5
12
7
TRANSFERASE
protein kinase, cell cycle, inhibition, TRANSFERASE
A
PRO
253
A
PRO
253
1
A
PRO
254
A
PRO
254
0.18
CDK2_HUMAN
UNP
1
1
P24941
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
1
298
1GIJ
1
298
P24941
A
1
1
298
1
PHE
engineered mutation
HIS
82
1GIJ
A
P24941
UNP
82
82
1
LEU
engineered mutation
VAL
83
1GIJ
A
P24941
UNP
83
83
1
LYS
engineered mutation
THR
89
1GIJ
A
P24941
UNP
89
89
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
4
A
PHE
4
A
GLY
13
A
GLY
13
A
GLY
16
A
GLY
16
A
ASN
23
A
ASN
23
A
VAL
29
A
VAL
29
A
ILE
35
A
ILE
35
A
LYS
75
A
LYS
75
A
GLU
81
A
GLU
81
A
LEU
66
A
LEU
66
A
THR
72
A
THR
72
A
GLN
85
A
GLN
85
A
ASP
86
A
ASP
86
A
LEU
133
A
LEU
133
A
ILE
135
A
ILE
135
A
ILE
141
A
ILE
141
A
LEU
143
A
LEU
143
BINDING SITE FOR RESIDUE 2PU A 501
A
2PU
501
Software
11
A
ILE
10
A
ILE
10
11
1_555
A
ALA
31
A
ALA
31
11
1_555
A
LYS
33
A
LYS
33
11
1_555
A
PHE
80
A
PHE
80
11
1_555
A
HIS
82
A
HIS
82
11
1_555
A
VAL
83
A
VAL
83
11
1_555
A
ASP
86
A
ASP
86
11
1_555
A
THR
89
A
THR
89
11
1_555
A
LEU
134
A
LEU
134
11
1_555
A
ASP
145
A
ASP
145
11
1_555
A
HOH
644
C
HOH
11
1_555
19
P 21 21 21