1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Banci, L.
Bertini, I.
Huber, J.G.
Spyroulias, G.A.
Turano, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
4
21
31
10.1007/s007750050285
10499099
Solution structure of reduced horse heart cytochrome c.
1999
US
Biochemistry
BICHAW
0033
0006-2960
33
6408
Solution Structure of Horse Heart Ferrocytochrome C Determined by High-Resolution NMR and Restrained Simulated Annealing
1994
10.2210/pdb1giw/pdb
pdb_00001giw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
REDUCED FORM
11725.598
CYTOCHROME C
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
no
no
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
horse
Equus
sample
9796
HEART
Equus caballus
database_2
pdbx_database_status
pdbx_nmr_exptl_sample_conditions
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Experimental preparation
Other
1
0
1998-12-09
1
1
2008-03-03
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_exptl_sample_conditions.pressure_units
_pdbx_nmr_software.name
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-06-17
REL
HEC
HEME C
LEAST RESTRAINT VIOLATION
40
1
NOESY TOCSY
100 mM PHOSPHATE
7.0
1013
mbar
293
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE
SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION
33
H2O
PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN
refinement
Amber
structure solution
DYANA
structure solution
Amber
800
Bruker
AVANCE 800
HEC
105
2
HEC
HEC
105
A
GLY
1
n
1
GLY
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
GLY
6
n
6
GLY
6
A
LYS
7
n
7
LYS
7
A
LYS
8
n
8
LYS
8
A
ILE
9
n
9
ILE
9
A
PHE
10
n
10
PHE
10
A
VAL
11
n
11
VAL
11
A
GLN
12
n
12
GLN
12
A
LYS
13
n
13
LYS
13
A
CYS
14
n
14
CYS
14
A
ALA
15
n
15
ALA
15
A
GLN
16
n
16
GLN
16
A
CYS
17
n
17
CYS
17
A
HIS
18
n
18
HIS
18
A
THR
19
n
19
THR
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
LYS
22
n
22
LYS
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
LYS
25
n
25
LYS
25
A
HIS
26
n
26
HIS
26
A
LYS
27
n
27
LYS
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
PRO
30
n
30
PRO
30
A
ASN
31
n
31
ASN
31
A
LEU
32
n
32
LEU
32
A
HIS
33
n
33
HIS
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
PHE
36
n
36
PHE
36
A
GLY
37
n
37
GLY
37
A
ARG
38
n
38
ARG
38
A
LYS
39
n
39
LYS
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
GLN
42
n
42
GLN
42
A
ALA
43
n
43
ALA
43
A
PRO
44
n
44
PRO
44
A
GLY
45
n
45
GLY
45
A
PHE
46
n
46
PHE
46
A
THR
47
n
47
THR
47
A
TYR
48
n
48
TYR
48
A
THR
49
n
49
THR
49
A
ASP
50
n
50
ASP
50
A
ALA
51
n
51
ALA
51
A
ASN
52
n
52
ASN
52
A
LYS
53
n
53
LYS
53
A
ASN
54
n
54
ASN
54
A
LYS
55
n
55
LYS
55
A
GLY
56
n
56
GLY
56
A
ILE
57
n
57
ILE
57
A
THR
58
n
58
THR
58
A
TRP
59
n
59
TRP
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
MET
65
n
65
MET
65
A
GLU
66
n
66
GLU
66
A
TYR
67
n
67
TYR
67
A
LEU
68
n
68
LEU
68
A
GLU
69
n
69
GLU
69
A
ASN
70
n
70
ASN
70
A
PRO
71
n
71
PRO
71
A
LYS
72
n
72
LYS
72
A
LYS
73
n
73
LYS
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
GLY
77
n
77
GLY
77
A
THR
78
n
78
THR
78
A
LYS
79
n
79
LYS
79
A
MET
80
n
80
MET
80
A
ILE
81
n
81
ILE
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
GLY
84
n
84
GLY
84
A
ILE
85
n
85
ILE
85
A
LYS
86
n
86
LYS
86
A
LYS
87
n
87
LYS
87
A
LYS
88
n
88
LYS
88
A
THR
89
n
89
THR
89
A
GLU
90
n
90
GLU
90
A
ARG
91
n
91
ARG
91
A
GLU
92
n
92
GLU
92
A
ASP
93
n
93
ASP
93
A
LEU
94
n
94
LEU
94
A
ILE
95
n
95
ILE
95
A
ALA
96
n
96
ALA
96
A
TYR
97
n
97
TYR
97
A
LEU
98
n
98
LEU
98
A
LYS
99
n
99
LYS
99
A
LYS
100
n
100
LYS
100
A
ALA
101
n
101
ALA
101
A
THR
102
n
102
THR
102
A
ASN
103
n
103
ASN
103
A
GLU
104
n
104
GLU
104
A
author_defined_assembly
1
monomeric
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NA
HEC
1_555
92.5
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NB
HEC
1_555
88.4
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NB
HEC
1_555
93.4
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
88.8
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
175.3
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
NC
HEC
1_555
91.1
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
91.8
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
88.0
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
178.6
A
HEC
105
B
NC
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
HEC
105
B
ND
HEC
1_555
87.5
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
170.9
A
HEC
105
B
NA
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
84.3
A
HEC
105
B
NB
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
100.3
A
HEC
105
B
NC
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
93.7
A
HEC
105
B
ND
HEC
1_555
A
HEC
105
B
FE
HEC
1_555
A
MET
80
A
SD
MET
80
1_555
79.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
PHE
10
0.103
SIDE CHAIN
1
A
HIS
18
0.077
SIDE CHAIN
1
A
TYR
74
0.136
SIDE CHAIN
1
A
ARG
91
0.098
SIDE CHAIN
1
-8.24
1.30
105.70
97.46
A
A
A
CG
ND1
CE1
HIS
HIS
HIS
33
33
33
N
1
A
LYS
22
-179.11
-54.29
1
A
HIS
26
-76.10
-112.85
1
A
LYS
27
70.01
70.44
1
A
THR
28
86.49
10.43
1
A
LEU
35
-92.12
-60.39
1
A
PHE
36
-57.06
105.99
1
A
GLN
42
-168.05
83.27
1
A
TYR
48
56.12
-171.00
1
A
TRP
59
15.39
68.93
1
A
GLU
61
-75.71
38.63
1
A
GLU
62
-133.83
-57.67
1
A
ALA
83
-150.08
9.05
1
A
LYS
86
-166.72
-65.19
1
A
LYS
87
-167.43
-63.00
1
A
LYS
88
-163.37
-55.73
1
A
ASN
103
-156.89
58.27
model building
DYANA
refinement
AMBER
refinement
DYANA
SOLUTION STRUCTURE OF REDUCED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
2
N
N
A
VAL
3
A
VAL
3
HELX_P
A
LYS
13
A
LYS
13
1
1
11
A
ASP
50
A
ASP
50
HELX_P
A
LYS
53
A
LYS
53
1
2
4
A
THR
63
A
THR
63
HELX_P
A
GLU
69
A
GLU
69
1
3
7
A
PRO
71
A
PRO
71
HELX_P
A
TYR
74
A
TYR
74
1
4
4
A
THR
89
A
THR
89
HELX_P
A
ALA
101
A
ALA
101
1
5
13
covale
1.810
none
A
CYS
14
A
SG
CYS
14
1_555
A
HEC
105
B
CAB
HEC
1_555
covale
1.821
none
A
CYS
17
A
SG
CYS
17
1_555
A
HEC
105
B
CAC
HEC
1_555
metalc
1.941
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
105
B
FE
HEC
1_555
metalc
2.362
A
MET
80
A
SD
MET
80
1_555
A
HEC
105
B
FE
HEC
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, CYTOCHROME C
CYC_HORSE
UNP
1
1
P00004
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKKATNE
1
104
1GIW
1
104
P00004
A
1
1
104
BINDING SITE FOR RESIDUE HEC A 105
A
HEC
105
Software
20
A
PHE
10
A
PHE
10
20
1_555
A
LYS
13
A
LYS
13
20
1_555
A
CYS
14
A
CYS
14
20
1_555
A
CYS
17
A
CYS
17
20
1_555
A
HIS
18
A
HIS
18
20
1_555
A
THR
28
A
THR
28
20
1_555
A
PRO
30
A
PRO
30
20
1_555
A
LEU
32
A
LEU
32
20
1_555
A
LEU
35
A
LEU
35
20
1_555
A
TYR
48
A
TYR
48
20
1_555
A
THR
49
A
THR
49
20
1_555
A
ASN
52
A
ASN
52
20
1_555
A
TRP
59
A
TRP
59
20
1_555
A
TYR
67
A
TYR
67
20
1_555
A
LEU
68
A
LEU
68
20
1_555
A
THR
78
A
THR
78
20
1_555
A
LYS
79
A
LYS
79
20
1_555
A
MET
80
A
MET
80
20
1_555
A
PHE
82
A
PHE
82
20
1_555
A
LEU
94
A
LEU
94
20
1_555
1
P 1