1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Banci, L. Bertini, I. Huber, J.G. Spyroulias, G.A. Turano, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 4 21 31 10.1007/s007750050285 10499099 Solution structure of reduced horse heart cytochrome c. 1999 US Biochemistry BICHAW 0033 0006-2960 33 6408 Solution Structure of Horse Heart Ferrocytochrome C Determined by High-Resolution NMR and Restrained Simulated Annealing 1994 10.2210/pdb1giw/pdb pdb_00001giw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 REDUCED FORM 11725.598 CYTOCHROME C 1 nat polymer 618.503 HEME C 1 syn non-polymer no no GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n horse Equus sample 9796 HEART Equus caballus database_2 pdbx_database_status pdbx_nmr_exptl_sample_conditions pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Experimental preparation Other 1 0 1998-12-09 1 1 2008-03-03 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_software.name _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-06-17 REL HEC HEME C LEAST RESTRAINT VIOLATION 40 1 NOESY TOCSY 100 mM PHOSPHATE 7.0 1013 mbar 293 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION 33 H2O PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN refinement Amber structure solution DYANA structure solution Amber 800 Bruker AVANCE 800 HEC 105 2 HEC HEC 105 A GLY 1 n 1 GLY 1 A ASP 2 n 2 ASP 2 A VAL 3 n 3 VAL 3 A GLU 4 n 4 GLU 4 A LYS 5 n 5 LYS 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A PHE 10 n 10 PHE 10 A VAL 11 n 11 VAL 11 A GLN 12 n 12 GLN 12 A LYS 13 n 13 LYS 13 A CYS 14 n 14 CYS 14 A ALA 15 n 15 ALA 15 A GLN 16 n 16 GLN 16 A CYS 17 n 17 CYS 17 A HIS 18 n 18 HIS 18 A THR 19 n 19 THR 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A LYS 22 n 22 LYS 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A LYS 25 n 25 LYS 25 A HIS 26 n 26 HIS 26 A LYS 27 n 27 LYS 27 A THR 28 n 28 THR 28 A GLY 29 n 29 GLY 29 A PRO 30 n 30 PRO 30 A ASN 31 n 31 ASN 31 A LEU 32 n 32 LEU 32 A HIS 33 n 33 HIS 33 A GLY 34 n 34 GLY 34 A LEU 35 n 35 LEU 35 A PHE 36 n 36 PHE 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A LYS 39 n 39 LYS 39 A THR 40 n 40 THR 40 A GLY 41 n 41 GLY 41 A GLN 42 n 42 GLN 42 A ALA 43 n 43 ALA 43 A PRO 44 n 44 PRO 44 A GLY 45 n 45 GLY 45 A PHE 46 n 46 PHE 46 A THR 47 n 47 THR 47 A TYR 48 n 48 TYR 48 A THR 49 n 49 THR 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A ASN 52 n 52 ASN 52 A LYS 53 n 53 LYS 53 A ASN 54 n 54 ASN 54 A LYS 55 n 55 LYS 55 A GLY 56 n 56 GLY 56 A ILE 57 n 57 ILE 57 A THR 58 n 58 THR 58 A TRP 59 n 59 TRP 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A MET 65 n 65 MET 65 A GLU 66 n 66 GLU 66 A TYR 67 n 67 TYR 67 A LEU 68 n 68 LEU 68 A GLU 69 n 69 GLU 69 A ASN 70 n 70 ASN 70 A PRO 71 n 71 PRO 71 A LYS 72 n 72 LYS 72 A LYS 73 n 73 LYS 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A GLY 77 n 77 GLY 77 A THR 78 n 78 THR 78 A LYS 79 n 79 LYS 79 A MET 80 n 80 MET 80 A ILE 81 n 81 ILE 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A GLY 84 n 84 GLY 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A LYS 87 n 87 LYS 87 A LYS 88 n 88 LYS 88 A THR 89 n 89 THR 89 A GLU 90 n 90 GLU 90 A ARG 91 n 91 ARG 91 A GLU 92 n 92 GLU 92 A ASP 93 n 93 ASP 93 A LEU 94 n 94 LEU 94 A ILE 95 n 95 ILE 95 A ALA 96 n 96 ALA 96 A TYR 97 n 97 TYR 97 A LEU 98 n 98 LEU 98 A LYS 99 n 99 LYS 99 A LYS 100 n 100 LYS 100 A ALA 101 n 101 ALA 101 A THR 102 n 102 THR 102 A ASN 103 n 103 ASN 103 A GLU 104 n 104 GLU 104 A author_defined_assembly 1 monomeric A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NA HEC 1_555 92.5 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NB HEC 1_555 88.4 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NB HEC 1_555 93.4 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 88.8 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 175.3 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B NC HEC 1_555 91.1 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 91.8 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 88.0 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 178.6 A HEC 105 B NC HEC 1_555 A HEC 105 B FE HEC 1_555 A HEC 105 B ND HEC 1_555 87.5 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 170.9 A HEC 105 B NA HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 84.3 A HEC 105 B NB HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 100.3 A HEC 105 B NC HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 93.7 A HEC 105 B ND HEC 1_555 A HEC 105 B FE HEC 1_555 A MET 80 A SD MET 80 1_555 79.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A PHE 10 0.103 SIDE CHAIN 1 A HIS 18 0.077 SIDE CHAIN 1 A TYR 74 0.136 SIDE CHAIN 1 A ARG 91 0.098 SIDE CHAIN 1 -8.24 1.30 105.70 97.46 A A A CG ND1 CE1 HIS HIS HIS 33 33 33 N 1 A LYS 22 -179.11 -54.29 1 A HIS 26 -76.10 -112.85 1 A LYS 27 70.01 70.44 1 A THR 28 86.49 10.43 1 A LEU 35 -92.12 -60.39 1 A PHE 36 -57.06 105.99 1 A GLN 42 -168.05 83.27 1 A TYR 48 56.12 -171.00 1 A TRP 59 15.39 68.93 1 A GLU 61 -75.71 38.63 1 A GLU 62 -133.83 -57.67 1 A ALA 83 -150.08 9.05 1 A LYS 86 -166.72 -65.19 1 A LYS 87 -167.43 -63.00 1 A LYS 88 -163.37 -55.73 1 A ASN 103 -156.89 58.27 model building DYANA refinement AMBER refinement DYANA SOLUTION STRUCTURE OF REDUCED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N 2 N N A VAL 3 A VAL 3 HELX_P A LYS 13 A LYS 13 1 1 11 A ASP 50 A ASP 50 HELX_P A LYS 53 A LYS 53 1 2 4 A THR 63 A THR 63 HELX_P A GLU 69 A GLU 69 1 3 7 A PRO 71 A PRO 71 HELX_P A TYR 74 A TYR 74 1 4 4 A THR 89 A THR 89 HELX_P A ALA 101 A ALA 101 1 5 13 covale 1.810 none A CYS 14 A SG CYS 14 1_555 A HEC 105 B CAB HEC 1_555 covale 1.821 none A CYS 17 A SG CYS 17 1_555 A HEC 105 B CAC HEC 1_555 metalc 1.941 A HIS 18 A NE2 HIS 18 1_555 A HEC 105 B FE HEC 1_555 metalc 2.362 A MET 80 A SD MET 80 1_555 A HEC 105 B FE HEC 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, CYTOCHROME C CYC_HORSE UNP 1 1 P00004 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE 1 104 1GIW 1 104 P00004 A 1 1 104 BINDING SITE FOR RESIDUE HEC A 105 A HEC 105 Software 20 A PHE 10 A PHE 10 20 1_555 A LYS 13 A LYS 13 20 1_555 A CYS 14 A CYS 14 20 1_555 A CYS 17 A CYS 17 20 1_555 A HIS 18 A HIS 18 20 1_555 A THR 28 A THR 28 20 1_555 A PRO 30 A PRO 30 20 1_555 A LEU 32 A LEU 32 20 1_555 A LEU 35 A LEU 35 20 1_555 A TYR 48 A TYR 48 20 1_555 A THR 49 A THR 49 20 1_555 A ASN 52 A ASN 52 20 1_555 A TRP 59 A TRP 59 20 1_555 A TYR 67 A TYR 67 20 1_555 A LEU 68 A LEU 68 20 1_555 A THR 78 A THR 78 20 1_555 A LYS 79 A LYS 79 20 1_555 A MET 80 A MET 80 20 1_555 A PHE 82 A PHE 82 20 1_555 A LEU 94 A LEU 94 20 1_555 1 P 1