1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hoehn, S.T. Junker, H.-D. Bunt, R.C. Turner, C.J. Stubbe, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 Co 3 58.933 COBALT (III) ION non-polymer C55 H85 N20 O21 S2 1 1426.515 BLEOMYCIN B2 non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking O 15.999 OXYGEN ATOM non-polymer H2 O2 34.015 HYDROGEN PEROXIDE non-polymer C2 H5 O6 P 156.031 2-PHOSPHOGLYCOLIC ACID non-polymer N 1 N CO N 2 N N N 3 S C N 4 N C N 5 N O N 6 N N N 7 N C N 8 N N N 9 N N N 10 N C N 11 N C N 12 N O Y 13 N C Y 14 N C Y 15 N C Y 16 N N Y 17 N C Y 18 N N N 19 S C N 20 N N N 21 N C N 22 N C N 23 N O N 24 N N N 25 S C N 26 N C N 27 N O N 28 R C Y 29 N C N 30 N O Y 31 N N Y 32 N C Y 33 N C Y 34 N N N 35 N N N 36 S C N 37 N C N 38 N O N 39 N O N 40 R C N 41 N C N 42 S C N 43 N C N 44 N N N 45 S C N 46 N C N 47 N O N 48 R C N 49 N O N 50 N C N 51 N N N 52 N C N 53 N C N 54 N O Y 55 N C N 56 N C Y 57 N S Y 58 N C Y 59 N C Y 60 N N Y 61 N C Y 62 N C Y 63 N N Y 64 N C Y 65 N S N 66 N N N 67 N C N 68 N C N 69 N C N 70 N C N 71 N C N 72 N N N 73 N N N 74 N N N 75 N O N 76 N O N 77 N C N 78 N O N 79 N O N 80 S C N 81 N O N 82 R C N 83 S C N 84 S C N 85 S C N 86 S C N 87 S C N 88 R C N 89 R C N 90 N O N 91 R C N 92 N O N 93 N O N 94 N O N 95 N N N 96 N C N 97 N O N 98 N O N 99 N C N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N O N 186 N P N 187 N O N 188 N O N 189 N O N 190 N C N 191 R C N 192 N O N 193 S C N 194 N O N 195 N C N 196 R C Y 197 N N Y 198 N C Y 199 N N Y 200 N C Y 201 N C N 202 N N Y 203 N N Y 204 N C Y 205 N N Y 206 N C N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N O N 222 N P N 223 N O N 224 N O N 225 N O N 226 N C N 227 R C N 228 N O N 229 S C N 230 N O N 231 N C N 232 R C N 233 N N N 234 N C N 235 N O N 236 N N N 237 N C N 238 N N N 239 N C N 240 N C N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N O N 256 N P N 257 N O N 258 N O N 259 N O N 260 N C N 261 R C N 262 N O N 263 S C N 264 N O N 265 N C N 266 R C Y 267 N N Y 268 N C Y 269 N N Y 270 N C N 271 N C N 272 N O N 273 N N N 274 N C N 275 N N N 276 N N Y 277 N C N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N O N 293 N P N 294 N O N 295 N O N 296 N O N 297 N C N 298 R C N 299 N O N 300 S C N 301 N O N 302 N C N 303 R C N 304 N N N 305 N C N 306 N O N 307 N N N 308 N C N 309 N O N 310 N C N 311 N C N 312 N C N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N O N 329 N O N 330 N O N 331 N H N 332 N H N 333 N P N 334 N O N 335 N O N 336 N O N 337 N O N 338 N C N 339 N C N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N doub N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub Y 24 N doub Y 25 N sing N 26 N sing Y 27 N sing N 28 N sing Y 29 N doub N 30 N sing Y 31 N sing Y 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing Y 52 N sing Y 53 N doub N 54 N sing Y 55 N doub Y 56 N sing N 57 N sing Y 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing N 107 N sing Y 108 N sing Y 109 N doub N 110 N sing Y 111 N sing Y 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing Y 117 N doub Y 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing Y 212 N sing Y 213 N sing Y 214 N doub N 215 N sing Y 216 N sing Y 217 N sing Y 218 N doub N 219 N sing Y 220 N doub N 221 N sing N 222 N sing Y 223 N sing Y 224 N doub N 225 N sing Y 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N sing Y 286 N sing Y 287 N doub N 288 N sing Y 289 N sing N 290 N sing Y 291 N doub N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing US Biochemistry BICHAW 0033 0006-2960 40 5894 5905 10.1021/bi002635g 11352724 Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. 2001 10.2210/pdb1gj2/pdb pdb_00001gj2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1802.232 5'-D(*CP*CP*AP*AP*AP*G)-3' 1 syn polymer 1849.241 5'-D(P*AP*CP*TP*GP*GP*G)-3' 1 syn polymer 3942.572 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' 1 syn polymer 156.031 2-PHOSPHOGLYCOLIC ACID 1 man non-polymer 58.933 COBALT (III) ION 1 syn non-polymer 15.999 OXYGEN ATOM 1 syn non-polymer 1426.515 BLEOMYCIN B2 1 syn non-polymer 34.015 HYDROGEN PEROXIDE 1 syn non-polymer no no (DC)(DC)(DA)(DA)(DA)(DG) CCAAAG A polydeoxyribonucleotide no no (DA)(DC)(DT)(DG)(DG)(DG) ACTGGG B polydeoxyribonucleotide no no (DC)(DC)(DC)(DA)(DG)(DT)(DA)(DC)(DT)(DT)(DT)(DG)(DG) CCCAGTACTTTGG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n 20.382 1 19 A 1 C 26 -3.249 A_DC1:DG26_C 1 -23.335 0.393 -0.260 -0.239 3.758 1 19 A 2 C 25 -5.198 A_DC2:DG25_C 2 -9.799 0.575 -0.005 -0.381 2.825 1 20 A 3 C 24 7.227 A_DA3:DT24_C 3 7.265 -0.309 0.522 -0.289 -2.675 1 20 A 4 C 23 0.058 A_DA4:DT23_C 4 3.099 0.009 0.468 -0.299 4.559 1 20 A 5 C 22 -0.471 A_DA5:DT22_C 5 0.743 -0.305 0.380 -0.304 9.925 1 19 A 6 C 21 -4.746 A_DG6:DC21_C 6 4.080 -0.487 0.650 -0.367 -1.203 1 20 B 8 C 19 -10.046 B_DA8:DT19_C 7 0.030 0.224 0.035 -0.189 -2.980 1 19 B 9 C 18 -5.376 B_DC9:DG18_C 8 -2.660 -0.176 0.379 -0.229 5.779 1 20 B 10 C 17 -13.627 B_DT10:DA17_C 9 2.411 -0.139 -0.163 -0.147 17.067 1 19 B 11 C 16 -5.551 B_DG11:DC16_C 10 18.817 -0.558 -0.033 -0.309 -1.782 1 19 B 12 C 15 -5.798 B_DG12:DC15_C 11 -1.418 -0.275 -0.111 -0.275 9.411 1 19 B 13 C 14 -4.405 B_DG13:DC14_C 12 -5.196 -0.618 0.176 -0.332 3.536 43.991 A A 1 2 12.750 C C 26 25 3.720 9.477 0.159 -0.521 AA_DC1DC2:DG25DG26_CC 1 2.739 -3.685 42.924 -1.701 0.078 3.319 33.236 A A 2 3 -10.611 C C 25 24 3.337 -5.988 0.312 -1.048 AA_DC2DA3:DT24DG25_CC 2 -7.480 13.256 31.862 -0.791 -1.847 3.663 39.233 A A 3 4 -8.785 C C 24 23 3.573 -5.878 -0.508 -0.849 AA_DA3DA4:DT23DT24_CC 3 -0.423 0.632 38.805 -0.484 0.701 3.197 32.522 A A 4 5 -10.376 C C 23 22 3.146 -5.780 -0.132 -0.615 AA_DA4DA5:DT22DT23_CC 4 1.358 -2.438 31.989 -0.110 0.467 3.146 39.262 A A 5 6 -8.839 C C 22 21 3.044 -5.912 -0.142 -0.915 AA_DA5DG6:DC21DT22_CC 5 -3.213 4.803 38.704 -0.689 -0.153 3.225 33.674 B B 8 9 -1.823 C C 19 18 3.205 -1.055 -0.180 -0.604 BB_DA8DC9:DG18DT19_CC 6 -2.883 4.984 33.538 -0.873 -0.151 3.025 33.635 B B 9 10 -6.005 C C 18 17 3.018 -3.457 0.076 -0.423 BB_DC9DT10:DA17DG18_CC 7 4.976 -8.644 33.100 -0.205 0.625 3.447 34.656 B B 10 11 -16.156 C C 17 16 3.376 -9.496 0.536 -0.938 BB_DT10DG11:DC16DA17_CC 8 -2.952 5.022 33.240 -0.019 -1.384 4.254 45.884 B B 11 12 -15.189 C C 16 15 4.166 -11.707 0.123 -0.905 BB_DG11DG12:DC15DC16_CC 9 4.408 -5.720 44.235 0.171 0.344 3.073 29.297 B B 12 13 12.909 C C 15 14 3.098 6.456 -0.413 0.098 BB_DG12DG13:DC14DC15_CC 10 -4.191 8.380 28.289 -1.145 -0.053 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site chem_comp_atom chem_comp_bond pdbx_nmr_spectrometer repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection Data collection 1 0 2001-06-06 1 1 2007-10-16 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 1 5 2024-07-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _pdbx_nmr_spectrometer.model Ensemble: 1G5D has the same sequence and contains an abasic site (alpha anomer) instead of the phosphoglycolate lesion Minimized Average Structure: 1GIZ has the same sequence and contains an abasic site (alpha anomer) instead of the phosphoglycolate lesion Ensemble: 1G5E has the same sequence and contains an abasic site (beta anomer) instead of the phosphoglycolate lesion Minimized Average Structure: 1GJ0 has the same sequence and contains an abasic site (beta anomer) instead of the phosphoglycolate lesion Ensemble: 1G5K is the structure of the oligonucleotide containing the phosphoglycolate lesion without the bleomycin bound. Minimized Average Structure: 1GJ1 is the structure of the oligonucleotide containing the phosphoglycolate lesion without the bleomycin bound. Ensemble: 1G5L is Co(III)-Bleomycin-OOH bound to an oligonucleotide containing a phosphoglycolate lesion RCSB Y RCSB 2000-11-01 REL PGA 2-PHOSPHOGLYCOLIC ACID 3CO COBALT (III) ION O OXYGEN ATOM BLB BLEOMYCIN B2 PEO HYDROGEN PEROXIDE DNA WAS SYNTHESIZED AS A DOUBLE HAIRPIN, BUT FOR MODELING PURPOSED WAS TREATED AS TWO STRANDS OF DNA; THE HEXAETHYLENE GLYCOL SPACERS WERE NOT INCLUDED IN THE MODELING 1 NOESY TOCSY PE-COSY WATERGATE-NOESY 31P- HCOSY 13C-HSQC ROESY 40 mM sodium phosphate buffer 6.8 ambient 293 K 40 mM sodium phosphate buffer 6.8 ambient 278 K THE STRUCTURES ARE BASED ON 729 NOE-DERIVED DISTANCE CONSTRAINTS AND 96 DIHEDRAL ANGLE RESTRAINTS. molecular dynamics 1.25 mM drug-DNA complex; 40 mM sodium phosphate buffer D2O 1.25 mM drug-DNA complex; 40 mM sodium phosphate buffer 90% H2O/10% D2O MSI processing Felix 95.0 Brunger structure solution X-PLOR 3.851 MSI data analysis Felix 95.0 Brunger refinement X-PLOR 3.851 750 Home-built home-built 600 Home-built home-built 2PL 6 4 PGA PGA 7 A 3CO 10 5 3CO 3CO 14 B O 8 6 O O 15 B BLB 1 7 BLB BLB 1 C PEO 11 8 PEO PEO 11 C C 1 n 1 DC 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A G 6 n 6 DG 6 A A 8 n 1 DA 8 B C 9 n 2 DC 9 B T 10 n 3 DT 10 B G 11 n 4 DG 11 B G 12 n 5 DG 12 B G 13 n 6 DG 13 B C 14 n 1 DC 14 C C 15 n 2 DC 15 C C 16 n 3 DC 16 C A 17 n 4 DA 17 C G 18 n 5 DG 18 C T 19 n 6 DT 19 C A 20 n 7 DA 20 C C 21 n 8 DC 21 C T 22 n 9 DT 22 C T 23 n 10 DT 23 C T 24 n 11 DT 24 C G 25 n 12 DG 25 C G 26 n 13 DG 26 C author_defined_assembly 3 trimeric C BLB 1 G NC BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NB BLB 1_555 84.5 C BLB 1 G NC BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NG BLB 1_555 77.6 C BLB 1 G NB BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NG BLB 1_555 93.5 C BLB 1 G NC BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NH BLB 1_555 154.8 C BLB 1 G NB BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NH BLB 1_555 86.9 C BLB 1 G NG BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NH BLB 1_555 79.3 C BLB 1 G NC BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NJ BLB 1_555 114.6 C BLB 1 G NB BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NJ BLB 1_555 93.5 C BLB 1 G NG BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NJ BLB 1_555 166.5 C BLB 1 G NH BLB 1_555 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NJ BLB 1_555 89.6 C BLB 1 G NC BLB 1_555 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 93.6 C BLB 1 G NB BLB 1_555 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 174.2 C BLB 1 G NG BLB 1_555 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 91.5 C BLB 1 G NH BLB 1_555 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 97.0 C BLB 1 G NJ BLB 1_555 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 82.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C CO HB2 3CO BLB 14 1 1.41 1 C C OP1 HO2 DA BLB 20 1 1.50 1 4.63 0.30 108.30 112.93 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 4.08 0.60 118.90 122.98 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 4.29 0.60 118.60 122.89 A A A N1 C6 N6 DA DA DA 4 4 4 N 1 4.03 0.60 118.60 122.63 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 7.01 0.70 119.90 126.91 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -5.02 0.70 108.00 102.98 B B B O4' C1' N9 DA DA DA 8 8 8 N 1 4.15 0.60 118.60 122.75 B B B N1 C6 N6 DA DA DA 8 8 8 N 1 3.07 0.30 108.30 111.37 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 -2.67 0.40 121.90 119.23 B B B N3 C4 C5 DC DC DC 9 9 9 N 1 4.32 0.70 118.00 122.32 B B B N3 C4 N4 DC DC DC 9 9 9 N 1 3.86 0.30 108.30 112.16 B B B O4' C1' N1 DT DT DT 10 10 10 N 1 -4.58 0.60 122.90 118.32 B B B C6 C5 C7 DT DT DT 10 10 10 N 1 -3.67 0.60 123.90 120.23 B B B N1 C2 N3 DG DG DG 11 11 11 N 1 6.00 0.70 119.90 125.90 B B B N3 C2 N2 DG DG DG 11 11 11 N 1 5.97 0.70 119.90 125.87 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 5.98 0.70 119.90 125.88 B B B N3 C2 N2 DG DG DG 13 13 13 N 1 3.91 0.30 108.30 112.21 C C C O4' C1' N1 DC DC DC 14 14 14 N 1 12.98 1.60 120.90 133.88 C C C P O5' C5' DC DC DC 15 15 15 N 1 3.71 0.60 118.90 122.61 C C C N1 C2 O2 DC DC DC 15 15 15 N 1 -4.69 0.70 121.90 117.21 C C C N3 C2 O2 DC DC DC 15 15 15 N 1 2.20 0.30 108.30 110.50 C C C O4' C1' N1 DC DC DC 16 16 16 N 1 3.82 0.60 118.90 122.72 C C C N1 C2 O2 DC DC DC 16 16 16 N 1 5.98 0.60 118.60 124.58 C C C N1 C6 N6 DA DA DA 17 17 17 N 1 -5.59 0.80 123.70 118.11 C C C C5 C6 N6 DA DA DA 17 17 17 N 1 7.52 1.20 119.70 127.22 C C C C3' O3' P DA DA DG 17 17 18 Y 1 -2.53 0.40 106.40 103.87 C C C C8 N9 C4 DG DG DG 18 18 18 N 1 -4.93 0.80 105.90 100.97 C C C O4' C1' C2' DT DT DT 19 19 19 N 1 4.88 0.60 119.00 123.88 C C C C4 C5 C7 DT DT DT 19 19 19 N 1 -5.79 0.60 122.90 117.11 C C C C6 C5 C7 DT DT DT 19 19 19 N 1 -5.21 0.80 105.90 100.69 C C C O4' C1' C2' DA DA DA 20 20 20 N 1 -5.05 0.70 108.00 102.95 C C C O4' C1' N9 DA DA DA 20 20 20 N 1 9.97 1.20 119.70 129.67 C C C C3' O3' P DC DC DT 21 21 22 Y 1 10.45 0.60 119.00 129.45 C C C C4 C5 C7 DT DT DT 22 22 22 N 1 -12.61 0.60 122.90 110.29 C C C C6 C5 C7 DT DT DT 22 22 22 N 1 11.97 1.20 119.70 131.67 C C C C3' O3' P DT DT DT 22 22 23 Y 1 4.38 0.60 119.00 123.38 C C C C4 C5 C7 DT DT DT 23 23 23 N 1 -7.11 0.60 122.90 115.79 C C C C6 C5 C7 DT DT DT 23 23 23 N 1 11.35 0.60 119.00 130.35 C C C C4 C5 C7 DT DT DT 24 24 24 N 1 -13.61 0.60 122.90 109.29 C C C C6 C5 C7 DT DT DT 24 24 24 N 1 8.42 1.20 119.70 128.12 C C C C3' O3' P DT DT DG 24 24 25 Y 1 4.51 0.70 119.90 124.41 C C C N3 C2 N2 DG DG DG 25 25 25 N 1 5.82 0.70 119.90 125.72 C C C N3 C2 N2 DG DG DG 26 26 26 N 1 C C N9 C4 DA DA 17 17 0.036 0.006 1.374 1.410 N CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N covale 1.600 one A DG 6 A O3' DG 6 1_555 A PGA 7 D P PGA 1_555 covale 1.481 both B DA 8 B P DA 1 1_555 B O 15 F O O 1_555 metalc 2.000 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NC BLB 1_555 metalc 1.950 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NB BLB 1_555 metalc 1.854 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NG BLB 1_555 metalc 1.926 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NH BLB 1_555 metalc 1.918 B 3CO 14 E CO 3CO 1_555 C BLB 1 G NJ BLB 1_555 metalc 2.033 B 3CO 14 E CO 3CO 1_555 C PEO 11 H O1 PEO 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 C DG 26 C N1 DG 13 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 C DG 26 C O6 DG 13 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 C DG 26 C N2 DG 13 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 C DG 25 C N1 DG 12 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 C DG 25 C O6 DG 12 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 C DG 25 C N2 DG 12 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 C DT 24 C N3 DT 11 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 C DT 24 C O4 DT 11 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 C DT 23 C N3 DT 10 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 C DT 23 C O4 DT 10 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 C DT 22 C N3 DT 9 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 C DT 22 C O4 DT 9 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 C DC 21 C N3 DC 8 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 C DC 21 C O2 DC 8 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 C DC 21 C N4 DC 8 1_555 hydrog WATSON-CRICK B DA 8 B N1 DA 1 1_555 C DT 19 C N3 DT 6 1_555 hydrog WATSON-CRICK B DA 8 B N6 DA 1 1_555 C DT 19 C O4 DT 6 1_555 hydrog WATSON-CRICK B DC 9 B N3 DC 2 1_555 C DG 18 C N1 DG 5 1_555 hydrog WATSON-CRICK B DC 9 B N4 DC 2 1_555 C DG 18 C O6 DG 5 1_555 hydrog WATSON-CRICK B DC 9 B O2 DC 2 1_555 C DG 18 C N2 DG 5 1_555 hydrog WATSON-CRICK B DT 10 B N3 DT 3 1_555 C DA 17 C N1 DA 4 1_555 hydrog WATSON-CRICK B DT 10 B O4 DT 3 1_555 C DA 17 C N6 DA 4 1_555 hydrog WATSON-CRICK B DG 11 B N1 DG 4 1_555 C DC 16 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B N2 DG 4 1_555 C DC 16 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 11 B O6 DG 4 1_555 C DC 16 C N4 DC 3 1_555 hydrog WATSON-CRICK B DG 12 B N1 DG 5 1_555 C DC 15 C N3 DC 2 1_555 hydrog WATSON-CRICK B DG 12 B N2 DG 5 1_555 C DC 15 C O2 DC 2 1_555 hydrog WATSON-CRICK B DG 12 B O6 DG 5 1_555 C DC 15 C N4 DC 2 1_555 hydrog WATSON-CRICK B DG 13 B N1 DG 6 1_555 C DC 14 C N3 DC 1 1_555 hydrog WATSON-CRICK B DG 13 B N2 DG 6 1_555 C DC 14 C O2 DC 1 1_555 hydrog WATSON-CRICK B DG 13 B O6 DG 6 1_555 C DC 14 C N4 DC 1 1_555 DNA DAMAGED DNA, DNA-DRUG COMPLEX, INTERCALATION, DNA 1GJ2 PDB 1 1GJ2 1GJ2 PDB 2 1GJ2 1GJ2 PDB 3 1GJ2 1 6 1GJ2 1 6 1GJ2 A 1 1 6 8 13 1GJ2 8 13 1GJ2 B 2 1 6 14 26 1GJ2 14 26 1GJ2 C 3 1 13 BINDING SITE FOR RESIDUE PGA A 7 A PGA 7 Software 2 BINDING SITE FOR RESIDUE 3CO B 14 B 3CO 14 Software 2 BINDING SITE FOR RESIDUE O B 15 B O 15 Software 1 BINDING SITE FOR RESIDUE BLB C 1 C BLB 1 Software 13 BINDING SITE FOR RESIDUE PEO C 11 C PEO 11 Software 3 A DG 6 A DG 6 2 1_555 C BLB 1 G BLB 2 1_555 C BLB 1 G BLB 2 1_555 C PEO 11 H PEO 2 1_555 B DA 8 B DA 1 1 1_555 A DG 6 A DG 6 13 1_555 A PGA 7 D PGA 13 1_555 B DA 8 B DA 1 13 1_555 B DC 9 B DC 2 13 1_555 B DT 10 B DT 3 13 1_555 B DG 11 B DG 4 13 1_555 B DG 12 B DG 5 13 1_555 B DG 13 B DG 6 13 1_555 B 3CO 14 E 3CO 13 1_555 C PEO 11 H PEO 13 1_555 C DG 18 C DG 5 13 1_555 C DT 19 C DT 6 13 1_555 C DA 20 C DA 7 13 1_555 B 3CO 14 E 3CO 3 1_555 C BLB 1 G BLB 3 1_555 C DT 19 C DT 6 3 1_555 1 P 1