0.012195
-0.000000
0.005437
0.000000
0.020161
-0.000000
0.000000
0.000000
0.016269
0.00000
0.00000
0.00000
Katz, B.A.
Sprengeler, P.A.
Luong, C.
Verner, E.
Spencer, J.R.
Breitenbucher, J.G.
Hui, H.
McGee, D.
Allen, D.
Martelli, A.
Mackman, R.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.0
114.03
90.0
82.00
49.60
67.30
C20 H16 N4 O
328.367
2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
C
N
8
N
N
N
9
N
N
Y
10
N
N
Y
11
N
N
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
N
19
N
O
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
N
N
43
S
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
N
N
63
N
C
N
64
N
N
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
R
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
Y
1
N
sing
Y
2
N
doub
N
3
N
sing
Y
4
N
doub
N
5
N
sing
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
Y
10
N
sing
Y
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
E
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
Y
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
N
29
N
sing
Y
30
N
doub
Y
31
N
sing
N
32
N
sing
N
33
N
sing
Y
34
N
doub
Y
35
N
sing
Y
36
N
sing
N
37
N
sing
Y
38
N
doub
N
39
N
sing
Y
40
N
sing
N
41
N
sing
Y
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
Y
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
UK
Chem.Biol.
CBOLE2
2050
1074-5521
8
1107
1121
10.1016/S1074-5521(01)00084-9
11731301
Engineering inhibitors highly selective for the S1 sites of Ser190 trypsin-like serine protease drug targets.
2001
10.2210/pdb1gjb/pdb
pdb_00001gjb
298
1
IMAGE PLATE
1998-04-30
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
2708.183
UROKINASE-TYPE PLASMINOGEN ACTIVATOR
SHORT CHAIN
1
man
polymer
28435.428
UROKINASE-TYPE PLASMINOGEN ACTIVATOR
3.4.21.73
CATALYTIC DOMAIN
N145A
1
man
polymer
192.124
CITRIC ACID
2
syn
non-polymer
328.367
2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE
1
syn
non-polymer
18.015
water
351
nat
water
UPA, U-PLASMINOGEN ACTIVATOR, UROKINASE-PLASMINOGEN ACTIVATOR
UPA, U-PLASMINOGEN ACTIVATOR, UROKINASE-PLASMINOGEN ACTIVATOR
E.C.3.4.21.73
no
no
KPSSPPEELKFQCGQKTLRPRFK
KPSSPPEELKFQCGQKTLRPRFK
A
polypeptide(L)
no
no
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTKEENGLAL
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTKEENGLAL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
P.PASTORIS
9606
Homo sapiens
562
Escherichia coli
PLASMID
PPIC9LMWUPA
human
Homo
Escherichia
sample
P.PASTORIS
9606
Homo sapiens
562
Escherichia coli
PLASMID
PPIC9LMWUPA
1
2.01
38.68
VAPOR DIFFUSION
6.50
2-propanol, PEG 4000, pH 6.5, vapor diffusion at 298 K, pH 6.50
298
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Atomic model
Version format compliance
Advisory
Refinement description
Advisory
Data collection
Database references
Derived calculations
1
0
2002-04-27
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-12-27
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
the same protein complexed with a different inhibitor
N
RCSB
Y
RCSB
2001-04-27
REL
REL
CIT
CITRIC ACID
130
2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE
HOH
water
CIT
1
3
CIT
CIT
1
B
CIT
2
3
CIT
CIT
2
B
130
246
4
130
130
251
B
HOH
129
5
HOH
HOH
129
A
HOH
141
5
HOH
HOH
141
A
HOH
433
5
HOH
HOH
433
A
HOH
467
5
HOH
HOH
467
A
HOH
584
5
HOH
HOH
584
A
HOH
585
5
HOH
HOH
585
A
HOH
661
5
HOH
HOH
661
A
HOH
662
5
HOH
HOH
662
A
HOH
682
5
HOH
HOH
682
A
HOH
715
5
HOH
HOH
715
A
HOH
720
5
HOH
HOH
720
A
HOH
748
5
HOH
HOH
748
A
HOH
3
5
HOH
HOH
252
B
HOH
5
5
HOH
HOH
253
B
HOH
6
5
HOH
HOH
254
B
HOH
7
5
HOH
HOH
255
B
HOH
10
5
HOH
HOH
256
B
HOH
11
5
HOH
HOH
257
B
HOH
12
5
HOH
HOH
258
B
HOH
13
5
HOH
HOH
259
B
HOH
14
5
HOH
HOH
260
B
HOH
15
5
HOH
HOH
261
B
HOH
17
5
HOH
HOH
262
B
HOH
18
5
HOH
HOH
263
B
HOH
20
5
HOH
HOH
264
B
HOH
21
5
HOH
HOH
265
B
HOH
23
5
HOH
HOH
266
B
HOH
25
5
HOH
HOH
267
B
HOH
26
5
HOH
HOH
268
B
HOH
27
5
HOH
HOH
269
B
HOH
28
5
HOH
HOH
270
B
HOH
29
5
HOH
HOH
271
B
HOH
30
5
HOH
HOH
272
B
HOH
31
5
HOH
HOH
273
B
HOH
32
5
HOH
HOH
274
B
HOH
33
5
HOH
HOH
275
B
HOH
35
5
HOH
HOH
276
B
HOH
36
5
HOH
HOH
277
B
HOH
38
5
HOH
HOH
278
B
HOH
39
5
HOH
HOH
279
B
HOH
41
5
HOH
HOH
280
B
HOH
42
5
HOH
HOH
281
B
HOH
43
5
HOH
HOH
282
B
HOH
44
5
HOH
HOH
283
B
HOH
45
5
HOH
HOH
284
B
HOH
46
5
HOH
HOH
285
B
HOH
47
5
HOH
HOH
286
B
HOH
49
5
HOH
HOH
287
B
HOH
50
5
HOH
HOH
288
B
HOH
51
5
HOH
HOH
289
B
HOH
52
5
HOH
HOH
290
B
HOH
56
5
HOH
HOH
291
B
HOH
58
5
HOH
HOH
292
B
HOH
59
5
HOH
HOH
293
B
HOH
61
5
HOH
HOH
294
B
HOH
62
5
HOH
HOH
295
B
HOH
63
5
HOH
HOH
296
B
HOH
64
5
HOH
HOH
297
B
HOH
68
5
HOH
HOH
298
B
HOH
70
5
HOH
HOH
299
B
HOH
72
5
HOH
HOH
300
B
HOH
73
5
HOH
HOH
301
B
HOH
75
5
HOH
HOH
302
B
HOH
77
5
HOH
HOH
303
B
HOH
78
5
HOH
HOH
304
B
HOH
79
5
HOH
HOH
305
B
HOH
83
5
HOH
HOH
306
B
HOH
86
5
HOH
HOH
307
B
HOH
87
5
HOH
HOH
308
B
HOH
88
5
HOH
HOH
309
B
HOH
90
5
HOH
HOH
310
B
HOH
92
5
HOH
HOH
311
B
HOH
97
5
HOH
HOH
312
B
HOH
98
5
HOH
HOH
313
B
HOH
99
5
HOH
HOH
314
B
HOH
100
5
HOH
HOH
315
B
HOH
101
5
HOH
HOH
316
B
HOH
102
5
HOH
HOH
317
B
HOH
106
5
HOH
HOH
318
B
HOH
107
5
HOH
HOH
319
B
HOH
108
5
HOH
HOH
320
B
HOH
118
5
HOH
HOH
321
B
HOH
119
5
HOH
HOH
322
B
HOH
120
5
HOH
HOH
323
B
HOH
121
5
HOH
HOH
324
B
HOH
123
5
HOH
HOH
325
B
HOH
126
5
HOH
HOH
326
B
HOH
132
5
HOH
HOH
327
B
HOH
138
5
HOH
HOH
328
B
HOH
139
5
HOH
HOH
329
B
HOH
140
5
HOH
HOH
330
B
HOH
142
5
HOH
HOH
331
B
HOH
144
5
HOH
HOH
332
B
HOH
146
5
HOH
HOH
333
B
HOH
150
5
HOH
HOH
334
B
HOH
151
5
HOH
HOH
335
B
HOH
152
5
HOH
HOH
336
B
HOH
154
5
HOH
HOH
337
B
HOH
163
5
HOH
HOH
338
B
HOH
164
5
HOH
HOH
339
B
HOH
167
5
HOH
HOH
340
B
HOH
172
5
HOH
HOH
341
B
HOH
173
5
HOH
HOH
342
B
HOH
174
5
HOH
HOH
343
B
HOH
197
5
HOH
HOH
344
B
HOH
198
5
HOH
HOH
345
B
HOH
199
5
HOH
HOH
346
B
HOH
200
5
HOH
HOH
347
B
HOH
201
5
HOH
HOH
348
B
HOH
202
5
HOH
HOH
349
B
HOH
203
5
HOH
HOH
350
B
HOH
205
5
HOH
HOH
351
B
HOH
206
5
HOH
HOH
352
B
HOH
207
5
HOH
HOH
353
B
HOH
208
5
HOH
HOH
354
B
HOH
209
5
HOH
HOH
355
B
HOH
210
5
HOH
HOH
356
B
HOH
211
5
HOH
HOH
357
B
HOH
212
5
HOH
HOH
358
B
HOH
215
5
HOH
HOH
359
B
HOH
221
5
HOH
HOH
360
B
HOH
222
5
HOH
HOH
361
B
HOH
223
5
HOH
HOH
362
B
HOH
236
5
HOH
HOH
363
B
HOH
237
5
HOH
HOH
364
B
HOH
241
5
HOH
HOH
365
B
HOH
242
5
HOH
HOH
366
B
HOH
243
5
HOH
HOH
367
B
HOH
247
5
HOH
HOH
368
B
HOH
248
5
HOH
HOH
369
B
HOH
249
5
HOH
HOH
370
B
HOH
281
5
HOH
HOH
371
B
HOH
283
5
HOH
HOH
372
B
HOH
284
5
HOH
HOH
373
B
HOH
285
5
HOH
HOH
374
B
HOH
286
5
HOH
HOH
375
B
HOH
287
5
HOH
HOH
376
B
HOH
289
5
HOH
HOH
377
B
HOH
290
5
HOH
HOH
378
B
HOH
292
5
HOH
HOH
379
B
HOH
293
5
HOH
HOH
380
B
HOH
296
5
HOH
HOH
381
B
HOH
297
5
HOH
HOH
382
B
HOH
298
5
HOH
HOH
383
B
HOH
299
5
HOH
HOH
384
B
HOH
300
5
HOH
HOH
385
B
HOH
301
5
HOH
HOH
386
B
HOH
302
5
HOH
HOH
387
B
HOH
303
5
HOH
HOH
388
B
HOH
306
5
HOH
HOH
389
B
HOH
307
5
HOH
HOH
390
B
HOH
308
5
HOH
HOH
391
B
HOH
310
5
HOH
HOH
392
B
HOH
313
5
HOH
HOH
393
B
HOH
314
5
HOH
HOH
394
B
HOH
315
5
HOH
HOH
395
B
HOH
316
5
HOH
HOH
396
B
HOH
319
5
HOH
HOH
397
B
HOH
320
5
HOH
HOH
398
B
HOH
321
5
HOH
HOH
399
B
HOH
323
5
HOH
HOH
400
B
HOH
324
5
HOH
HOH
401
B
HOH
329
5
HOH
HOH
402
B
HOH
331
5
HOH
HOH
403
B
HOH
332
5
HOH
HOH
404
B
HOH
333
5
HOH
HOH
405
B
HOH
342
5
HOH
HOH
406
B
HOH
355
5
HOH
HOH
407
B
HOH
358
5
HOH
HOH
408
B
HOH
364
5
HOH
HOH
409
B
HOH
365
5
HOH
HOH
410
B
HOH
368
5
HOH
HOH
411
B
HOH
373
5
HOH
HOH
412
B
HOH
375
5
HOH
HOH
413
B
HOH
376
5
HOH
HOH
414
B
HOH
377
5
HOH
HOH
415
B
HOH
378
5
HOH
HOH
416
B
HOH
379
5
HOH
HOH
417
B
HOH
381
5
HOH
HOH
418
B
HOH
382
5
HOH
HOH
419
B
HOH
383
5
HOH
HOH
420
B
HOH
385
5
HOH
HOH
421
B
HOH
386
5
HOH
HOH
422
B
HOH
388
5
HOH
HOH
423
B
HOH
389
5
HOH
HOH
424
B
HOH
390
5
HOH
HOH
425
B
HOH
391
5
HOH
HOH
426
B
HOH
392
5
HOH
HOH
427
B
HOH
399
5
HOH
HOH
428
B
HOH
400
5
HOH
HOH
429
B
HOH
412
5
HOH
HOH
430
B
HOH
413
5
HOH
HOH
431
B
HOH
414
5
HOH
HOH
432
B
HOH
416
5
HOH
HOH
433
B
HOH
417
5
HOH
HOH
434
B
HOH
418
5
HOH
HOH
435
B
HOH
419
5
HOH
HOH
436
B
HOH
420
5
HOH
HOH
437
B
HOH
426
5
HOH
HOH
438
B
HOH
429
5
HOH
HOH
439
B
HOH
435
5
HOH
HOH
440
B
HOH
436
5
HOH
HOH
441
B
HOH
437
5
HOH
HOH
442
B
HOH
438
5
HOH
HOH
443
B
HOH
439
5
HOH
HOH
444
B
HOH
440
5
HOH
HOH
445
B
HOH
441
5
HOH
HOH
446
B
HOH
446
5
HOH
HOH
447
B
HOH
447
5
HOH
HOH
448
B
HOH
448
5
HOH
HOH
449
B
HOH
450
5
HOH
HOH
450
B
HOH
451
5
HOH
HOH
451
B
HOH
452
5
HOH
HOH
452
B
HOH
453
5
HOH
HOH
453
B
HOH
455
5
HOH
HOH
454
B
HOH
456
5
HOH
HOH
455
B
HOH
457
5
HOH
HOH
456
B
HOH
459
5
HOH
HOH
457
B
HOH
461
5
HOH
HOH
458
B
HOH
465
5
HOH
HOH
459
B
HOH
468
5
HOH
HOH
460
B
HOH
469
5
HOH
HOH
461
B
HOH
471
5
HOH
HOH
462
B
HOH
473
5
HOH
HOH
463
B
HOH
478
5
HOH
HOH
464
B
HOH
497
5
HOH
HOH
465
B
HOH
502
5
HOH
HOH
466
B
HOH
504
5
HOH
HOH
467
B
HOH
505
5
HOH
HOH
468
B
HOH
507
5
HOH
HOH
469
B
HOH
508
5
HOH
HOH
470
B
HOH
515
5
HOH
HOH
471
B
HOH
524
5
HOH
HOH
472
B
HOH
532
5
HOH
HOH
473
B
HOH
539
5
HOH
HOH
474
B
HOH
550
5
HOH
HOH
475
B
HOH
552
5
HOH
HOH
476
B
HOH
555
5
HOH
HOH
477
B
HOH
572
5
HOH
HOH
478
B
HOH
573
5
HOH
HOH
479
B
HOH
574
5
HOH
HOH
480
B
HOH
577
5
HOH
HOH
481
B
HOH
578
5
HOH
HOH
482
B
HOH
579
5
HOH
HOH
483
B
HOH
580
5
HOH
HOH
484
B
HOH
581
5
HOH
HOH
485
B
HOH
583
5
HOH
HOH
486
B
HOH
588
5
HOH
HOH
487
B
HOH
589
5
HOH
HOH
488
B
HOH
591
5
HOH
HOH
489
B
HOH
592
5
HOH
HOH
490
B
HOH
593
5
HOH
HOH
491
B
HOH
595
5
HOH
HOH
492
B
HOH
596
5
HOH
HOH
493
B
HOH
597
5
HOH
HOH
494
B
HOH
598
5
HOH
HOH
495
B
HOH
599
5
HOH
HOH
496
B
HOH
602
5
HOH
HOH
497
B
HOH
604
5
HOH
HOH
498
B
HOH
605
5
HOH
HOH
499
B
HOH
610
5
HOH
HOH
500
B
HOH
620
5
HOH
HOH
501
B
HOH
628
5
HOH
HOH
502
B
HOH
629
5
HOH
HOH
503
B
HOH
633
5
HOH
HOH
504
B
HOH
634
5
HOH
HOH
505
B
HOH
635
5
HOH
HOH
506
B
HOH
636
5
HOH
HOH
507
B
HOH
638
5
HOH
HOH
508
B
HOH
639
5
HOH
HOH
509
B
HOH
647
5
HOH
HOH
510
B
HOH
649
5
HOH
HOH
511
B
HOH
650
5
HOH
HOH
512
B
HOH
663
5
HOH
HOH
513
B
HOH
664
5
HOH
HOH
514
B
HOH
677
5
HOH
HOH
515
B
HOH
678
5
HOH
HOH
516
B
HOH
680
5
HOH
HOH
517
B
HOH
681
5
HOH
HOH
518
B
HOH
685
5
HOH
HOH
519
B
HOH
691
5
HOH
HOH
520
B
HOH
694
5
HOH
HOH
521
B
HOH
701
5
HOH
HOH
522
B
HOH
702
5
HOH
HOH
523
B
HOH
716
5
HOH
HOH
524
B
HOH
717
5
HOH
HOH
525
B
HOH
718
5
HOH
HOH
526
B
HOH
719
5
HOH
HOH
527
B
HOH
737
5
HOH
HOH
528
B
HOH
739
5
HOH
HOH
529
B
HOH
743
5
HOH
HOH
530
B
HOH
744
5
HOH
HOH
531
B
HOH
750
5
HOH
HOH
532
B
HOH
753
5
HOH
HOH
533
B
HOH
754
5
HOH
HOH
534
B
HOH
755
5
HOH
HOH
535
B
HOH
757
5
HOH
HOH
536
B
HOH
758
5
HOH
HOH
537
B
HOH
766
5
HOH
HOH
538
B
HOH
767
5
HOH
HOH
539
B
HOH
776
5
HOH
HOH
540
B
HOH
785
5
HOH
HOH
541
B
HOH
788
5
HOH
HOH
542
B
HOH
791
5
HOH
HOH
543
B
HOH
792
5
HOH
HOH
544
B
HOH
798
5
HOH
HOH
545
B
HOH
803
5
HOH
HOH
546
B
HOH
806
5
HOH
HOH
547
B
HOH
816
5
HOH
HOH
548
B
HOH
823
5
HOH
HOH
549
B
HOH
830
5
HOH
HOH
550
B
HOH
831
5
HOH
HOH
551
B
HOH
832
5
HOH
HOH
552
B
HOH
838
5
HOH
HOH
553
B
HOH
839
5
HOH
HOH
554
B
HOH
843
5
HOH
HOH
555
B
HOH
844
5
HOH
HOH
556
B
HOH
846
5
HOH
HOH
557
B
HOH
847
5
HOH
HOH
558
B
HOH
848
5
HOH
HOH
559
B
HOH
849
5
HOH
HOH
560
B
HOH
850
5
HOH
HOH
561
B
HOH
851
5
HOH
HOH
562
B
HOH
852
5
HOH
HOH
563
B
HOH
857
5
HOH
HOH
564
B
HOH
860
5
HOH
HOH
565
B
HOH
881
5
HOH
HOH
566
B
HOH
890
5
HOH
HOH
567
B
HOH
894
5
HOH
HOH
568
B
HOH
900
5
HOH
HOH
569
B
HOH
903
5
HOH
HOH
570
B
HOH
908
5
HOH
HOH
571
B
HOH
909
5
HOH
HOH
572
B
HOH
910
5
HOH
HOH
573
B
HOH
911
5
HOH
HOH
574
B
HOH
912
5
HOH
HOH
575
B
HOH
913
5
HOH
HOH
576
B
HOH
914
5
HOH
HOH
577
B
HOH
915
5
HOH
HOH
578
B
HOH
916
5
HOH
HOH
579
B
HOH
917
5
HOH
HOH
580
B
HOH
919
5
HOH
HOH
581
B
HOH
925
5
HOH
HOH
582
B
HOH
929
5
HOH
HOH
583
B
HOH
931
5
HOH
HOH
584
B
HOH
934
5
HOH
HOH
585
B
HOH
935
5
HOH
HOH
586
B
HOH
936
5
HOH
HOH
587
B
HOH
937
5
HOH
HOH
588
B
HOH
940
5
HOH
HOH
589
B
HOH
943
5
HOH
HOH
590
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
LEU
9
n
9
LEU
9
A
LYS
10
n
10
LYS
10
A
PHE
11
n
11
PHE
11
A
GLN
12
n
12
GLN
12
A
CYS
13
n
13
CYS
13
A
GLY
14
n
14
GLY
14
A
GLN
15
n
15
GLN
15
A
LYS
16
n
16
LYS
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
ILE
16
n
1
ILE
16
B
ILE
17
n
2
ILE
17
B
GLY
18
n
3
GLY
18
B
GLY
19
n
4
GLY
19
B
GLU
20
n
5
GLU
20
B
PHE
21
n
6
PHE
21
B
THR
22
n
7
THR
22
B
THR
23
n
8
THR
23
B
ILE
24
n
9
ILE
24
B
GLU
25
n
10
GLU
25
B
ASN
26
n
11
ASN
26
B
GLN
27
n
12
GLN
27
B
PRO
28
n
13
PRO
28
B
TRP
29
n
14
TRP
29
B
PHE
30
n
15
PHE
30
B
ALA
31
n
16
ALA
31
B
ALA
32
n
17
ALA
32
B
ILE
33
n
18
ILE
33
B
TYR
34
n
19
TYR
34
B
ARG
35
n
20
ARG
35
B
ARG
36
n
21
ARG
36
B
HIS
37
n
22
HIS
37
B
ARG
37
n
23
A
ARG
37
B
GLY
37
n
24
B
GLY
37
B
GLY
37
n
25
C
GLY
37
B
SER
37
n
26
D
SER
37
B
VAL
38
n
27
VAL
38
B
THR
39
n
28
THR
39
B
TYR
40
n
29
TYR
40
B
VAL
41
n
30
VAL
41
B
CYS
42
n
31
CYS
42
B
GLY
43
n
32
GLY
43
B
GLY
44
n
33
GLY
44
B
SER
45
n
34
SER
45
B
LEU
46
n
35
LEU
46
B
MET
47
n
36
MET
47
B
SER
48
n
37
SER
48
B
PRO
49
n
38
PRO
49
B
CYS
50
n
39
CYS
50
B
TRP
51
n
40
TRP
51
B
VAL
52
n
41
VAL
52
B
ILE
53
n
42
ILE
53
B
SER
54
n
43
SER
54
B
ALA
55
n
44
ALA
55
B
THR
56
n
45
THR
56
B
HIS
57
n
46
HIS
57
B
CYS
58
n
47
CYS
58
B
PHE
59
n
48
PHE
59
B
ILE
60
n
49
ILE
60
B
ASP
60
n
50
A
ASP
60
B
TYR
60
n
51
B
TYR
60
B
PRO
60
n
52
C
PRO
60
B
LYS
61
n
53
LYS
61
B
LYS
62
n
54
LYS
62
B
GLU
62
n
55
A
GLU
62
B
ASP
63
n
56
ASP
63
B
TYR
64
n
57
TYR
64
B
ILE
65
n
58
ILE
65
B
VAL
66
n
59
VAL
66
B
TYR
67
n
60
TYR
67
B
LEU
68
n
61
LEU
68
B
GLY
69
n
62
GLY
69
B
ARG
70
n
63
ARG
70
B
SER
71
n
64
SER
71
B
ARG
72
n
65
ARG
72
B
LEU
73
n
66
LEU
73
B
ASN
74
n
67
ASN
74
B
SER
75
n
68
SER
75
B
ASN
76
n
69
ASN
76
B
THR
77
n
70
THR
77
B
GLN
78
n
71
GLN
78
B
GLY
79
n
72
GLY
79
B
GLU
80
n
73
GLU
80
B
MET
81
n
74
MET
81
B
LYS
82
n
75
LYS
82
B
PHE
83
n
76
PHE
83
B
GLU
84
n
77
GLU
84
B
VAL
85
n
78
VAL
85
B
GLU
86
n
79
GLU
86
B
ASN
87
n
80
ASN
87
B
LEU
88
n
81
LEU
88
B
ILE
89
n
82
ILE
89
B
LEU
90
n
83
LEU
90
B
HIS
91
n
84
HIS
91
B
LYS
92
n
85
LYS
92
B
ASP
93
n
86
ASP
93
B
TYR
94
n
87
TYR
94
B
SER
95
n
88
SER
95
B
ALA
96
n
89
ALA
96
B
ASP
97
n
90
ASP
97
B
THR
97
n
91
A
THR
97
B
LEU
97
n
92
B
LEU
97
B
ALA
98
n
93
ALA
98
B
HIS
99
n
94
HIS
99
B
HIS
100
n
95
HIS
100
B
ASN
101
n
96
ASN
101
B
ASP
102
n
97
ASP
102
B
ILE
103
n
98
ILE
103
B
ALA
104
n
99
ALA
104
B
LEU
105
n
100
LEU
105
B
LEU
106
n
101
LEU
106
B
LYS
107
n
102
LYS
107
B
ILE
108
n
103
ILE
108
B
ARG
109
n
104
ARG
109
B
SER
110
n
105
SER
110
B
LYS
110
n
106
A
LYS
110
B
GLU
110
n
107
B
GLU
110
B
GLY
110
n
108
C
GLY
110
B
ARG
110
n
109
D
ARG
110
B
CYS
111
n
110
CYS
111
B
ALA
112
n
111
ALA
112
B
GLN
113
n
112
GLN
113
B
PRO
114
n
113
PRO
114
B
SER
115
n
114
SER
115
B
ARG
116
n
115
ARG
116
B
THR
117
n
116
THR
117
B
ILE
118
n
117
ILE
118
B
GLN
119
n
118
GLN
119
B
THR
120
n
119
THR
120
B
ILE
121
n
120
ILE
121
B
CYS
122
n
121
CYS
122
B
LEU
123
n
122
LEU
123
B
PRO
124
n
123
PRO
124
B
SER
125
n
124
SER
125
B
MET
126
n
125
MET
126
B
TYR
127
n
126
TYR
127
B
ASN
128
n
127
ASN
128
B
ASP
129
n
128
ASP
129
B
PRO
130
n
129
PRO
130
B
GLN
131
n
130
GLN
131
B
PHE
132
n
131
PHE
132
B
GLY
133
n
132
GLY
133
B
THR
134
n
133
THR
134
B
SER
135
n
134
SER
135
B
CYS
136
n
135
CYS
136
B
GLU
137
n
136
GLU
137
B
ILE
138
n
137
ILE
138
B
THR
139
n
138
THR
139
B
GLY
140
n
139
GLY
140
B
PHE
141
n
140
PHE
141
B
GLY
142
n
141
GLY
142
B
LYS
143
n
142
LYS
143
B
GLU
144
n
143
GLU
144
B
ALA
145
n
144
ALA
145
B
SER
146
n
145
SER
146
B
THR
147
n
146
THR
147
B
ASP
148
n
147
ASP
148
B
TYR
149
n
148
TYR
149
B
LEU
150
n
149
LEU
150
B
TYR
151
n
150
TYR
151
B
PRO
152
n
151
PRO
152
B
GLU
153
n
152
GLU
153
B
GLN
154
n
153
GLN
154
B
LEU
155
n
154
LEU
155
B
LYS
156
n
155
LYS
156
B
MET
157
n
156
MET
157
B
THR
158
n
157
THR
158
B
VAL
159
n
158
VAL
159
B
VAL
160
n
159
VAL
160
B
LYS
161
n
160
LYS
161
B
LEU
162
n
161
LEU
162
B
ILE
163
n
162
ILE
163
B
SER
164
n
163
SER
164
B
HIS
165
n
164
HIS
165
B
ARG
166
n
165
ARG
166
B
GLU
167
n
166
GLU
167
B
CYS
168
n
167
CYS
168
B
GLN
169
n
168
GLN
169
B
GLN
170
n
169
GLN
170
B
PRO
170
n
170
A
PRO
170
B
HIS
170
n
171
B
HIS
170
B
TYR
171
n
172
TYR
171
B
TYR
172
n
173
TYR
172
B
GLY
173
n
174
GLY
173
B
SER
174
n
175
SER
174
B
GLU
175
n
176
GLU
175
B
VAL
176
n
177
VAL
176
B
THR
177
n
178
THR
177
B
THR
178
n
179
THR
178
B
LYS
179
n
180
LYS
179
B
MET
180
n
181
MET
180
B
LEU
181
n
182
LEU
181
B
CYS
182
n
183
CYS
182
B
ALA
183
n
184
ALA
183
B
ALA
184
n
185
ALA
184
B
ASP
185
n
186
ASP
185
B
PRO
185
n
187
A
PRO
185
B
GLN
185
n
188
B
GLN
185
B
TRP
186
n
189
TRP
186
B
LYS
187
n
190
LYS
187
B
THR
188
n
191
THR
188
B
ASP
189
n
192
ASP
189
B
SER
190
n
193
SER
190
B
CYS
191
n
194
CYS
191
B
GLN
192
n
195
GLN
192
B
GLY
193
n
196
GLY
193
B
ASP
194
n
197
ASP
194
B
SER
195
n
198
SER
195
B
GLY
196
n
199
GLY
196
B
GLY
197
n
200
GLY
197
B
PRO
198
n
201
PRO
198
B
LEU
199
n
202
LEU
199
B
VAL
200
n
203
VAL
200
B
CYS
201
n
204
CYS
201
B
SER
202
n
205
SER
202
B
LEU
203
n
206
LEU
203
B
GLN
204
n
207
GLN
204
B
GLY
205
n
208
GLY
205
B
ARG
206
n
209
ARG
206
B
MET
207
n
210
MET
207
B
THR
208
n
211
THR
208
B
LEU
209
n
212
LEU
209
B
THR
210
n
213
THR
210
B
GLY
211
n
214
GLY
211
B
ILE
212
n
215
ILE
212
B
VAL
213
n
216
VAL
213
B
SER
214
n
217
SER
214
B
TRP
215
n
218
TRP
215
B
GLY
216
n
219
GLY
216
B
ARG
217
n
220
ARG
217
B
GLY
219
n
221
GLY
219
B
CYS
220
n
222
CYS
220
B
ALA
221
n
223
ALA
221
B
LEU
222
n
224
LEU
222
B
LYS
223
n
225
LYS
223
B
ASP
223
n
226
A
ASP
223
B
LYS
224
n
227
LYS
224
B
PRO
225
n
228
PRO
225
B
GLY
226
n
229
GLY
226
B
VAL
227
n
230
VAL
227
B
TYR
228
n
231
TYR
228
B
THR
229
n
232
THR
229
B
ARG
230
n
233
ARG
230
B
VAL
231
n
234
VAL
231
B
SER
232
n
235
SER
232
B
HIS
233
n
236
HIS
233
B
PHE
234
n
237
PHE
234
B
LEU
235
n
238
LEU
235
B
PRO
236
n
239
PRO
236
B
TRP
237
n
240
TRP
237
B
ILE
238
n
241
ILE
238
B
ARG
239
n
242
ARG
239
B
SER
240
n
243
SER
240
B
HIS
241
n
244
HIS
241
B
THR
242
n
245
THR
242
B
LYS
243
n
246
LYS
243
B
n
247
244
B
n
248
245
B
n
249
246
B
n
250
247
B
n
251
248
B
n
252
249
B
n
253
250
B
author_and_software_defined_assembly
PISA
2
dimeric
1420
-4
12090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
ARG
35
B
N
ARG
20
B
O
THR
39
B
O
THR
28
B
N
MET
47
B
N
MET
36
B
O
TRP
51
B
O
TRP
40
B
N
SER
54
B
N
SER
43
B
O
ALA
104
B
O
ALA
99
B
O
ARG
109
B
O
ARG
104
B
N
GLU
84
B
N
GLU
77
B
N
VAL
85
B
N
VAL
78
B
O
TYR
64
B
O
TYR
57
B
O
TYR
67
B
O
TYR
60
B
N
ALA
32
B
N
ALA
17
B
O
SER
95
B
O
SER
88
B
N
HIS
100
B
N
HIS
95
A
1
B
NE
ARG
37
B
NE
ARG
23
0
Y
A
1
B
CZ
ARG
37
B
CZ
ARG
23
0
Y
A
1
B
NH1
ARG
37
B
NH1
ARG
23
0
Y
A
1
B
NH2
ARG
37
B
NH2
ARG
23
0
Y
B
1
B
N
GLY
37
B
N
GLY
24
0
Y
1
B
CE
MET
47
A
B
CE
MET
36
0
Y
1
B
CD
GLN
78
B
CD
GLN
71
0
Y
1
B
OE1
GLN
78
B
OE1
GLN
71
0
Y
1
B
NE2
GLN
78
B
NE2
GLN
71
0
Y
1
B
CG
LYS
179
B
CG
LYS
180
0
Y
1
B
CD
LYS
179
B
CD
LYS
180
0
Y
1
B
CE
LYS
179
B
CE
LYS
180
0
Y
1
B
NZ
LYS
179
B
NZ
LYS
180
0
Y
B
1
B
CD
GLN
185
B
CD
GLN
188
0
Y
B
1
B
OE1
GLN
185
B
OE1
GLN
188
0
Y
B
1
B
NE2
GLN
185
B
NE2
GLN
188
0
Y
1
A
LYS
1
A
LYS
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
PRO
5
A
PRO
5
1
Y
1
A
PRO
6
A
PRO
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
GLU
8
A
GLU
8
1
Y
1
A
THR
17
A
THR
17
1
Y
1
A
LEU
18
A
LEU
18
1
Y
1
A
ARG
19
A
ARG
19
1
Y
1
A
PRO
20
A
PRO
20
1
Y
1
A
ARG
21
A
ARG
21
1
Y
1
A
PHE
22
A
PHE
22
1
Y
1
A
LYS
23
A
LYS
23
1
Y
1
B
GLU
244
B
GLU
247
1
Y
1
B
GLU
245
B
GLU
248
1
Y
1
B
ASN
246
B
ASN
249
1
Y
1
B
GLY
247
B
GLY
250
1
Y
1
B
LEU
248
B
LEU
251
1
Y
1
B
ALA
249
B
ALA
252
1
Y
1
B
LEU
250
B
LEU
253
1
Y
1
B
B
HZ3
H2
LYS
HOH
223
553
1.32
1
B
B
H2
H1
HOH
HOH
423
427
1.33
1
B
B
HG
O6'
SER
130
195
251
1.36
1
B
B
HO7
O7
CIT
CIT
1
2
1.40
1
B
B
O
H1
HOH
HOH
357
358
1.46
1
B
B
O
H2
HOH
HOH
254
268
1.46
1
B
B
O
H1
TYR
HOH
64
509
1.51
1
B
B
H2
O
HOH
HOH
420
576
1.52
1
B
B
H
O
GLY
HOH
193
560
1.53
1
A
A
O
H1
LYS
HOH
16
433
1.54
1
B
B
O6
H41
CIT
CIT
1
2
1.55
1
B
B
O
H1
LEU
HOH
162
285
1.56
1
B
B
OG1
H2
THR
HOH
177
266
1.56
1
B
B
H2
O
HOH
HOH
414
419
1.57
1
B
B
O
H2
LYS
HOH
82
371
1.57
1
B
B
O
H1
GLY
HOH
79
462
1.58
1
B
B
O
H2
MET
HOH
47
460
1.58
1
B
B
H2
O
HOH
HOH
340
349
1.58
1
B
B
O
H2
HOH
HOH
297
541
1.59
1
B
B
O
H1
HOH
HOH
461
466
1.60
1
B
B
O4
O6
CIT
CIT
1
2
2.17
1
B
ARG
36
0.230
SIDE CHAIN
1
B
ARG
70
0.235
SIDE CHAIN
1
B
ARG
206
0.134
SIDE CHAIN
1
B
ARG
230
0.181
SIDE CHAIN
1
-16.55
2.70
111.00
94.45
B
B
B
N
CA
C
ILE
ILE
ILE
17
17
17
N
1
-8.11
1.00
110.10
101.99
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
29
29
29
N
1
9.11
0.90
109.00
118.11
B
B
B
CD1
NE1
CE2
TRP
TRP
TRP
29
29
29
N
1
10.16
1.10
130.40
140.56
B
B
B
NE1
CE2
CZ2
TRP
TRP
TRP
29
29
29
N
1
-6.68
1.00
107.30
100.62
B
B
B
NE1
CE2
CD2
TRP
TRP
TRP
29
29
29
N
1
-3.54
0.50
120.30
116.76
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
35
35
35
N
1
-6.73
1.00
110.10
103.37
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
51
51
51
N
1
7.89
0.90
109.00
116.89
B
B
B
CD1
NE1
CE2
TRP
TRP
TRP
51
51
51
N
1
9.46
1.10
130.40
139.86
B
B
B
NE1
CE2
CZ2
TRP
TRP
TRP
51
51
51
N
1
-6.36
1.00
107.30
100.94
B
B
B
NE1
CE2
CD2
TRP
TRP
TRP
51
51
51
N
1
-5.42
0.90
133.90
128.48
B
B
B
CG
CD2
CE3
TRP
TRP
TRP
51
51
51
N
1
-4.02
0.50
120.30
116.28
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
109
109
109
N
1
7.43
1.10
114.20
121.63
B
B
B
CA
CB
SG
CYS
CYS
CYS
122
122
122
N
1
-4.27
0.50
120.30
116.03
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
166
166
166
N
1
-6.63
1.00
110.10
103.47
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
186
186
186
N
1
7.96
0.90
109.00
116.96
B
B
B
CD1
NE1
CE2
TRP
TRP
TRP
186
186
186
N
1
9.30
1.10
130.40
139.70
B
B
B
NE1
CE2
CZ2
TRP
TRP
TRP
186
186
186
N
1
-18.70
2.70
111.00
92.30
B
B
B
N
CA
C
LEU
LEU
LEU
199
199
199
N
1
7.11
1.10
114.20
121.31
B
B
B
CA
CB
SG
CYS
CYS
CYS
201
201
201
N
1
-18.53
2.70
111.00
92.47
B
B
B
N
CA
C
MET
MET
MET
207
207
207
N
1
-7.36
1.00
110.10
102.74
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
215
215
215
N
1
9.02
0.90
109.00
118.02
B
B
B
CD1
NE1
CE2
TRP
TRP
TRP
215
215
215
N
1
7.65
1.10
130.40
138.05
B
B
B
NE1
CE2
CZ2
TRP
TRP
TRP
215
215
215
N
1
-6.04
1.00
107.30
101.26
B
B
B
NE1
CE2
CD2
TRP
TRP
TRP
215
215
215
N
1
-7.18
1.00
110.10
102.92
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
237
237
237
N
1
8.83
0.90
109.00
117.83
B
B
B
CD1
NE1
CE2
TRP
TRP
TRP
237
237
237
N
1
7.72
1.10
130.40
138.12
B
B
B
NE1
CE2
CZ2
TRP
TRP
TRP
237
237
237
N
1
-6.51
1.00
107.30
100.79
B
B
B
NE1
CE2
CD2
TRP
TRP
TRP
237
237
237
N
1
B
B
NE2
CD2
HIS
HIS
37
37
-0.076
0.011
1.373
1.297
N
1
B
B
CG
CD2
HIS
HIS
91
91
0.058
0.009
1.354
1.412
N
1
B
B
NE2
CD2
HIS
HIS
99
99
-0.068
0.011
1.373
1.305
N
1
B
B
CG
CD2
HIS
HIS
100
100
0.059
0.009
1.354
1.413
N
1
B
B
CG
CD2
HIS
HIS
165
165
0.064
0.009
1.354
1.418
N
B
1
B
B
OE1
H1
GLN
HOH
185
445
1.52
1_555
4_546
A
1
B
B
O
H1
PRO
HOH
185
559
1.59
1_555
4_546
1
B
B
O
H1
HOH
HOH
309
501
1.59
1_555
4_546
1
B
B
O
O
HOH
HOH
391
562
1.95
1_555
2_656
1
B
B
O
O
HOH
HOH
421
485
2.03
1_555
4_556
1
A
LYS
10
138.20
160.57
1
B
GLN
27
-148.83
55.11
1
B
VAL
41
-118.64
-73.64
1
B
SER
54
-147.78
-154.57
C
1
B
PRO
60
-76.38
35.98
1
B
ASP
93
103.64
35.36
1
B
ASP
97
-132.05
-159.91
B
1
B
LEU
97
141.23
-71.42
1
B
SER
115
-130.98
-149.82
1
B
MET
126
-31.90
120.45
1
B
TYR
127
36.46
31.16
1
B
PHE
141
-104.00
40.64
1
B
LYS
143
-38.63
152.50
1
B
TYR
171
-132.22
-110.05
1
B
TRP
186
38.64
53.00
1
B
ASP
189
-177.02
-177.31
1
B
SER
214
-127.82
-61.06
1
B
PRO
225
-55.16
173.39
1
B
THR
242
-102.78
65.94
Only Leu_A9 to Lys_A16 are included for the A-chain.
Residues prior and after these residues are not visible (disordered).
Residues after Lys_B243 are not visible (disordered).
Residues simultaneously refined in two or more conformations are:
Met_B47, Glu_B86, Thr_B139, Gln_B192, Leu_B235
Disordered waters are:
HOH15 which is close to HOH16;
HOH18 which is close to HOH19;
HOH174 which is close to a symmetry-related equivalent of itself;
HOH290 which is close to HOH291;
HOH386 which is close to HOH387;
HOH593 which is close to HOH594;
HOH832 which is close to HOH833;
No energy terms between citrate 1 and 2 are included because they are
hydrogen-bonded to one another via an unusually short hydrogen bond
between carboxylate / hydroxyl groups.
No energy terms are included among HOH_849, and OgSer195, and O6' of the
inhibitor. These atoms form a very short multi-centered hydrogen-bonding network.
0.259
0.204
0.209
1.90
7.0
1336
19225
13323
10
69.33
1
THROUGHOUT
1.9
FOURIER SYNTHESIS
X-PLOR force field
1.90
7.0
351
2406
51
0
2004
0.017
4.3
1.68
40.04
1GJB
28608
14609
1.0
0.079
1
7.0
2.1
51.1
0.256
1.90
1.98
665
1
27.7
data collection
bioteX
data reduction
bioteX
refinement
X-PLOR
3.851
data scaling
bioteX
ENGINEERING INHIBITORS HIGHLY SELECTIVE FOR THE S1 SITES OF SER190 TRYPSIN-LIKE SERINE PROTEASE DRUG TARGETS
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
B
THR
23
B
THR
8
HELX_P
B
GLN
27
B
GLN
12
5
1
5
B
ALA
55
B
ALA
44
HELX_P
B
ASP
60
B
ASP
50
1
2
7
A
B
LYS
61
B
LYS
53
HELX_P
B
GLU
62
B
GLU
55
5
3
3
A
B
SER
164
B
SER
163
HELX_P
B
GLN
169
B
GLN
168
1
4
6
B
TYR
172
B
TYR
173
HELX_P
B
VAL
176
B
VAL
177
5
5
5
B
PHE
234
B
PHE
237
HELX_P
B
THR
242
B
THR
245
1
6
9
disulf
2.030
A
CYS
13
A
SG
CYS
13
1_555
B
CYS
122
B
SG
CYS
121
1_555
disulf
2.033
B
CYS
42
B
SG
CYS
31
1_555
B
CYS
58
B
SG
CYS
47
1_555
disulf
2.028
B
CYS
50
B
SG
CYS
39
1_555
B
CYS
111
B
SG
CYS
110
1_555
disulf
2.011
B
CYS
136
B
SG
CYS
135
1_555
B
CYS
201
B
SG
CYS
204
1_555
disulf
2.021
B
CYS
168
B
SG
CYS
167
1_555
B
CYS
182
B
SG
CYS
183
1_555
disulf
2.017
B
CYS
191
B
SG
CYS
194
1_555
B
CYS
220
B
SG
CYS
222
1_555
covale
1.993
none
B
CIT
1
C
C3
CIT
1_555
B
CIT
2
D
O6
CIT
1_555
covale
1.971
none
B
CIT
1
C
O7
CIT
1_555
B
CIT
2
D
O7
CIT
1_555
covale
1.855
none
B
CIT
1
C
O7
CIT
1_555
B
CIT
2
D
O6
CIT
1_555
covale
1.849
none
B
CIT
1
C
C5
CIT
1_555
B
CIT
2
D
O6
CIT
1_555
covale
2.005
none
B
CIT
1
C
C6
CIT
1_555
B
CIT
2
D
O6
CIT
1_555
covale
1.793
none
B
CIT
1
C
O6
CIT
1_555
B
CIT
2
D
O6
CIT
1_555
BLOOD CLOTTING, hydrolase
selectivity at S1, H2O displacement, uPA, tPA, Ser190/Ala190 protease, structure-based drug design, BLOOD CLOTTING, hydrolase
UROK_HUMAN
UNP
1
156
P00749
KPSSPPEELKFQCGQKTLRPRFK
UROK_HUMAN
UNP
2
179
P00749
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTKEENGLAL
156
178
1GJB
1
23
P00749
A
1
1
23
179
431
1GJB
16
250
P00749
B
2
1
253
2
ASN
conflict
ALA
145
1GJB
B
P00749
UNP
322
144
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
B
PHE
30
B
PHE
15
B
ARG
36
B
ARG
21
B
VAL
38
B
VAL
27
B
SER
48
B
SER
37
B
TRP
51
B
TRP
40
B
SER
54
B
SER
43
B
ALA
104
B
ALA
99
B
ARG
109
B
ARG
104
B
MET
81
B
MET
74
B
ILE
89
B
ILE
82
B
TYR
64
B
TYR
57
B
LEU
68
B
LEU
61
B
PHE
30
B
PHE
15
B
ARG
36
B
ARG
21
B
SER
95
B
SER
88
B
ALA
96
B
ALA
89
B
HIS
99
B
HIS
94
B
HIS
100
B
HIS
95
BINDING SITE FOR RESIDUE CIT B 1
B
CIT
1
Software
7
BINDING SITE FOR RESIDUE CIT B 2
B
CIT
2
Software
6
BINDING SITE FOR RESIDUE 130 B 251
B
130
251
Software
14
B
CIT
2
D
CIT
7
1_555
B
TYR
67
B
TYR
60
7
1_555
B
LYS
82
B
LYS
75
7
1_555
B
SER
164
B
SER
163
7
3_555
B
HIS
165
B
HIS
164
7
3_555
B
ARG
166
B
ARG
165
7
3_555
B
HOH
534
G
HOH
7
1_555
B
CIT
1
C
CIT
6
1_555
B
ARG
36
B
ARG
21
6
1_555
B
LYS
82
B
LYS
75
6
1_555
B
HIS
165
B
HIS
164
6
3_555
B
ARG
166
B
ARG
165
6
3_555
B
ARG
230
B
ARG
233
6
3_555
B
CYS
42
B
CYS
31
14
1_555
B
HIS
57
B
HIS
46
14
1_555
B
CYS
58
B
CYS
47
14
1_555
B
SER
190
B
SER
193
14
1_555
B
CYS
191
B
CYS
194
14
1_555
B
GLN
192
B
GLN
195
14
1_555
B
SER
195
B
SER
198
14
1_555
B
VAL
213
B
VAL
216
14
1_555
B
TRP
215
B
TRP
218
14
1_555
B
GLY
219
B
GLY
221
14
1_555
B
GLY
226
B
GLY
229
14
1_555
B
HOH
496
G
HOH
14
1_555
B
HOH
560
G
HOH
14
1_555
B
HOH
573
G
HOH
14
1_555
5
monoclinic
C 1 2 1