1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bolton, D. Evans, P.A. Stott, K. Broadhurst, R.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 314 773 10.1006/JMBI.2001.5181 11733996 Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 FRAGMENT CONTAINS FIRST 51 RESIDUES OF HUMAN UBIQUITIN PRECEDED AT THE N-TERMINUS BY GLYCINE AND SERINE 5891.761 UBIQUITIN RESIDUES 1-51 2 man polymer no no GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 511693 ESCHERICHIA COLI BL21 PGEX-4T3 repository Initial release Version format compliance Version format compliance 1 0 2001-12-13 1 1 2011-05-08 1 2 2011-07-13 DI-UBIQUITIN STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C- TERMINAL HYDROLASES STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSEMICELLES TETRAUBIQUITIN UBIQUITIN UBIQUITIN PDBE Y PDBE 2001-08-06 REL STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED FRAGMENTS CONTAINING THE FIRST 51 RESIDUES OF HUMAN UBIQUITIN LOW ENERGY, LEAST RESTRAINT VIOLATION 65 16 HNCACB CBCA(CO)NH 15N-TOCSY-HSQC 15N-NOESY-HSQC HCCH-TOCSY 13C-NOESY-HSQC 12C-FILTERED-NOESY-13C-HSQC 800MM SODIUM SULPHATE 7.0 pH 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. simulated annealing 1 BRUNGER ET AL refinement CNS 0.9 structure solution AZARA structure solution ANSIG3.3 500 Bruker DRX GLY -1 n 1 GLY -1 A SER 0 n 2 SER 0 A MET 1 n 3 MET 1 A GLN 2 n 4 GLN 2 A ILE 3 n 5 ILE 3 A PHE 4 n 6 PHE 4 A VAL 5 n 7 VAL 5 A LYS 6 n 8 LYS 6 A THR 7 n 9 THR 7 A LEU 8 n 10 LEU 8 A THR 9 n 11 THR 9 A GLY 10 n 12 GLY 10 A LYS 11 n 13 LYS 11 A THR 12 n 14 THR 12 A ILE 13 n 15 ILE 13 A THR 14 n 16 THR 14 A LEU 15 n 17 LEU 15 A GLU 16 n 18 GLU 16 A VAL 17 n 19 VAL 17 A GLU 18 n 20 GLU 18 A PRO 19 n 21 PRO 19 A SER 20 n 22 SER 20 A ASP 21 n 23 ASP 21 A THR 22 n 24 THR 22 A ILE 23 n 25 ILE 23 A GLU 24 n 26 GLU 24 A ASN 25 n 27 ASN 25 A VAL 26 n 28 VAL 26 A LYS 27 n 29 LYS 27 A ALA 28 n 30 ALA 28 A LYS 29 n 31 LYS 29 A ILE 30 n 32 ILE 30 A GLN 31 n 33 GLN 31 A ASP 32 n 34 ASP 32 A LYS 33 n 35 LYS 33 A GLU 34 n 36 GLU 34 A GLY 35 n 37 GLY 35 A ILE 36 n 38 ILE 36 A PRO 37 n 39 PRO 37 A PRO 38 n 40 PRO 38 A ASP 39 n 41 ASP 39 A GLN 40 n 42 GLN 40 A GLN 41 n 43 GLN 41 A ARG 42 n 44 ARG 42 A LEU 43 n 45 LEU 43 A ILE 44 n 46 ILE 44 A PHE 45 n 47 PHE 45 A ALA 46 n 48 ALA 46 A GLY 47 n 49 GLY 47 A LYS 48 n 50 LYS 48 A GLN 49 n 51 GLN 49 A LEU 50 n 52 LEU 50 A GLU 51 n 53 GLU 51 A GLY -1 n 1 GLY -1 B SER 0 n 2 SER 0 B MET 1 n 3 MET 1 B GLN 2 n 4 GLN 2 B ILE 3 n 5 ILE 3 B PHE 4 n 6 PHE 4 B VAL 5 n 7 VAL 5 B LYS 6 n 8 LYS 6 B THR 7 n 9 THR 7 B LEU 8 n 10 LEU 8 B THR 9 n 11 THR 9 B GLY 10 n 12 GLY 10 B LYS 11 n 13 LYS 11 B THR 12 n 14 THR 12 B ILE 13 n 15 ILE 13 B THR 14 n 16 THR 14 B LEU 15 n 17 LEU 15 B GLU 16 n 18 GLU 16 B VAL 17 n 19 VAL 17 B GLU 18 n 20 GLU 18 B PRO 19 n 21 PRO 19 B SER 20 n 22 SER 20 B ASP 21 n 23 ASP 21 B THR 22 n 24 THR 22 B ILE 23 n 25 ILE 23 B GLU 24 n 26 GLU 24 B ASN 25 n 27 ASN 25 B VAL 26 n 28 VAL 26 B LYS 27 n 29 LYS 27 B ALA 28 n 30 ALA 28 B LYS 29 n 31 LYS 29 B ILE 30 n 32 ILE 30 B GLN 31 n 33 GLN 31 B ASP 32 n 34 ASP 32 B LYS 33 n 35 LYS 33 B GLU 34 n 36 GLU 34 B GLY 35 n 37 GLY 35 B ILE 36 n 38 ILE 36 B PRO 37 n 39 PRO 37 B PRO 38 n 40 PRO 38 B ASP 39 n 41 ASP 39 B GLN 40 n 42 GLN 40 B GLN 41 n 43 GLN 41 B ARG 42 n 44 ARG 42 B LEU 43 n 45 LEU 43 B ILE 44 n 46 ILE 44 B PHE 45 n 47 PHE 45 B ALA 46 n 48 ALA 46 B GLY 47 n 49 GLY 47 B LYS 48 n 50 LYS 48 B GLN 49 n 51 GLN 49 B LEU 50 n 52 LEU 50 B GLU 51 n 53 GLU 51 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 15 A N LEU 17 A O ILE 3 A O ILE 5 A N LYS 6 A N LYS 8 B O PHE 45 B O PHE 47 A N PHE 45 A N PHE 47 B O PHE 4 B O PHE 6 B N VAL 5 B N VAL 7 B O ILE 13 B O ILE 15 2 A B H H ALA ARG 46 42 1.34 3 A B H H ARG ALA 42 46 1.34 4 A B H H ARG ALA 42 46 1.34 5 A B H H ALA ARG 46 42 1.30 5 A B HB HB ILE ILE 44 44 1.31 5 B B HG23 HE21 ILE GLN 36 40 1.34 6 A B H H ARG ALA 42 46 1.26 6 A B H H ALA ARG 46 42 1.31 7 A B H H ARG ALA 42 46 1.34 9 A B H H ARG ALA 42 46 1.33 10 A B H H ALA ARG 46 42 1.28 10 A B HB HB ILE ILE 44 44 1.31 11 A B HB HB ILE ILE 44 44 1.33 15 A B H H ALA ARG 46 42 1.28 15 A B H H ARG ALA 42 46 1.29 15 B B HA HE21 ALA GLN 28 31 1.33 1 A MET 1 -167.02 52.89 1 A GLU 34 -141.66 -70.69 1 A LEU 50 -45.09 80.41 1 B MET 1 -168.29 51.76 1 B GLU 34 -143.31 -68.43 1 B LEU 50 -54.33 79.92 2 A SER 0 -67.97 -125.50 2 A THR 7 -63.81 -156.63 2 A LEU 15 -161.55 114.34 2 A GLU 34 -145.46 -68.70 2 A PRO 37 -39.80 143.14 2 A LYS 48 -68.52 74.72 2 A GLN 49 -65.41 96.29 2 A LEU 50 -44.27 80.21 2 B SER 0 -68.07 -125.20 2 B THR 7 -68.86 -156.75 2 B LEU 15 -160.66 113.22 2 B GLU 34 -147.48 -61.93 2 B LEU 50 -54.54 79.05 3 A SER 0 -168.71 -47.35 3 A MET 1 -172.67 121.56 3 A THR 7 -70.41 -157.35 3 A GLU 34 -140.52 -68.31 3 A PRO 37 -49.88 155.72 3 A LYS 48 -67.31 75.91 3 A LEU 50 -44.71 84.00 3 B SER 0 -171.41 -48.52 3 B MET 1 -174.28 120.04 3 B THR 7 -74.53 -157.00 3 B LEU 15 -162.80 118.62 3 B GLU 34 -141.27 -61.32 3 B LYS 48 -67.27 75.94 3 B LEU 50 -52.22 79.73 4 A SER 0 56.03 -128.36 4 A MET 1 -165.54 117.13 4 A THR 7 -73.13 -157.20 4 A GLU 34 -135.08 -66.13 4 A LYS 48 -67.19 74.93 4 A GLN 49 -66.73 97.93 4 A LEU 50 -44.88 80.74 4 B SER 0 56.88 -127.82 4 B MET 1 -166.64 115.74 4 B THR 7 -73.29 -157.39 4 B GLU 34 -136.96 -65.86 4 B LEU 50 -56.90 79.52 5 A SER 0 -65.85 -120.09 5 A THR 7 -69.16 -156.75 5 A GLU 34 -169.05 -109.73 5 A PRO 37 -45.84 150.09 5 A LYS 48 -159.74 82.29 5 A GLN 49 -65.82 98.07 5 A LEU 50 -44.14 81.08 5 B SER 0 -65.69 -121.15 5 B THR 7 -72.72 -156.75 5 B GLU 34 -157.72 -90.38 5 B LYS 48 -160.24 111.40 5 B LEU 50 -59.62 79.40 6 A SER 0 -67.46 -125.90 6 A THR 7 -67.70 -159.55 6 A LEU 15 -162.32 115.10 6 A GLU 34 -131.35 -89.37 6 A LYS 48 -161.49 73.80 6 A LEU 50 -45.38 80.12 6 B SER 0 -67.75 -125.26 6 B MET 1 -163.54 115.30 6 B THR 7 -69.96 -160.09 6 B LEU 15 -162.94 112.97 6 B GLU 34 -144.89 -68.25 6 B LYS 48 -160.27 73.97 6 B LEU 50 -50.47 80.43 7 A MET 1 -163.83 57.05 7 A THR 7 -68.49 -156.54 7 A LEU 15 -163.94 114.05 7 A GLU 34 -132.37 -67.33 7 A LYS 48 -69.50 75.28 7 A LEU 50 -44.99 80.40 7 B MET 1 -156.37 57.60 7 B THR 7 -69.53 -156.94 7 B LEU 15 -161.35 113.75 7 B GLU 34 -135.55 -67.19 7 B LYS 48 -69.60 75.89 7 B LEU 50 -49.62 80.36 8 A SER 0 -68.77 -135.68 8 A THR 7 -67.21 -158.20 8 A GLU 34 -146.78 -84.48 8 A GLN 49 -67.48 90.57 8 A LEU 50 -45.93 79.93 8 B SER 0 -68.47 -133.66 8 B THR 7 -68.44 -157.77 8 B GLU 34 -147.41 -81.15 8 B LEU 50 -59.61 79.98 9 A MET 1 -163.42 49.02 9 A THR 7 -70.48 -157.56 9 A GLU 34 -144.89 -67.20 9 A LEU 50 -47.33 80.03 9 B MET 1 -155.87 51.13 9 B THR 7 -71.05 -157.64 9 B GLU 34 -141.52 -60.55 9 B LEU 50 -52.74 80.01 10 A MET 1 178.54 106.95 10 A THR 7 -72.48 -157.62 10 A GLU 34 -169.22 -102.82 10 A LYS 48 -69.20 74.59 10 A LEU 50 -45.05 80.45 10 B MET 1 179.67 106.61 10 B THR 7 -77.54 -157.30 10 B LEU 15 -162.53 115.04 10 B GLU 34 -168.53 -106.92 10 B PRO 37 -38.89 146.30 10 B LYS 48 -69.19 74.89 10 B LEU 50 -52.85 80.21 11 A MET 1 -175.54 115.73 11 A THR 7 -71.43 -157.00 11 A LEU 15 -160.58 114.05 11 A GLU 34 -153.16 -90.00 11 A LEU 50 -44.90 80.28 11 B MET 1 179.56 108.45 11 B THR 7 -68.61 -157.02 11 B LEU 15 -162.72 112.84 11 B GLU 34 -152.03 -87.23 11 B LEU 50 -51.45 80.30 12 A GLU 34 -135.63 -60.18 12 A GLN 49 -66.34 99.80 12 A LEU 50 -44.91 80.55 12 B GLU 34 -138.14 -55.11 12 B LEU 50 -53.12 80.26 13 A SER 0 -164.25 -126.96 13 A MET 1 -160.19 117.38 13 A THR 7 -66.53 -159.95 13 A GLU 34 -150.27 -79.59 13 A GLN 49 -65.40 99.46 13 A LEU 50 -44.79 80.48 13 B SER 0 -164.40 -124.42 13 B MET 1 -163.32 117.16 13 B THR 7 -70.57 -157.39 13 B LEU 15 -164.20 114.62 13 B GLU 34 -152.61 -68.19 13 B LEU 50 -52.76 80.07 14 A SER 0 -171.46 -50.01 14 A THR 7 -77.37 -157.12 14 A GLU 34 -124.55 -70.21 14 A LEU 50 -44.96 80.45 14 B SER 0 -173.00 -46.65 14 B THR 7 -76.54 -157.17 14 B LEU 15 -163.36 115.64 14 B GLU 34 -139.31 -64.76 14 B LEU 50 -56.32 79.80 15 A MET 1 177.61 112.58 15 A THR 7 -68.38 -157.31 15 A GLU 34 -140.96 -66.49 15 A PRO 37 -46.63 158.76 15 A LEU 50 -44.83 80.28 15 B MET 1 177.69 110.42 15 B THR 7 -70.62 -157.49 15 B GLU 34 -141.48 -66.74 15 B PRO 37 -47.17 157.98 15 B LEU 50 -52.50 80.46 16 A SER 0 56.05 -140.19 16 A MET 1 -82.23 48.81 16 A THR 7 -68.29 -156.88 16 A GLU 34 -138.91 -65.69 16 A LYS 48 -159.91 74.67 16 A LEU 50 -48.81 80.49 16 B SER 0 56.04 -140.61 16 B MET 1 -82.14 48.84 16 B THR 7 -67.80 -156.81 16 B GLU 34 -139.13 -64.03 16 B LYS 48 -159.81 74.82 16 B LEU 50 -55.89 79.72 UBIQUITIN Solution structure of a dimeric N-terminal fragment of human ubiquitin 1 N N 1 N N A THR 22 A THR 24 HELX_P A GLU 34 A GLU 36 1 1 13 B THR 22 B THR 24 HELX_P B GLU 34 B GLU 36 1 2 13 UBIQUITIN UBIQUITIN, DIMER, PROTEIN DISSECTION 1GJZ PDB 1 1GJZ UBIQ_HUMAN UNP 1 P02248 -1 0 1GJZ -1 0 1GJZ A 1 1 2 1 51 1GJZ 1 51 P02248 A 2 3 53 -1 0 1GJZ -1 0 1GJZ B 1 1 2 1 51 1GJZ 1 51 P02248 B 2 3 53 3 3 anti-parallel parallel parallel anti-parallel A THR 12 A THR 14 A GLU 16 A GLU 18 A GLN 2 A GLN 4 A LYS 6 A LYS 8 B ILE 44 B ILE 46 B ALA 46 B ALA 48 A ILE 44 A ILE 46 A ALA 46 A ALA 48 B GLN 2 B GLN 4 B LYS 6 B LYS 8 B THR 12 B THR 14 B GLU 16 B GLU 18 1 P 1