1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bolton, D.
Evans, P.A.
Stott, K.
Broadhurst, R.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
773
10.1006/JMBI.2001.5181
11733996
Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
FRAGMENT CONTAINS FIRST 51 RESIDUES OF HUMAN UBIQUITIN PRECEDED AT THE N-TERMINUS BY GLYCINE AND SERINE
5891.761
UBIQUITIN
RESIDUES 1-51
2
man
polymer
no
no
GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE
GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGEX-4T3
repository
Initial release
Version format compliance
Version format compliance
1
0
2001-12-13
1
1
2011-05-08
1
2
2011-07-13
DI-UBIQUITIN
STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C- TERMINAL HYDROLASES
STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSEMICELLES
TETRAUBIQUITIN
UBIQUITIN
UBIQUITIN
PDBE
Y
PDBE
2001-08-06
REL
STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED FRAGMENTS CONTAINING THE FIRST 51 RESIDUES OF HUMAN UBIQUITIN
LOW ENERGY, LEAST RESTRAINT VIOLATION
65
16
HNCACB
CBCA(CO)NH
15N-TOCSY-HSQC
15N-NOESY-HSQC
HCCH-TOCSY
13C-NOESY-HSQC
12C-FILTERED-NOESY-13C-HSQC
800MM SODIUM SULPHATE
7.0
pH
1
atm
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
simulated annealing
1
BRUNGER ET AL
refinement
CNS
0.9
structure solution
AZARA
structure solution
ANSIG3.3
500
Bruker
DRX
GLY
-1
n
1
GLY
-1
A
SER
0
n
2
SER
0
A
MET
1
n
3
MET
1
A
GLN
2
n
4
GLN
2
A
ILE
3
n
5
ILE
3
A
PHE
4
n
6
PHE
4
A
VAL
5
n
7
VAL
5
A
LYS
6
n
8
LYS
6
A
THR
7
n
9
THR
7
A
LEU
8
n
10
LEU
8
A
THR
9
n
11
THR
9
A
GLY
10
n
12
GLY
10
A
LYS
11
n
13
LYS
11
A
THR
12
n
14
THR
12
A
ILE
13
n
15
ILE
13
A
THR
14
n
16
THR
14
A
LEU
15
n
17
LEU
15
A
GLU
16
n
18
GLU
16
A
VAL
17
n
19
VAL
17
A
GLU
18
n
20
GLU
18
A
PRO
19
n
21
PRO
19
A
SER
20
n
22
SER
20
A
ASP
21
n
23
ASP
21
A
THR
22
n
24
THR
22
A
ILE
23
n
25
ILE
23
A
GLU
24
n
26
GLU
24
A
ASN
25
n
27
ASN
25
A
VAL
26
n
28
VAL
26
A
LYS
27
n
29
LYS
27
A
ALA
28
n
30
ALA
28
A
LYS
29
n
31
LYS
29
A
ILE
30
n
32
ILE
30
A
GLN
31
n
33
GLN
31
A
ASP
32
n
34
ASP
32
A
LYS
33
n
35
LYS
33
A
GLU
34
n
36
GLU
34
A
GLY
35
n
37
GLY
35
A
ILE
36
n
38
ILE
36
A
PRO
37
n
39
PRO
37
A
PRO
38
n
40
PRO
38
A
ASP
39
n
41
ASP
39
A
GLN
40
n
42
GLN
40
A
GLN
41
n
43
GLN
41
A
ARG
42
n
44
ARG
42
A
LEU
43
n
45
LEU
43
A
ILE
44
n
46
ILE
44
A
PHE
45
n
47
PHE
45
A
ALA
46
n
48
ALA
46
A
GLY
47
n
49
GLY
47
A
LYS
48
n
50
LYS
48
A
GLN
49
n
51
GLN
49
A
LEU
50
n
52
LEU
50
A
GLU
51
n
53
GLU
51
A
GLY
-1
n
1
GLY
-1
B
SER
0
n
2
SER
0
B
MET
1
n
3
MET
1
B
GLN
2
n
4
GLN
2
B
ILE
3
n
5
ILE
3
B
PHE
4
n
6
PHE
4
B
VAL
5
n
7
VAL
5
B
LYS
6
n
8
LYS
6
B
THR
7
n
9
THR
7
B
LEU
8
n
10
LEU
8
B
THR
9
n
11
THR
9
B
GLY
10
n
12
GLY
10
B
LYS
11
n
13
LYS
11
B
THR
12
n
14
THR
12
B
ILE
13
n
15
ILE
13
B
THR
14
n
16
THR
14
B
LEU
15
n
17
LEU
15
B
GLU
16
n
18
GLU
16
B
VAL
17
n
19
VAL
17
B
GLU
18
n
20
GLU
18
B
PRO
19
n
21
PRO
19
B
SER
20
n
22
SER
20
B
ASP
21
n
23
ASP
21
B
THR
22
n
24
THR
22
B
ILE
23
n
25
ILE
23
B
GLU
24
n
26
GLU
24
B
ASN
25
n
27
ASN
25
B
VAL
26
n
28
VAL
26
B
LYS
27
n
29
LYS
27
B
ALA
28
n
30
ALA
28
B
LYS
29
n
31
LYS
29
B
ILE
30
n
32
ILE
30
B
GLN
31
n
33
GLN
31
B
ASP
32
n
34
ASP
32
B
LYS
33
n
35
LYS
33
B
GLU
34
n
36
GLU
34
B
GLY
35
n
37
GLY
35
B
ILE
36
n
38
ILE
36
B
PRO
37
n
39
PRO
37
B
PRO
38
n
40
PRO
38
B
ASP
39
n
41
ASP
39
B
GLN
40
n
42
GLN
40
B
GLN
41
n
43
GLN
41
B
ARG
42
n
44
ARG
42
B
LEU
43
n
45
LEU
43
B
ILE
44
n
46
ILE
44
B
PHE
45
n
47
PHE
45
B
ALA
46
n
48
ALA
46
B
GLY
47
n
49
GLY
47
B
LYS
48
n
50
LYS
48
B
GLN
49
n
51
GLN
49
B
LEU
50
n
52
LEU
50
B
GLU
51
n
53
GLU
51
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
15
A
N
LEU
17
A
O
ILE
3
A
O
ILE
5
A
N
LYS
6
A
N
LYS
8
B
O
PHE
45
B
O
PHE
47
A
N
PHE
45
A
N
PHE
47
B
O
PHE
4
B
O
PHE
6
B
N
VAL
5
B
N
VAL
7
B
O
ILE
13
B
O
ILE
15
2
A
B
H
H
ALA
ARG
46
42
1.34
3
A
B
H
H
ARG
ALA
42
46
1.34
4
A
B
H
H
ARG
ALA
42
46
1.34
5
A
B
H
H
ALA
ARG
46
42
1.30
5
A
B
HB
HB
ILE
ILE
44
44
1.31
5
B
B
HG23
HE21
ILE
GLN
36
40
1.34
6
A
B
H
H
ARG
ALA
42
46
1.26
6
A
B
H
H
ALA
ARG
46
42
1.31
7
A
B
H
H
ARG
ALA
42
46
1.34
9
A
B
H
H
ARG
ALA
42
46
1.33
10
A
B
H
H
ALA
ARG
46
42
1.28
10
A
B
HB
HB
ILE
ILE
44
44
1.31
11
A
B
HB
HB
ILE
ILE
44
44
1.33
15
A
B
H
H
ALA
ARG
46
42
1.28
15
A
B
H
H
ARG
ALA
42
46
1.29
15
B
B
HA
HE21
ALA
GLN
28
31
1.33
1
A
MET
1
-167.02
52.89
1
A
GLU
34
-141.66
-70.69
1
A
LEU
50
-45.09
80.41
1
B
MET
1
-168.29
51.76
1
B
GLU
34
-143.31
-68.43
1
B
LEU
50
-54.33
79.92
2
A
SER
0
-67.97
-125.50
2
A
THR
7
-63.81
-156.63
2
A
LEU
15
-161.55
114.34
2
A
GLU
34
-145.46
-68.70
2
A
PRO
37
-39.80
143.14
2
A
LYS
48
-68.52
74.72
2
A
GLN
49
-65.41
96.29
2
A
LEU
50
-44.27
80.21
2
B
SER
0
-68.07
-125.20
2
B
THR
7
-68.86
-156.75
2
B
LEU
15
-160.66
113.22
2
B
GLU
34
-147.48
-61.93
2
B
LEU
50
-54.54
79.05
3
A
SER
0
-168.71
-47.35
3
A
MET
1
-172.67
121.56
3
A
THR
7
-70.41
-157.35
3
A
GLU
34
-140.52
-68.31
3
A
PRO
37
-49.88
155.72
3
A
LYS
48
-67.31
75.91
3
A
LEU
50
-44.71
84.00
3
B
SER
0
-171.41
-48.52
3
B
MET
1
-174.28
120.04
3
B
THR
7
-74.53
-157.00
3
B
LEU
15
-162.80
118.62
3
B
GLU
34
-141.27
-61.32
3
B
LYS
48
-67.27
75.94
3
B
LEU
50
-52.22
79.73
4
A
SER
0
56.03
-128.36
4
A
MET
1
-165.54
117.13
4
A
THR
7
-73.13
-157.20
4
A
GLU
34
-135.08
-66.13
4
A
LYS
48
-67.19
74.93
4
A
GLN
49
-66.73
97.93
4
A
LEU
50
-44.88
80.74
4
B
SER
0
56.88
-127.82
4
B
MET
1
-166.64
115.74
4
B
THR
7
-73.29
-157.39
4
B
GLU
34
-136.96
-65.86
4
B
LEU
50
-56.90
79.52
5
A
SER
0
-65.85
-120.09
5
A
THR
7
-69.16
-156.75
5
A
GLU
34
-169.05
-109.73
5
A
PRO
37
-45.84
150.09
5
A
LYS
48
-159.74
82.29
5
A
GLN
49
-65.82
98.07
5
A
LEU
50
-44.14
81.08
5
B
SER
0
-65.69
-121.15
5
B
THR
7
-72.72
-156.75
5
B
GLU
34
-157.72
-90.38
5
B
LYS
48
-160.24
111.40
5
B
LEU
50
-59.62
79.40
6
A
SER
0
-67.46
-125.90
6
A
THR
7
-67.70
-159.55
6
A
LEU
15
-162.32
115.10
6
A
GLU
34
-131.35
-89.37
6
A
LYS
48
-161.49
73.80
6
A
LEU
50
-45.38
80.12
6
B
SER
0
-67.75
-125.26
6
B
MET
1
-163.54
115.30
6
B
THR
7
-69.96
-160.09
6
B
LEU
15
-162.94
112.97
6
B
GLU
34
-144.89
-68.25
6
B
LYS
48
-160.27
73.97
6
B
LEU
50
-50.47
80.43
7
A
MET
1
-163.83
57.05
7
A
THR
7
-68.49
-156.54
7
A
LEU
15
-163.94
114.05
7
A
GLU
34
-132.37
-67.33
7
A
LYS
48
-69.50
75.28
7
A
LEU
50
-44.99
80.40
7
B
MET
1
-156.37
57.60
7
B
THR
7
-69.53
-156.94
7
B
LEU
15
-161.35
113.75
7
B
GLU
34
-135.55
-67.19
7
B
LYS
48
-69.60
75.89
7
B
LEU
50
-49.62
80.36
8
A
SER
0
-68.77
-135.68
8
A
THR
7
-67.21
-158.20
8
A
GLU
34
-146.78
-84.48
8
A
GLN
49
-67.48
90.57
8
A
LEU
50
-45.93
79.93
8
B
SER
0
-68.47
-133.66
8
B
THR
7
-68.44
-157.77
8
B
GLU
34
-147.41
-81.15
8
B
LEU
50
-59.61
79.98
9
A
MET
1
-163.42
49.02
9
A
THR
7
-70.48
-157.56
9
A
GLU
34
-144.89
-67.20
9
A
LEU
50
-47.33
80.03
9
B
MET
1
-155.87
51.13
9
B
THR
7
-71.05
-157.64
9
B
GLU
34
-141.52
-60.55
9
B
LEU
50
-52.74
80.01
10
A
MET
1
178.54
106.95
10
A
THR
7
-72.48
-157.62
10
A
GLU
34
-169.22
-102.82
10
A
LYS
48
-69.20
74.59
10
A
LEU
50
-45.05
80.45
10
B
MET
1
179.67
106.61
10
B
THR
7
-77.54
-157.30
10
B
LEU
15
-162.53
115.04
10
B
GLU
34
-168.53
-106.92
10
B
PRO
37
-38.89
146.30
10
B
LYS
48
-69.19
74.89
10
B
LEU
50
-52.85
80.21
11
A
MET
1
-175.54
115.73
11
A
THR
7
-71.43
-157.00
11
A
LEU
15
-160.58
114.05
11
A
GLU
34
-153.16
-90.00
11
A
LEU
50
-44.90
80.28
11
B
MET
1
179.56
108.45
11
B
THR
7
-68.61
-157.02
11
B
LEU
15
-162.72
112.84
11
B
GLU
34
-152.03
-87.23
11
B
LEU
50
-51.45
80.30
12
A
GLU
34
-135.63
-60.18
12
A
GLN
49
-66.34
99.80
12
A
LEU
50
-44.91
80.55
12
B
GLU
34
-138.14
-55.11
12
B
LEU
50
-53.12
80.26
13
A
SER
0
-164.25
-126.96
13
A
MET
1
-160.19
117.38
13
A
THR
7
-66.53
-159.95
13
A
GLU
34
-150.27
-79.59
13
A
GLN
49
-65.40
99.46
13
A
LEU
50
-44.79
80.48
13
B
SER
0
-164.40
-124.42
13
B
MET
1
-163.32
117.16
13
B
THR
7
-70.57
-157.39
13
B
LEU
15
-164.20
114.62
13
B
GLU
34
-152.61
-68.19
13
B
LEU
50
-52.76
80.07
14
A
SER
0
-171.46
-50.01
14
A
THR
7
-77.37
-157.12
14
A
GLU
34
-124.55
-70.21
14
A
LEU
50
-44.96
80.45
14
B
SER
0
-173.00
-46.65
14
B
THR
7
-76.54
-157.17
14
B
LEU
15
-163.36
115.64
14
B
GLU
34
-139.31
-64.76
14
B
LEU
50
-56.32
79.80
15
A
MET
1
177.61
112.58
15
A
THR
7
-68.38
-157.31
15
A
GLU
34
-140.96
-66.49
15
A
PRO
37
-46.63
158.76
15
A
LEU
50
-44.83
80.28
15
B
MET
1
177.69
110.42
15
B
THR
7
-70.62
-157.49
15
B
GLU
34
-141.48
-66.74
15
B
PRO
37
-47.17
157.98
15
B
LEU
50
-52.50
80.46
16
A
SER
0
56.05
-140.19
16
A
MET
1
-82.23
48.81
16
A
THR
7
-68.29
-156.88
16
A
GLU
34
-138.91
-65.69
16
A
LYS
48
-159.91
74.67
16
A
LEU
50
-48.81
80.49
16
B
SER
0
56.04
-140.61
16
B
MET
1
-82.14
48.84
16
B
THR
7
-67.80
-156.81
16
B
GLU
34
-139.13
-64.03
16
B
LYS
48
-159.81
74.82
16
B
LEU
50
-55.89
79.72
UBIQUITIN
Solution structure of a dimeric N-terminal fragment of human ubiquitin
1
N
N
1
N
N
A
THR
22
A
THR
24
HELX_P
A
GLU
34
A
GLU
36
1
1
13
B
THR
22
B
THR
24
HELX_P
B
GLU
34
B
GLU
36
1
2
13
UBIQUITIN
UBIQUITIN, DIMER, PROTEIN DISSECTION
1GJZ
PDB
1
1GJZ
UBIQ_HUMAN
UNP
1
P02248
-1
0
1GJZ
-1
0
1GJZ
A
1
1
2
1
51
1GJZ
1
51
P02248
A
2
3
53
-1
0
1GJZ
-1
0
1GJZ
B
1
1
2
1
51
1GJZ
1
51
P02248
B
2
3
53
3
3
anti-parallel
parallel
parallel
anti-parallel
A
THR
12
A
THR
14
A
GLU
16
A
GLU
18
A
GLN
2
A
GLN
4
A
LYS
6
A
LYS
8
B
ILE
44
B
ILE
46
B
ALA
46
B
ALA
48
A
ILE
44
A
ILE
46
A
ALA
46
A
ALA
48
B
GLN
2
B
GLN
4
B
LYS
6
B
LYS
8
B
THR
12
B
THR
14
B
GLU
16
B
GLU
18
1
P 1