0.017615 0.010170 0.000000 0.000000 0.020340 0.000000 0.000000 0.000000 0.017117 0.00000 0.00000 0.00000 Strelkov, S.V. Herrmann, H. Geisler, N. Zimbelmann, R. Aebi, U. Burkhard, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 56.770 56.770 58.420 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N O N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 S C N 131 N C N 132 N C N 133 N C N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N N N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C Y 200 N C Y 201 N C Y 202 N C Y 203 N C Y 204 N C Y 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N O N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N S N 233 N O N 234 N O N 235 N O N 236 N O N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing Y 195 N doub Y 196 N sing Y 197 N sing N 198 N sing Y 199 N doub N 200 N sing Y 201 N doub N 202 N sing Y 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing UK Embo J. EMJODG 0897 0261-4189 21 1255 10.1093/EMBOJ/21.6.1255 11889032 Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly. 2002 UK J.Mol.Biol. JMOBAK 0070 0022-2836 306 773 10.1006/JMBI.2001.4442 11243787 Divide-and-Conquer Crystallographic Approach Towards an Atomic Structure of Intermediate Filaments 2001 10.2210/pdb1gk7/pdb pdb_00001gk7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS IMAGE PLATE 1999-04-15 SINGLE WAVELENGTH M x-ray 1 0.9 1.0 X11 EMBL/DESY, HAMBURG 0.9 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 TWO EXTRA RESIDUES, GS, AT THE N-TERMINUS ARE RESULT OF THE CLONING PROCEDURE 4654.214 VIMENTIN 1A, RESIDUES 102-138 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 35 nat water no no GSNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL GSNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 469008 ESCHERICHIA COLI BL21(DE3) 1 2.9 59 THE SEARCH MODEL WAS A SINGLE CHAIN 6.50 2.0M AMMONIUM ACETATE, 10%(V/V) DIOXANE, 0.1M MES/NA, PH6.5, pH 6.50 diffrn_source pdbx_struct_special_symmetry chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Derived calculations Data collection Database references Other Refinement description 1 0 2002-03-15 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-07-24 1 4 2023-12-13 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2) HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B) PDBE Y PDBE 2001-08-08 REL REL SO4 SULFATE ION HOH water THE RESIDUE NUMBERING USED IN THE LITERATURE FOR VIMENTIN DIFFERS BY +1 FROM THE NUMBERING USED IN SWISSPROT ENTRY P08670 THE FRAGMENT CONTAINS RESIDUES 102 TO 138 AND TWO EXOGENOUS RESIDUES, GS, AT THE N-TERMINUS 2ZTA PDB experimental model SO4 1139 2 SO4 SO4 1139 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A GLY 100 n 1 GLY 100 A SER 101 n 2 SER 101 A ASN 102 n 3 ASN 102 A GLU 103 n 4 GLU 103 A LYS 104 n 5 LYS 104 A VAL 105 n 6 VAL 105 A GLU 106 n 7 GLU 106 A LEU 107 n 8 LEU 107 A GLN 108 n 9 GLN 108 A GLU 109 n 10 GLU 109 A LEU 110 n 11 LEU 110 A ASN 111 n 12 ASN 111 A ASP 112 n 13 ASP 112 A ARG 113 n 14 ARG 113 A PHE 114 n 15 PHE 114 A ALA 115 n 16 ALA 115 A ASN 116 n 17 ASN 116 A TYR 117 n 18 TYR 117 A ILE 118 n 19 ILE 118 A ASP 119 n 20 ASP 119 A LYS 120 n 21 LYS 120 A VAL 121 n 22 VAL 121 A ARG 122 n 23 ARG 122 A PHE 123 n 24 PHE 123 A LEU 124 n 25 LEU 124 A GLU 125 n 26 GLU 125 A GLN 126 n 27 GLN 126 A GLN 127 n 28 GLN 127 A ASN 128 n 29 ASN 128 A LYS 129 n 30 LYS 129 A ILE 130 n 31 ILE 130 A LEU 131 n 32 LEU 131 A LEU 132 n 33 LEU 132 A ALA 133 n 34 ALA 133 A GLU 134 n 35 GLU 134 A LEU 135 n 36 LEU 135 A GLU 136 n 37 GLU 136 A GLN 137 n 38 GLN 137 A LEU 138 n 39 LEU 138 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 2026 C HOH 1 A A OE2 OE1 GLU GLU 103 106 1.60 1 A A OE2 NH1 GLU ARG 109 113 1.91 B 1 A A CG O GLU HOH 134 2024 2.07 1 12.09 1.20 123.30 135.39 A A A OE1 CD OE2 GLU GLU GLU 134 134 134 N 1 -12.32 2.00 118.30 105.98 A A A CG CD OE2 GLU GLU GLU 134 134 134 N 1 A A OE1 OE1 GLU GLU 134 134 1.36 1_555 4_765 1 A A O O4 ASN SO4 102 1139 2.12 1_555 11_555 0.958 0.957 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.216 0.197 0.198 1.40 49.39 461 10979 4.000 99.7 1.967 0.041 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.062 0.057 0.80 0.80 1.40 2ZTA MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.40 49.39 35 368 5 0 328 0.020 0.021 341 0.001 0.020 310 2.034 1.996 456 0.856 3.000 725 0.116 0.200 50 0.009 0.020 371 0.004 0.020 64 0.344 0.300 107 0.222 0.300 305 0.286 0.500 19 0.550 0.000 1 0.423 0.300 36 0.419 0.300 53 0.220 0.500 10 2.254 1.500 195 3.323 2.000 312 5.128 3.000 146 7.867 4.500 144 0.2480 0.1990 1.44 44 769 20 1.400 50.000 1GK7 11440 0.03700 1 17.0000 10.300 99.7 0.56000 1.40 1.45 1.900 1 5.50 99.6 refinement REFMAC 5.0 data reduction DENZO data scaling SCALEPACK phasing CCP4 HUMAN VIMENTIN COIL 1A FRAGMENT (1A) 1 N N 2 N N 3 N N A GLY 100 A GLY 1 HELX_P A LEU 138 A LEU 39 1 1 39 VIMENTIN VIMENTIN, INTERMEDIATE FILAMENT, HEPTAD REPEAT 1GK7 PDB 1 1GK7 VIME_HUMAN UNP 1 P08670 100 101 1GK7 100 101 1GK7 A 1 1 2 101 137 1GK7 102 138 P08670 A 2 3 39 BINDING SITE FOR RESIDUE SO4 A1139 Software 6 A GLY 100 A GLY 1 6 1_555 A SER 101 A SER 2 6 1_555 A ASN 102 A ASN 3 6 1_555 A GLU 103 A GLU 4 6 1_555 A VAL 105 A VAL 6 6 1_555 A GLU 106 A GLU 7 6 1_555 180 P 62 2 2