0.017883
0.000000
0.000000
0.000000
0.013831
0.000000
0.000000
0.000000
0.009622
0.00000
0.00000
0.00000
Kvansakul, M.
Hopf, M.
Ries, A.
Timpl, R.
Hohenester, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
55.920
72.300
103.930
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
N
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
20
5342
10.1093/EMBOJ/20.19.5342
11574465
Structural Basis for the High-Affinity Interaction of Nidogen-1 with Immunoglobulin-Like Domain 3 of Perlecan
2001
US
Nat.Struct.Biol .
NSBIEW
2024
1072-8368
8
634
10.1038/89683
11427896
Crystal Structure and Mutational Analysis of a Perlecan-Binding Fragment of Nidogen-1
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
529
10.1006/JMBI.2001.4878
11493006
Mapping of Binding Sites for Nidogens, Fibulin-2, Fibronectin and Heparin to Different Ig Modules of Perlecan
2001
10.2210/pdb1gl4/pdb
pdb_00001gl4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-11-06
QUANTUM4
SINGLE WAVELENGTH
M
x-ray
1
0.87
1.0
PX9.6
SRS
0.87
SYNCHROTRON
SRS BEAMLINE PX9.6
31350.930
NIDOGEN-1
G2 RESIDUES 385-665
1
man
polymer
VECTOR-DERIVED N-TERMINAL APLA
10562.085
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN
IG3 RESIDUES 1765-1858
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
174
nat
water
ENTACTIN
PERLECAN, HSPG, PLC
no
no
APLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYV
VMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDE
HGHLTISTELEGRVPQIPYGASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQECAHDD
ARPALPSTQQLSVDSVFVLYNKEERILRYALSNSIGPVRDGSPDA
APLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYV
VMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDE
HGHLTISTELEGRVPQIPYGASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQECAHDD
ARPALPSTQQLSVDSVFVLYNKEERILRYALSNSIGPVRDGSPDA
A
polypeptide(L)
no
no
APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCT
GSNMFAMDQGTATLHVQV
APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCT
GSNMFAMDQGTATLHVQV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MOUSE
sample
10090
MUS MUSCULUS
293-EBNA
9606
HOMO SAPIENS
PCEP-PU
MOUSE
sample
VECTOR-DERIVED N-TERMINAL APLA
10090
MUS MUSCULUS
293-EBNA
9606
HOMO SAPIENS
PCEP-PU
1
2.46
50.1
7.50
10% PEG 6000, 5% MPD, 0.1 M HEPES PH 7.5
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-11-28
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
DOMAIN G2 OF MOUSE NIDOGEN-1
SHEET
THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
TWO SHEETS ARE DEFINED.
PDBE
Y
PDBE
2001-08-23
REL
REL
ZN
ZINC ION
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
1H4U
PDB
experimental model
ZN
1632
3
ZN
ZN
1632
A
EPE
2858
4
EPE
EPE
2858
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2037
5
HOH
HOH
2037
B
HOH
2038
5
HOH
HOH
2038
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2040
5
HOH
HOH
2040
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2043
5
HOH
HOH
2043
B
HOH
2044
5
HOH
HOH
2044
B
n
1
353
A
n
2
354
A
n
3
355
A
n
4
356
A
n
5
357
A
n
6
358
A
THR
359
n
7
THR
359
A
CYS
360
n
8
CYS
360
A
ALA
361
n
9
ALA
361
A
ASN
362
n
10
ASN
362
A
ASN
363
n
11
ASN
363
A
ARG
364
n
12
ARG
364
A
HIS
365
n
13
HIS
365
A
GLN
366
n
14
GLN
366
A
CYS
367
n
15
CYS
367
A
SER
368
n
16
SER
368
A
VAL
369
n
17
VAL
369
A
HIS
370
n
18
HIS
370
A
ALA
371
n
19
ALA
371
A
GLU
372
n
20
GLU
372
A
CYS
373
n
21
CYS
373
A
ARG
374
n
22
ARG
374
A
ASP
375
n
23
ASP
375
A
TYR
376
n
24
TYR
376
A
ALA
377
n
25
ALA
377
A
THR
378
n
26
THR
378
A
GLY
379
n
27
GLY
379
A
PHE
380
n
28
PHE
380
A
CYS
381
n
29
CYS
381
A
CYS
382
n
30
CYS
382
A
ARG
383
n
31
ARG
383
A
CYS
384
n
32
CYS
384
A
VAL
385
n
33
VAL
385
A
ALA
386
n
34
ALA
386
A
ASN
387
n
35
ASN
387
A
TYR
388
n
36
TYR
388
A
THR
389
n
37
THR
389
A
GLY
390
n
38
GLY
390
A
ASN
391
n
39
ASN
391
A
GLY
392
n
40
GLY
392
A
ARG
393
n
41
ARG
393
A
GLN
394
n
42
GLN
394
A
CYS
395
n
43
CYS
395
A
VAL
396
n
44
VAL
396
A
ALA
397
n
45
ALA
397
A
GLU
398
n
46
GLU
398
A
GLY
399
n
47
GLY
399
A
SER
400
n
48
SER
400
A
PRO
401
n
49
PRO
401
A
GLN
402
n
50
GLN
402
A
ARG
403
n
51
ARG
403
A
VAL
404
n
52
VAL
404
A
ASN
405
n
53
ASN
405
A
GLY
406
n
54
GLY
406
A
LYS
407
n
55
LYS
407
A
VAL
408
n
56
VAL
408
A
LYS
409
n
57
LYS
409
A
GLY
410
n
58
GLY
410
A
ARG
411
n
59
ARG
411
A
ILE
412
n
60
ILE
412
A
PHE
413
n
61
PHE
413
A
VAL
414
n
62
VAL
414
A
GLY
415
n
63
GLY
415
A
SER
416
n
64
SER
416
A
SER
417
n
65
SER
417
A
GLN
418
n
66
GLN
418
A
VAL
419
n
67
VAL
419
A
PRO
420
n
68
PRO
420
A
VAL
421
n
69
VAL
421
A
VAL
422
n
70
VAL
422
A
PHE
423
n
71
PHE
423
A
GLU
424
n
72
GLU
424
A
ASN
425
n
73
ASN
425
A
THR
426
n
74
THR
426
A
ASP
427
n
75
ASP
427
A
LEU
428
n
76
LEU
428
A
HIS
429
n
77
HIS
429
A
SER
430
n
78
SER
430
A
TYR
431
n
79
TYR
431
A
VAL
432
n
80
VAL
432
A
VAL
433
n
81
VAL
433
A
MET
434
n
82
MET
434
A
ASN
435
n
83
ASN
435
A
HIS
436
n
84
HIS
436
A
GLY
437
n
85
GLY
437
A
ARG
438
n
86
ARG
438
A
SER
439
n
87
SER
439
A
TYR
440
n
88
TYR
440
A
THR
441
n
89
THR
441
A
ALA
442
n
90
ALA
442
A
ILE
443
n
91
ILE
443
A
SER
444
n
92
SER
444
A
THR
445
n
93
THR
445
A
ILE
446
n
94
ILE
446
A
PRO
447
n
95
PRO
447
A
GLU
448
n
96
GLU
448
A
THR
449
n
97
THR
449
A
VAL
450
n
98
VAL
450
A
GLY
451
n
99
GLY
451
A
TYR
452
n
100
TYR
452
A
SER
453
n
101
SER
453
A
LEU
454
n
102
LEU
454
A
LEU
455
n
103
LEU
455
A
PRO
456
n
104
PRO
456
A
LEU
457
n
105
LEU
457
A
ALA
458
n
106
ALA
458
A
PRO
459
n
107
PRO
459
A
ILE
460
n
108
ILE
460
A
GLY
461
n
109
GLY
461
A
GLY
462
n
110
GLY
462
A
ILE
463
n
111
ILE
463
A
ILE
464
n
112
ILE
464
A
GLY
465
n
113
GLY
465
A
TRP
466
n
114
TRP
466
A
MET
467
n
115
MET
467
A
PHE
468
n
116
PHE
468
A
ALA
469
n
117
ALA
469
A
VAL
470
n
118
VAL
470
A
GLU
471
n
119
GLU
471
A
GLN
472
n
120
GLN
472
A
ASP
473
n
121
ASP
473
A
GLY
474
n
122
GLY
474
A
PHE
475
n
123
PHE
475
A
LYS
476
n
124
LYS
476
A
ASN
477
n
125
ASN
477
A
GLY
478
n
126
GLY
478
A
PHE
479
n
127
PHE
479
A
SER
480
n
128
SER
480
A
ILE
481
n
129
ILE
481
A
THR
482
n
130
THR
482
A
GLY
483
n
131
GLY
483
A
GLY
484
n
132
GLY
484
A
GLU
485
n
133
GLU
485
A
PHE
486
n
134
PHE
486
A
THR
487
n
135
THR
487
A
ARG
488
n
136
ARG
488
A
GLN
489
n
137
GLN
489
A
ALA
490
n
138
ALA
490
A
GLU
491
n
139
GLU
491
A
VAL
492
n
140
VAL
492
A
THR
493
n
141
THR
493
A
PHE
494
n
142
PHE
494
A
LEU
495
n
143
LEU
495
A
GLY
496
n
144
GLY
496
A
HIS
497
n
145
HIS
497
A
PRO
498
n
146
PRO
498
A
GLY
499
n
147
GLY
499
A
LYS
500
n
148
LYS
500
A
LEU
501
n
149
LEU
501
A
VAL
502
n
150
VAL
502
A
LEU
503
n
151
LEU
503
A
LYS
504
n
152
LYS
504
A
GLN
505
n
153
GLN
505
A
GLN
506
n
154
GLN
506
A
PHE
507
n
155
PHE
507
A
SER
508
n
156
SER
508
A
GLY
509
n
157
GLY
509
A
ILE
510
n
158
ILE
510
A
ASP
511
n
159
ASP
511
A
GLU
512
n
160
GLU
512
A
HIS
513
n
161
HIS
513
A
GLY
514
n
162
GLY
514
A
HIS
515
n
163
HIS
515
A
LEU
516
n
164
LEU
516
A
THR
517
n
165
THR
517
A
ILE
518
n
166
ILE
518
A
SER
519
n
167
SER
519
A
THR
520
n
168
THR
520
A
GLU
521
n
169
GLU
521
A
LEU
522
n
170
LEU
522
A
GLU
523
n
171
GLU
523
A
GLY
524
n
172
GLY
524
A
ARG
525
n
173
ARG
525
A
VAL
526
n
174
VAL
526
A
PRO
527
n
175
PRO
527
A
GLN
528
n
176
GLN
528
A
ILE
529
n
177
ILE
529
A
PRO
530
n
178
PRO
530
A
TYR
531
n
179
TYR
531
A
GLY
532
n
180
GLY
532
A
ALA
533
n
181
ALA
533
A
SER
534
n
182
SER
534
A
VAL
535
n
183
VAL
535
A
HIS
536
n
184
HIS
536
A
ILE
537
n
185
ILE
537
A
GLU
538
n
186
GLU
538
A
PRO
539
n
187
PRO
539
A
TYR
540
n
188
TYR
540
A
THR
541
n
189
THR
541
A
GLU
542
n
190
GLU
542
A
LEU
543
n
191
LEU
543
A
TYR
544
n
192
TYR
544
A
HIS
545
n
193
HIS
545
A
TYR
546
n
194
TYR
546
A
SER
547
n
195
SER
547
A
SER
548
n
196
SER
548
A
SER
549
n
197
SER
549
A
VAL
550
n
198
VAL
550
A
ILE
551
n
199
ILE
551
A
THR
552
n
200
THR
552
A
SER
553
n
201
SER
553
A
SER
554
n
202
SER
554
A
SER
555
n
203
SER
555
A
THR
556
n
204
THR
556
A
ARG
557
n
205
ARG
557
A
GLU
558
n
206
GLU
558
A
TYR
559
n
207
TYR
559
A
THR
560
n
208
THR
560
A
VAL
561
n
209
VAL
561
A
MET
562
n
210
MET
562
A
GLU
563
n
211
GLU
563
A
PRO
564
n
212
PRO
564
A
ASP
565
n
213
ASP
565
A
GLN
566
n
214
GLN
566
A
ASP
567
n
215
ASP
567
A
GLY
568
n
216
GLY
568
A
ALA
569
n
217
ALA
569
A
ALA
570
n
218
ALA
570
A
PRO
571
n
219
PRO
571
A
SER
572
n
220
SER
572
A
HIS
573
n
221
HIS
573
A
THR
574
n
222
THR
574
A
HIS
575
n
223
HIS
575
A
ILE
576
n
224
ILE
576
A
TYR
577
n
225
TYR
577
A
GLN
578
n
226
GLN
578
A
TRP
579
n
227
TRP
579
A
ARG
580
n
228
ARG
580
A
GLN
581
n
229
GLN
581
A
THR
582
n
230
THR
582
A
ILE
583
n
231
ILE
583
A
THR
584
n
232
THR
584
A
PHE
585
n
233
PHE
585
A
GLN
586
n
234
GLN
586
A
GLU
587
n
235
GLU
587
A
CYS
588
n
236
CYS
588
A
ALA
589
n
237
ALA
589
A
HIS
590
n
238
HIS
590
A
ASP
591
n
239
ASP
591
A
ASP
592
n
240
ASP
592
A
ALA
593
n
241
ALA
593
A
ARG
594
n
242
ARG
594
A
PRO
595
n
243
PRO
595
A
ALA
596
n
244
ALA
596
A
LEU
597
n
245
LEU
597
A
PRO
598
n
246
PRO
598
A
SER
599
n
247
SER
599
A
THR
600
n
248
THR
600
A
GLN
601
n
249
GLN
601
A
GLN
602
n
250
GLN
602
A
LEU
603
n
251
LEU
603
A
SER
604
n
252
SER
604
A
VAL
605
n
253
VAL
605
A
ASP
606
n
254
ASP
606
A
SER
607
n
255
SER
607
A
VAL
608
n
256
VAL
608
A
PHE
609
n
257
PHE
609
A
VAL
610
n
258
VAL
610
A
LEU
611
n
259
LEU
611
A
TYR
612
n
260
TYR
612
A
ASN
613
n
261
ASN
613
A
LYS
614
n
262
LYS
614
A
GLU
615
n
263
GLU
615
A
GLU
616
n
264
GLU
616
A
ARG
617
n
265
ARG
617
A
ILE
618
n
266
ILE
618
A
LEU
619
n
267
LEU
619
A
ARG
620
n
268
ARG
620
A
TYR
621
n
269
TYR
621
A
ALA
622
n
270
ALA
622
A
LEU
623
n
271
LEU
623
A
SER
624
n
272
SER
624
A
ASN
625
n
273
ASN
625
A
SER
626
n
274
SER
626
A
ILE
627
n
275
ILE
627
A
GLY
628
n
276
GLY
628
A
PRO
629
n
277
PRO
629
A
VAL
630
n
278
VAL
630
A
ARG
631
n
279
ARG
631
A
n
280
632
A
n
281
633
A
n
282
634
A
n
283
635
A
n
284
636
A
n
285
637
A
n
1
1761
B
n
2
1762
B
n
3
1763
B
n
4
1764
B
n
5
1765
B
n
6
1766
B
n
7
1767
B
n
8
1768
B
PRO
1769
n
9
PRO
1769
B
ILE
1770
n
10
ILE
1770
B
MET
1771
n
11
MET
1771
B
VAL
1772
n
12
VAL
1772
B
THR
1773
n
13
THR
1773
B
VAL
1774
n
14
VAL
1774
B
GLU
1775
n
15
GLU
1775
B
GLU
1776
n
16
GLU
1776
B
GLN
1777
n
17
GLN
1777
B
ARG
1778
n
18
ARG
1778
B
SER
1779
n
19
SER
1779
B
GLN
1780
n
20
GLN
1780
B
SER
1781
n
21
SER
1781
B
VAL
1782
n
22
VAL
1782
B
ARG
1783
n
23
ARG
1783
B
PRO
1784
n
24
PRO
1784
B
GLY
1785
n
25
GLY
1785
B
ALA
1786
n
26
ALA
1786
B
ASP
1787
n
27
ASP
1787
B
VAL
1788
n
28
VAL
1788
B
THR
1789
n
29
THR
1789
B
PHE
1790
n
30
PHE
1790
B
ILE
1791
n
31
ILE
1791
B
CYS
1792
n
32
CYS
1792
B
THR
1793
n
33
THR
1793
B
ALA
1794
n
34
ALA
1794
B
LYS
1795
n
35
LYS
1795
B
SER
1796
n
36
SER
1796
B
LYS
1797
n
37
LYS
1797
B
SER
1798
n
38
SER
1798
B
PRO
1799
n
39
PRO
1799
B
ALA
1800
n
40
ALA
1800
B
TYR
1801
n
41
TYR
1801
B
THR
1802
n
42
THR
1802
B
LEU
1803
n
43
LEU
1803
B
VAL
1804
n
44
VAL
1804
B
TRP
1805
n
45
TRP
1805
B
THR
1806
n
46
THR
1806
B
ARG
1807
n
47
ARG
1807
B
LEU
1808
n
48
LEU
1808
B
HIS
1809
n
49
HIS
1809
B
ASN
1810
n
50
ASN
1810
B
GLY
1811
n
51
GLY
1811
B
LYS
1812
n
52
LYS
1812
B
LEU
1813
n
53
LEU
1813
B
PRO
1814
n
54
PRO
1814
B
SER
1815
n
55
SER
1815
B
ARG
1816
n
56
ARG
1816
B
ALA
1817
n
57
ALA
1817
B
MET
1818
n
58
MET
1818
B
ASP
1819
n
59
ASP
1819
B
PHE
1820
n
60
PHE
1820
B
ASN
1821
n
61
ASN
1821
B
GLY
1822
n
62
GLY
1822
B
ILE
1823
n
63
ILE
1823
B
LEU
1824
n
64
LEU
1824
B
THR
1825
n
65
THR
1825
B
ILE
1826
n
66
ILE
1826
B
ARG
1827
n
67
ARG
1827
B
ASN
1828
n
68
ASN
1828
B
VAL
1829
n
69
VAL
1829
B
GLN
1830
n
70
GLN
1830
B
PRO
1831
n
71
PRO
1831
B
SER
1832
n
72
SER
1832
B
ASP
1833
n
73
ASP
1833
B
ALA
1834
n
74
ALA
1834
B
GLY
1835
n
75
GLY
1835
B
THR
1836
n
76
THR
1836
B
TYR
1837
n
77
TYR
1837
B
VAL
1838
n
78
VAL
1838
B
CYS
1839
n
79
CYS
1839
B
THR
1840
n
80
THR
1840
B
GLY
1841
n
81
GLY
1841
B
SER
1842
n
82
SER
1842
B
ASN
1843
n
83
ASN
1843
B
MET
1844
n
84
MET
1844
B
PHE
1845
n
85
PHE
1845
B
ALA
1846
n
86
ALA
1846
B
MET
1847
n
87
MET
1847
B
ASP
1848
n
88
ASP
1848
B
GLN
1849
n
89
GLN
1849
B
GLY
1850
n
90
GLY
1850
B
THR
1851
n
91
THR
1851
B
ALA
1852
n
92
ALA
1852
B
THR
1853
n
93
THR
1853
B
LEU
1854
n
94
LEU
1854
B
HIS
1855
n
95
HIS
1855
B
VAL
1856
n
96
VAL
1856
B
GLN
1857
n
97
GLN
1857
B
n
98
1858
B
author_and_software_defined_assembly
PQS
2
dimeric
A
ASP
511
A
OD2
ASP
159
1_555
A
ZN
1632
C
ZN
ZN
1_555
A
HIS
513
A
ND1
HIS
161
1_555
115.5
A
ASP
511
A
OD2
ASP
159
1_555
A
ZN
1632
C
ZN
ZN
1_555
A
HIS
515
A
ND1
HIS
163
1_555
112.0
A
HIS
513
A
ND1
HIS
161
1_555
A
ZN
1632
C
ZN
ZN
1_555
A
HIS
515
A
ND1
HIS
163
1_555
116.1
A
ASP
511
A
OD2
ASP
159
1_555
A
ZN
1632
C
ZN
ZN
1_555
B
HIS
1809
B
NE2
HIS
49
4_556
102.0
A
HIS
513
A
ND1
HIS
161
1_555
A
ZN
1632
C
ZN
ZN
1_555
B
HIS
1809
B
NE2
HIS
49
4_556
103.5
A
HIS
515
A
ND1
HIS
163
1_555
A
ZN
1632
C
ZN
ZN
1_555
B
HIS
1809
B
NE2
HIS
49
4_556
105.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
374
A
N
ARG
22
A
O
CYS
381
A
O
CYS
29
A
N
THR
389
A
N
THR
37
A
O
VAL
396
A
O
VAL
44
A
N
VAL
470
A
N
VAL
118
A
O
ASN
625
A
O
ASN
273
A
N
LEU
623
A
N
LEU
271
A
O
SER
439
A
O
SER
87
A
N
SER
444
A
N
SER
92
A
O
ASP
427
A
O
ASP
75
A
N
VAL
432
A
N
VAL
80
A
O
GLN
402
A
O
GLN
50
A
N
VAL
470
A
N
VAL
118
A
O
ASN
625
A
O
ASN
273
A
N
GLY
628
A
N
GLY
276
A
O
GLN
602
A
O
GLN
250
A
N
VAL
605
A
N
VAL
253
A
O
TYR
540
A
O
TYR
188
A
N
SER
547
A
N
SER
195
A
O
VAL
550
A
O
VAL
198
B
N
THR
1773
B
N
THR
13
B
O
THR
1793
B
O
THR
33
B
N
PHE
1790
B
N
PHE
30
B
O
LEU
1824
B
O
LEU
64
B
N
THR
1825
B
N
THR
65
B
O
MET
1818
B
O
MET
58
B
N
GLN
1780
B
N
GLN
20
B
O
THR
1853
B
O
THR
93
B
N
LEU
1854
B
N
LEU
94
B
O
GLY
1835
B
O
GLY
75
B
N
SER
1842
B
N
SER
82
B
O
THR
1802
B
O
THR
42
1
B
CB
ARG
1783
B
CB
ARG
23
0
Y
1
B
CG
ARG
1783
B
CG
ARG
23
0
Y
1
B
CD
ARG
1783
B
CD
ARG
23
0
Y
1
B
NE
ARG
1783
B
NE
ARG
23
0
Y
1
B
CZ
ARG
1783
B
CZ
ARG
23
0
Y
1
B
NH1
ARG
1783
B
NH1
ARG
23
0
Y
1
B
NH2
ARG
1783
B
NH2
ARG
23
0
Y
1
A
ALA
353
A
ALA
1
1
Y
1
A
PRO
354
A
PRO
2
1
Y
1
A
LEU
355
A
LEU
3
1
Y
1
A
ALA
356
A
ALA
4
1
Y
1
A
GLN
357
A
GLN
5
1
Y
1
A
GLN
358
A
GLN
6
1
Y
1
A
ASP
632
A
ASP
280
1
Y
1
A
GLY
633
A
GLY
281
1
Y
1
A
SER
634
A
SER
282
1
Y
1
A
PRO
635
A
PRO
283
1
Y
1
A
ASP
636
A
ASP
284
1
Y
1
A
ALA
637
A
ALA
285
1
Y
1
B
ALA
1761
B
ALA
1
1
Y
1
B
PRO
1762
B
PRO
2
1
Y
1
B
LEU
1763
B
LEU
3
1
Y
1
B
ALA
1764
B
ALA
4
1
Y
1
B
ALA
1765
B
ALA
5
1
Y
1
B
PRO
1766
B
PRO
6
1
Y
1
B
SER
1767
B
SER
7
1
Y
1
B
LYS
1768
B
LYS
8
1
Y
1
B
VAL
1858
B
VAL
98
1
Y
1
A
THR
445
98.22
58.20
1
A
LEU
457
-82.48
46.24
1
A
ASP
473
55.07
-125.54
1
A
SER
547
-166.43
115.46
1
A
ASP
565
-69.77
78.50
1
A
HIS
590
-117.89
-165.25
1
A
ASP
591
63.40
68.03
1
B
GLN
1777
96.74
48.42
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER.PARAM
WATER.TOP
ION.PARAM
ION.TOP
CIS_PEPTIDE.PARAM
0.247
0.217
0.217
2.00
20.00
2898
29096
10.0
99.8
RANDOM
10000
1
INDIVIDUAL RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1H4U
2.00
20.00
174
2993
16
0
2803
0.006
1.288
1.358
1.5
2.072
2.0
2.194
2.0
3.193
2.5
0.234
0.228
2.01
59
511
50
10.0
18.3
2.000
20.000
1GL4
29096
0.000
0.08900
1
11.4000
3.700
99.8
0.25600
2.00
2.11
4.700
1
3.70
99.8
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
CCP4
phasing
AMoRE
Nidogen-1 G2/Perlecan IG3 Complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
THR
359
A
THR
7
HELX_P
A
ARG
364
A
ARG
12
1
1
6
A
HIS
365
A
HIS
13
HELX_P
A
CYS
367
A
CYS
15
5
2
3
A
PRO
447
A
PRO
95
HELX_P
A
TYR
452
A
TYR
100
1
3
6
A
SER
453
A
SER
101
HELX_P
A
LEU
455
A
LEU
103
5
4
3
A
ALA
458
A
ALA
106
HELX_P
A
PHE
468
A
PHE
116
1
5
11
A
ASN
477
A
ASN
125
HELX_P
A
GLY
483
A
GLY
131
1
6
7
B
GLN
1830
B
GLN
70
HELX_P
B
ALA
1834
B
ALA
74
5
7
5
disulf
2.037
A
CYS
360
A
SG
CYS
8
1_555
A
CYS
373
A
SG
CYS
21
1_555
disulf
2.029
A
CYS
367
A
SG
CYS
15
1_555
A
CYS
382
A
SG
CYS
30
1_555
disulf
2.027
A
CYS
381
A
SG
CYS
29
1_555
A
CYS
588
A
SG
CYS
236
1_555
disulf
2.035
A
CYS
384
A
SG
CYS
32
1_555
A
CYS
395
A
SG
CYS
43
1_555
disulf
2.026
B
CYS
1792
B
SG
CYS
32
1_555
B
CYS
1839
B
SG
CYS
79
1_555
metalc
2.100
A
ASP
511
A
OD2
ASP
159
1_555
A
ZN
1632
C
ZN
ZN
1_555
metalc
2.146
A
HIS
513
A
ND1
HIS
161
1_555
A
ZN
1632
C
ZN
ZN
1_555
metalc
2.659
A
HIS
515
A
ND1
HIS
163
1_555
A
ZN
1632
C
ZN
ZN
1_555
metalc
2.167
A
ZN
1632
C
ZN
ZN
1_555
B
HIS
1809
B
NE2
HIS
49
4_556
BASEMENT MEMBRANE
BASEMENT MEMBRANE, IMMUNOGLOBULIN-LIKE DOMAIN, EXTRACELLULAR MATRIX, PROTEOGLYCAN, HEPARAN SULFATE
1GL4
PDB
1
1GL4
NIDO_MOUSE
UNP
1
P10493
1GL4
PDB
2
1GL4
PGBM_MOUSE
UNP
2
Q05793
353
356
1GL4
353
356
1GL4
A
1
1
4
385
665
1GL4
357
637
P10493
A
2
5
285
1761
1764
1GL4
1761
1764
1GL4
B
3
1
4
1765
1858
1GL4
1765
1858
Q05793
B
4
5
98
2
2
5
5
4
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ALA
371
A
ALA
19
A
ASP
375
A
ASP
23
A
PHE
380
A
PHE
28
A
CYS
384
A
CYS
32
A
TYR
388
A
TYR
36
A
GLY
390
A
GLY
38
A
CYS
395
A
CYS
43
A
ALA
397
A
ALA
45
A
VAL
470
A
VAL
118
A
GLU
471
A
GLU
119
A
ILE
618
A
ILE
266
A
GLY
628
A
GLY
276
A
ARG
438
A
ARG
86
A
SER
444
A
SER
92
A
VAL
421
A
VAL
69
A
VAL
433
A
VAL
81
A
PRO
401
A
PRO
49
A
VAL
414
A
VAL
62
A
VAL
470
A
VAL
118
A
GLU
471
A
GLU
119
A
ILE
618
A
ILE
266
A
GLY
628
A
GLY
276
A
THR
600
A
THR
248
A
ASN
613
A
ASN
261
A
TYR
540
A
TYR
188
A
SER
547
A
SER
195
A
VAL
550
A
VAL
198
A
MET
562
A
MET
210
B
ILE
1770
B
ILE
10
B
VAL
1774
B
VAL
14
B
VAL
1788
B
VAL
28
B
SER
1796
B
SER
36
B
ILE
1823
B
ILE
63
B
ILE
1826
B
ILE
66
B
ALA
1817
B
ALA
57
B
PHE
1820
B
PHE
60
B
SER
1779
B
SER
19
B
VAL
1782
B
VAL
22
B
MET
1847
B
MET
87
B
VAL
1856
B
VAL
96
B
GLY
1835
B
GLY
75
B
SER
1842
B
SER
82
B
THR
1802
B
THR
42
B
ARG
1807
B
ARG
47
BINDING SITE FOR RESIDUE ZN A1632
Software
4
BINDING SITE FOR RESIDUE EPE B2858
Software
5
A
ASP
511
A
ASP
159
4
1_555
A
HIS
513
A
HIS
161
4
1_555
A
HIS
515
A
HIS
163
4
1_555
B
HIS
1809
B
HIS
49
4
1_555
B
LEU
1808
B
LEU
48
5
1_555
B
HIS
1809
B
HIS
49
5
1_555
B
GLN
1849
B
GLN
89
5
1_555
B
THR
1851
B
THR
91
5
1_555
B
HOH
2023
F
HOH
5
1_555
19
P 21 21 21