1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Walma, T. Tessari, M. Aelen, J. Schepens, J. Hendriks, W. Vuister, G.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J. Mol. Biol. JMOBAK 0070 0022-2836 316 1101 1110 10.1006/jmbi.2002.5402 11884147 Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9767.062 PROTEIN TYROSINE PHOSPHATASE 3.1.3.48 PDZ2 1 man polymer NONRECEPTOR-TYPE, 13, PROTEIN-TYROSINE PHOSPHATASE RIP, PHOSPHOPROTEIN PHOSPHATASE, PROTEIN-TYROSINE-PHOSPHATASE, PHOSPHOTYROSINE PHOSPHATASE, PTPASE, PTP36, BAS-LIKE no no KPGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT GQVVHLLLEKGQVP KPGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT GQVVHLLLEKGQVP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n MOUSE sample 10090 MUS MUSCULUS 469008 Escherichia coli BL21(DE3) PET28A citation citation_author entity_src_gen repository Initial release Version format compliance Version format compliance Database references Source and taxonomy 1 0 2002-03-08 1 1 2011-05-08 1 2 2011-07-13 1 3 2018-03-28 _citation.journal_abbrev _citation.page_last _citation.pdbx_database_id_DOI _citation.title _citation_author.name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2001-09-06 REL THE ENSEMBLE WAS DETERMINED USING 3D TRIPLE RESONANCE NMR SPECTROSCOPY USING SINGLE AND DOUBLE-LABELED PDZ2. LOWEST ENERGY 200 35 15N NOESY-HSQC 13C NOESYHSQC 13C NOESY-TROSY HNHA HCACO[N] 100 6.3 pH 1 atm 298 K RESTRAINED MOLECULAR DYNAMICS WAS USED IN THE REFINEMENT PROTOCOL. SIMULATED ANNEALING, RESTRAINED MOLECULAR DYNAMICS 9 BRUNGER refinement X-PLOR structure solution XPLOR 750 Varian INOVA LYS 9 n 1 LYS 9 A PRO 10 n 2 PRO 10 A GLY 11 n 3 GLY 11 A ASP 12 n 4 ASP 12 A THR 13 n 5 THR 13 A PHE 14 n 6 PHE 14 A GLU 15 n 7 GLU 15 A VAL 16 n 8 VAL 16 A GLU 17 n 9 GLU 17 A LEU 18 n 10 LEU 18 A ALA 19 n 11 ALA 19 A LYS 20 n 12 LYS 20 A THR 21 n 13 THR 21 A ASP 22 n 14 ASP 22 A GLY 23 n 15 GLY 23 A SER 24 n 16 SER 24 A LEU 25 n 17 LEU 25 A GLY 26 n 18 GLY 26 A ILE 27 n 19 ILE 27 A SER 28 n 20 SER 28 A VAL 29 n 21 VAL 29 A THR 30 n 22 THR 30 A GLY 31 n 23 GLY 31 A GLY 32 n 24 GLY 32 A VAL 33 n 25 VAL 33 A ASN 34 n 26 ASN 34 A THR 35 n 27 THR 35 A SER 36 n 28 SER 36 A VAL 37 n 29 VAL 37 A ARG 38 n 30 ARG 38 A HIS 39 n 31 HIS 39 A GLY 40 n 32 GLY 40 A GLY 41 n 33 GLY 41 A ILE 42 n 34 ILE 42 A TYR 43 n 35 TYR 43 A VAL 44 n 36 VAL 44 A LYS 45 n 37 LYS 45 A ALA 46 n 38 ALA 46 A ILE 47 n 39 ILE 47 A ILE 48 n 40 ILE 48 A PRO 49 n 41 PRO 49 A LYS 50 n 42 LYS 50 A GLY 51 n 43 GLY 51 A ALA 52 n 44 ALA 52 A ALA 53 n 45 ALA 53 A GLU 54 n 46 GLU 54 A SER 55 n 47 SER 55 A ASP 56 n 48 ASP 56 A GLY 57 n 49 GLY 57 A ARG 58 n 50 ARG 58 A ILE 59 n 51 ILE 59 A HIS 60 n 52 HIS 60 A LYS 61 n 53 LYS 61 A GLY 62 n 54 GLY 62 A ASP 63 n 55 ASP 63 A ARG 64 n 56 ARG 64 A VAL 65 n 57 VAL 65 A LEU 66 n 58 LEU 66 A ALA 67 n 59 ALA 67 A VAL 68 n 60 VAL 68 A ASN 69 n 61 ASN 69 A GLY 70 n 62 GLY 70 A VAL 71 n 63 VAL 71 A SER 72 n 64 SER 72 A LEU 73 n 65 LEU 73 A GLU 74 n 66 GLU 74 A GLY 75 n 67 GLY 75 A ALA 76 n 68 ALA 76 A THR 77 n 69 THR 77 A HIS 78 n 70 HIS 78 A LYS 79 n 71 LYS 79 A GLN 80 n 72 GLN 80 A ALA 81 n 73 ALA 81 A VAL 82 n 74 VAL 82 A GLU 83 n 75 GLU 83 A THR 84 n 76 THR 84 A LEU 85 n 77 LEU 85 A ARG 86 n 78 ARG 86 A ASN 87 n 79 ASN 87 A THR 88 n 80 THR 88 A GLY 89 n 81 GLY 89 A GLN 90 n 82 GLN 90 A VAL 91 n 83 VAL 91 A VAL 92 n 84 VAL 92 A HIS 93 n 85 HIS 93 A LEU 94 n 86 LEU 94 A LEU 95 n 87 LEU 95 A LEU 96 n 88 LEU 96 A GLU 97 n 89 GLU 97 A LYS 98 n 90 LYS 98 A GLY 99 n 91 GLY 99 A GLN 100 n 92 GLN 100 A VAL 101 n 93 VAL 101 A PRO 102 n 94 PRO 102 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 18 A N LEU 10 A O VAL 92 A O VAL 84 A N GLU 97 A N GLU 89 A O ARG 64 A O ARG 56 A N VAL 65 A N VAL 57 A O ILE 42 A O ILE 34 A N LYS 45 A N LYS 37 A O SER 28 A O SER 20 A N LEU 18 A N LEU 10 A O VAL 92 A O VAL 84 A N GLU 97 A N GLU 89 A O ARG 64 A O ARG 56 A N VAL 68 A N VAL 60 A O VAL 71 A O VAL 63 5 A A ILE SER 27 28 149.48 8 A A GLY ARG 57 58 146.57 25 A A GLY ARG 57 58 147.84 4 A ARG 86 0.115 SIDE CHAIN 5 A PHE 14 0.091 SIDE CHAIN 11 A ARG 58 0.113 SIDE CHAIN 13 A ARG 64 0.110 SIDE CHAIN 14 A ARG 38 0.088 SIDE CHAIN 15 A ARG 38 0.089 SIDE CHAIN 15 A ARG 58 0.087 SIDE CHAIN 18 A ARG 58 0.114 SIDE CHAIN 19 A ARG 38 0.078 SIDE CHAIN 20 A ARG 38 0.081 SIDE CHAIN 20 A ARG 86 0.080 SIDE CHAIN 21 A ARG 58 0.133 SIDE CHAIN 22 A ARG 86 0.084 SIDE CHAIN 23 A ARG 38 0.081 SIDE CHAIN 24 A ARG 58 0.108 SIDE CHAIN 27 A ARG 38 0.080 SIDE CHAIN 28 A ARG 58 0.083 SIDE CHAIN 28 A ARG 64 0.092 SIDE CHAIN 29 A ARG 64 0.123 SIDE CHAIN 30 A ARG 58 0.096 SIDE CHAIN 30 A ARG 64 0.089 SIDE CHAIN 33 A ARG 58 0.109 SIDE CHAIN 34 A ARG 38 0.075 SIDE CHAIN 34 A ARG 58 0.106 SIDE CHAIN 35 A ARG 58 0.094 SIDE CHAIN 1 3.88 0.50 120.30 124.18 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 2 4.09 0.50 120.30 124.39 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 4 3.14 0.50 120.30 123.44 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 4 -3.72 0.50 120.30 116.58 A A A NE CZ NH2 ARG ARG ARG 38 38 38 N 4 3.23 0.50 120.30 123.53 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 5 3.06 0.50 120.30 123.36 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 5 3.57 0.50 120.30 123.87 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 5 -3.12 0.50 120.30 117.18 A A A NE CZ NH2 ARG ARG ARG 58 58 58 N 6 3.03 0.50 120.30 123.33 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 6 3.09 0.50 120.30 123.39 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 6 3.04 0.50 120.30 123.34 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 6 3.30 0.50 120.30 123.60 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 7 3.92 0.50 120.30 124.22 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 8 -5.16 0.70 120.80 115.64 A A A CB CG CD2 PHE PHE PHE 14 14 14 N 8 4.73 0.70 120.80 125.53 A A A CB CG CD1 PHE PHE PHE 14 14 14 N 9 3.26 0.50 120.30 123.56 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 9 3.17 0.50 120.30 123.47 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 9 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 10 4.02 0.50 120.30 124.32 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 10 3.12 0.50 120.30 123.42 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 10 3.10 0.50 120.30 123.40 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 11 3.34 0.50 120.30 123.64 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 12 3.16 0.50 120.30 123.46 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 12 3.08 0.50 120.30 123.38 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 13 3.29 0.50 120.30 123.59 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 14 3.01 0.50 120.30 123.31 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 16 3.04 0.50 120.30 123.34 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 16 3.64 0.50 120.30 123.94 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 17 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 18 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 19 -5.96 0.70 120.80 114.84 A A A CB CG CD2 PHE PHE PHE 14 14 14 N 19 5.49 0.70 120.80 126.29 A A A CB CG CD1 PHE PHE PHE 14 14 14 N 23 4.07 0.50 120.30 124.37 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 23 -3.15 0.50 120.30 117.15 A A A NE CZ NH2 ARG ARG ARG 58 58 58 N 23 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 24 4.23 0.50 120.30 124.53 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 24 -4.00 0.50 120.30 116.31 A A A NE CZ NH2 ARG ARG ARG 38 38 38 N 24 3.27 0.50 120.30 123.57 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 25 3.32 0.50 120.30 123.62 A A A NE CZ NH1 ARG ARG ARG 38 38 38 N 25 -3.02 0.50 120.30 117.28 A A A NE CZ NH2 ARG ARG ARG 58 58 58 N 26 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 26 3.28 0.50 120.30 123.58 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 27 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 32 3.18 0.50 120.30 123.48 A A A NE CZ NH1 ARG ARG ARG 58 58 58 N 33 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 64 64 64 N 33 3.03 0.50 120.30 123.33 A A A NE CZ NH1 ARG ARG ARG 86 86 86 N 1 A ASP 22 29.64 63.29 1 A THR 35 -94.76 -139.97 1 A LYS 50 82.47 21.33 1 A ASN 87 -88.97 43.16 1 A GLN 100 -97.01 -62.01 2 A ASN 87 -88.51 48.58 3 A GLU 17 -102.55 78.06 3 A LEU 25 -100.71 -61.59 3 A ARG 38 78.71 120.62 3 A HIS 39 72.47 -69.77 3 A LYS 50 81.74 26.53 3 A ASN 87 -78.02 48.81 4 A ASN 34 -97.88 -64.29 4 A ARG 38 38.75 67.24 4 A HIS 39 69.27 -3.21 4 A ASN 87 -81.04 43.06 5 A PRO 10 -76.20 23.22 5 A ASP 22 33.34 52.12 5 A LEU 25 -101.28 -60.24 5 A SER 36 -83.28 46.09 5 A HIS 39 56.69 19.21 5 A LYS 50 82.29 20.35 5 A ASN 87 -91.60 39.71 6 A SER 36 -84.12 36.38 6 A ASN 87 -86.52 46.22 7 A PRO 10 -62.34 63.84 7 A THR 35 -87.57 -135.62 7 A LYS 50 83.01 16.34 7 A ASP 56 -58.91 -70.28 7 A LEU 73 -87.15 32.62 7 A ASN 87 -94.83 49.82 8 A PRO 10 -69.82 -177.26 8 A LEU 25 -106.65 -61.37 8 A VAL 37 -100.34 -128.83 8 A HIS 39 151.34 65.43 8 A LYS 50 82.50 20.16 8 A LEU 73 -92.27 39.32 8 A ASN 87 -94.39 53.48 9 A THR 21 -97.03 -149.81 9 A HIS 39 -123.98 -68.99 9 A LYS 50 82.07 21.76 9 A LEU 73 -99.45 35.96 10 A LEU 25 -102.84 -63.15 10 A THR 35 -116.35 -155.94 10 A ASN 87 -95.65 36.63 11 A LEU 25 -99.96 -60.58 11 A ARG 38 82.44 98.02 11 A HIS 39 66.55 -73.43 11 A LEU 73 -85.48 44.20 12 A ARG 38 -53.64 104.74 12 A HIS 39 58.78 13.87 12 A LEU 73 -92.41 35.47 12 A ASN 87 -94.54 55.91 13 A SER 36 -76.53 34.67 13 A ASN 87 -93.25 41.91 14 A THR 35 -107.50 -145.18 14 A LYS 50 76.16 30.00 14 A LEU 73 -85.97 45.95 15 A ARG 38 93.03 123.00 15 A GLU 54 -41.78 -71.04 15 A GLU 74 -68.71 95.26 15 A ASN 87 -78.58 44.73 16 A SER 36 -81.86 46.81 16 A LYS 50 75.59 31.76 16 A LEU 66 -100.83 -60.66 16 A LEU 73 -84.95 37.74 17 A SER 36 -74.48 47.74 17 A LYS 50 83.53 0.77 17 A ASP 56 -61.56 -71.94 17 A ASN 87 -88.68 48.93 18 A VAL 37 -100.02 41.79 18 A HIS 39 75.01 157.57 18 A GLN 100 -80.71 -155.71 19 A PRO 10 -78.38 -161.59 19 A LEU 25 -102.06 -60.64 19 A HIS 39 -150.61 -52.35 19 A LYS 50 74.88 30.74 20 A VAL 37 -92.25 47.48 20 A ARG 38 36.61 41.91 20 A HIS 39 151.40 -67.35 20 A ASN 87 -86.06 45.68 20 A GLN 90 -70.84 -70.25 21 A LEU 25 -90.61 -61.84 21 A SER 36 -81.22 32.33 21 A ARG 38 47.90 70.21 21 A HIS 39 69.33 -66.37 21 A LYS 50 83.94 7.00 21 A GLU 74 -8.85 93.53 21 A ASN 87 -84.81 45.96 22 A LEU 25 -96.11 -60.56 22 A ARG 38 72.41 117.28 22 A HIS 39 68.75 -61.29 22 A LEU 73 -87.57 42.90 22 A ASN 87 -93.18 32.94 23 A THR 21 -102.48 75.57 23 A ASP 22 61.26 61.53 23 A VAL 33 -77.43 25.27 23 A SER 36 -92.47 50.78 23 A HIS 39 72.16 -9.53 24 A PRO 10 -66.14 -174.22 24 A SER 36 -82.27 49.63 24 A ARG 38 87.59 73.46 24 A HIS 39 90.22 -62.62 25 A GLU 17 -107.39 75.16 25 A LEU 25 -99.78 -62.28 25 A HIS 39 51.96 104.94 25 A LEU 73 -87.34 36.34 25 A GLN 100 -61.25 -165.32 26 A LEU 25 -94.54 -60.55 26 A THR 35 -86.34 -157.45 26 A LYS 50 76.73 31.36 27 A VAL 33 -80.42 49.04 27 A ASN 34 -98.45 -70.89 27 A ARG 38 39.78 79.15 27 A HIS 39 72.16 -45.11 28 A SER 36 -79.11 39.68 28 A LEU 73 -87.97 46.94 28 A ASN 87 -84.34 48.40 29 A ASP 22 33.04 60.29 29 A LEU 25 -92.32 -61.49 29 A VAL 37 -100.40 51.92 29 A ARG 38 73.25 -43.52 29 A HIS 39 -144.60 -60.93 29 A LYS 50 79.06 32.27 29 A ASN 69 77.18 -30.46 29 A LEU 73 -93.88 43.02 29 A ASN 87 -85.39 44.58 30 A LYS 50 70.15 37.47 30 A ASN 87 -92.68 43.37 30 A GLN 100 -94.72 -68.37 31 A ASN 87 -85.93 48.49 32 A ASP 12 -99.86 -63.91 32 A LEU 25 -93.91 -60.40 32 A THR 35 -84.97 -119.51 32 A LYS 50 80.89 18.82 32 A LEU 73 -85.44 41.68 33 A HIS 39 70.18 -58.15 33 A LYS 50 71.07 41.81 33 A ASN 87 -82.86 45.71 34 A THR 35 -81.27 -136.12 34 A GLN 100 -79.51 -82.62 35 A LEU 25 -97.16 -62.67 35 A ARG 38 84.21 119.28 35 A HIS 39 68.59 -61.40 PROTEIN TYROSINE PHOSPHATASE (E.C.3.1.3.48) Second PDZ Domain (PDZ2) of PTP-BL 1 N N A ALA 52 A ALA 44 HELX_P A ASP 56 A ASP 48 1 1 5 A HIS 78 A HIS 70 HELX_P A ARG 86 A ARG 78 1 2 9 HYDROLASE PDZ, PTP-BL, FAS INTERACTION, LIM INTERACTION, STRUCTURAL PROTEIN, CYTOSKELETON, HYDROLASE Q64512 UNP 1 Q64512 1351 1444 1GM1 9 102 Q64512 A 1 1 94 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 12 A ASP 4 A ALA 19 A ALA 11 A VAL 91 A VAL 83 A LYS 98 A LYS 90 A ARG 64 A ARG 56 A VAL 68 A VAL 60 A ILE 42 A ILE 34 A ILE 47 A ILE 39 A ILE 27 A ILE 19 A GLY 31 A GLY 23 A ASP 12 A ASP 4 A ALA 19 A ALA 11 A VAL 91 A VAL 83 A LYS 98 A LYS 90 A ARG 64 A ARG 56 A VAL 68 A VAL 60 A VAL 71 A VAL 63 A SER 72 A SER 64 1 P 1