0.011553
0.000000
0.000000
0.000000
0.011553
0.000000
0.000000
0.000000
0.008492
0.00000
0.00000
0.00000
Lietha, D.
Chirgadze, D.Y.
Mulloy, B.
Blundell, T.L.
Gherardi, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
86.560
86.560
117.750
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H10 O10 S
274.203
n
2-O-sulfo-alpha-L-idopyranuronic acid
O2-SULFO-GLUCURONIC ACID; 2-O-sulfo-alpha-L-iduronic acid; 2-O-sulfo-L-iduronic acid; 2-O-sulfo-iduronic acid
L-saccharide, alpha linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C6 H13 N O11 S2
339.298
n
2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
N,O6-DISULFO-GLUCOSAMINE; 6-O-sulfo-N-sulfo-alpha-D-glucosamine; 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose
D-saccharide, alpha linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
R
C
N
195
R
C
N
196
S
C
N
197
S
C
N
198
R
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
S
N
208
N
O
N
209
N
O
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
S
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
S
C
N
365
R
C
N
366
R
C
N
367
S
C
N
368
R
C
N
369
N
C
N
370
N
N
N
371
N
O
N
372
N
O
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
S
N
377
N
O
N
378
N
O
N
379
N
O
N
380
N
S
N
381
N
O
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
N
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
20
5543
10.1093/EMBOJ/20.20.5543
11597998
Crystal Structures of Nk1-Heparin Complexes Reveal the Basis for Nk1 Activity and Enable Engineering of Potent Agonists of the met Receptor
2001
10.2210/pdb1gmn/pdb
pdb_00001gmn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-04-14
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX14.1
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX14.1
NK1 DIMER IN COMPLEX WITH HEPARIN MOLECULE
21173.260
HEPATOCYTE GROWTH FACTOR
NK1
YES
2
man
polymer
1429.144
2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid
1
man
branched
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
syn
non-polymer
18.015
water
67
nat
water
SCATTER FACTOR, SF, HEPATOPOEITIN A
no
no
YVEGQRKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCADRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSG
VKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGP
WCFTSNPEVRYEVCDIPQCSEVE
YVEGQRKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCADRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSG
VKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGP
WCFTSNPEVRYEVCDIPQCSEVE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
4922
PICHIA PASTORIS
GS115
YEAST
PPIC-9K
1
2.21
44.0
7.50
10% PEG8000, 8% ETHYLENE GLYCOL, 0.55M SODIUM DIHYDROGEN PHOSPHATE 0.10M SODIUM HEPES, PH 7.5
atom_site
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
struct_site
struct_site_gen
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Advisory
Atomic model
Derived calculations
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Advisory
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2001-10-02
1
1
2011-05-08
1
2
2011-07-13
2
0
2017-07-12
3
0
2020-07-29
3
1
2023-12-13
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.type_symbol
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site_gen.symmetry
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_entity_id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
IDS
1208
n
C
IDS
1
A
SGN
1209
n
C
SGN
2
A
IDS
1210
n
C
IDS
3
A
SGN
1211
n
C
SGN
4
A
IDS
1212
n
C
IDS
5
a-L-IdopA2SO3
DGlcpNS[6S]a
N-sulfo-6-sulfo-a-D-glucopyranose
a-D-GlcpNSO36SO3
PDBE
Y
PDBE
2001-09-19
REL
oligosaccharide
WURCS=2.0/2,5,4/[a2121A-1a_1-5_2*OSO/3=O/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O]/1-2-1-2-1/a4-b1_b4-c1_c4-d1_d4-e1
2
PDB2Glycan
1.1.0
WURCS
[][a-L-IdopA2SO3]{[(4+1)][a-D-GlcpNSO36SO3]{[(4+1)][a-L-IdopA2SO3]{[(4+1)][a-D-GlcpNSO36SO3]{[(4+1)][a-L-4-deoxy-IdopA2SO3]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
SGN
IDS
2
1
2
O1
HO4
sing
C1
O4
IDS
SGN
3
2
2
O1
HO4
sing
C1
O4
SGN
IDS
4
3
2
O1
HO4
sing
C1
O4
IDS
SGN
5
4
2
O1
HO4
sing
n
n
n
n
n
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
CHAIN A ENGINEERED MUTATION: VAL(29)ALA, ASP(72)ASN
CHAIN B ENGINEERED MUTATION: VAL(29)ALA, ASP(72)ASN
FUNCTION:HEPATOCYTE GROWTH FACTOR IS A POTENT MITOGEN FOR
MATURE HEPATOCYTES AND ACTS AS A GROWTH FACTOR FOR A RANGE
OF TISSUE AND CELL TYPES.
1NK1
PDB ENTRIES 1NK1 AND 1BHT
PDB
experimental model
1BHT
PDB ENTRIES 1NK1 AND 1BHT
PDB
experimental model
EPE
1213
3
EPE
EPE
306
A
EPE
1210
3
EPE
EPE
301
B
HOH
2032
4
HOH
HOH
401
A
HOH
2025
4
HOH
HOH
402
A
HOH
2002
4
HOH
HOH
403
A
HOH
2016
4
HOH
HOH
404
A
HOH
2005
4
HOH
HOH
405
A
HOH
2014
4
HOH
HOH
406
A
HOH
2031
4
HOH
HOH
407
A
HOH
2024
4
HOH
HOH
408
A
HOH
2030
4
HOH
HOH
409
A
HOH
2012
4
HOH
HOH
410
A
HOH
2026
4
HOH
HOH
411
A
HOH
2021
4
HOH
HOH
412
A
HOH
2004
4
HOH
HOH
413
A
HOH
2013
4
HOH
HOH
414
A
HOH
2003
4
HOH
HOH
415
A
HOH
2022
4
HOH
HOH
416
A
HOH
2006
4
HOH
HOH
417
A
HOH
2028
4
HOH
HOH
418
A
HOH
2015
4
HOH
HOH
419
A
HOH
2001
4
HOH
HOH
420
A
HOH
2017
4
HOH
HOH
421
A
HOH
2023
4
HOH
HOH
422
A
HOH
2027
4
HOH
HOH
423
A
HOH
2020
4
HOH
HOH
424
A
HOH
2011
4
HOH
HOH
425
A
HOH
2019
4
HOH
HOH
426
A
HOH
2029
4
HOH
HOH
427
A
HOH
2007
4
HOH
HOH
428
A
HOH
2018
4
HOH
HOH
429
A
HOH
2009
4
HOH
HOH
430
A
HOH
2010
4
HOH
HOH
431
A
HOH
2008
4
HOH
HOH
432
A
HOH
2004
4
HOH
HOH
401
B
HOH
2027
4
HOH
HOH
402
B
HOH
2031
4
HOH
HOH
403
B
HOH
2002
4
HOH
HOH
404
B
HOH
2007
4
HOH
HOH
405
B
HOH
2011
4
HOH
HOH
406
B
HOH
2035
4
HOH
HOH
407
B
HOH
2014
4
HOH
HOH
408
B
HOH
2018
4
HOH
HOH
409
B
HOH
2019
4
HOH
HOH
410
B
HOH
2025
4
HOH
HOH
411
B
HOH
2024
4
HOH
HOH
412
B
HOH
2013
4
HOH
HOH
413
B
HOH
2021
4
HOH
HOH
414
B
HOH
2015
4
HOH
HOH
415
B
HOH
2029
4
HOH
HOH
416
B
HOH
2009
4
HOH
HOH
417
B
HOH
2033
4
HOH
HOH
418
B
HOH
2008
4
HOH
HOH
419
B
HOH
2012
4
HOH
HOH
420
B
HOH
2026
4
HOH
HOH
421
B
HOH
2022
4
HOH
HOH
422
B
HOH
2005
4
HOH
HOH
423
B
HOH
2020
4
HOH
HOH
424
B
HOH
2030
4
HOH
HOH
425
B
HOH
2028
4
HOH
HOH
426
B
HOH
2023
4
HOH
HOH
427
B
HOH
2006
4
HOH
HOH
428
B
HOH
2016
4
HOH
HOH
429
B
HOH
2032
4
HOH
HOH
430
B
HOH
2017
4
HOH
HOH
431
B
HOH
2010
4
HOH
HOH
432
B
HOH
2034
4
HOH
HOH
433
B
HOH
2001
4
HOH
HOH
434
B
HOH
2003
4
HOH
HOH
435
B
n
1
28
A
n
2
29
A
n
3
30
A
n
4
31
A
n
5
32
A
n
6
33
A
n
7
34
A
n
8
35
A
n
9
36
A
n
10
37
A
THR
38
n
11
THR
38
A
ILE
39
n
12
ILE
39
A
HIS
40
n
13
HIS
40
A
GLU
41
n
14
GLU
41
A
PHE
42
n
15
PHE
42
A
LYS
43
n
16
LYS
43
A
LYS
44
n
17
LYS
44
A
SER
45
n
18
SER
45
A
ALA
46
n
19
ALA
46
A
LYS
47
n
20
LYS
47
A
THR
48
n
21
THR
48
A
THR
49
n
22
THR
49
A
LEU
50
n
23
LEU
50
A
ILE
51
n
24
ILE
51
A
LYS
52
n
25
LYS
52
A
ILE
53
n
26
ILE
53
A
ASP
54
n
27
ASP
54
A
PRO
55
n
28
PRO
55
A
ALA
56
n
29
ALA
56
A
LEU
57
n
30
LEU
57
A
LYS
58
n
31
LYS
58
A
ILE
59
n
32
ILE
59
A
LYS
60
n
33
LYS
60
A
THR
61
n
34
THR
61
A
LYS
62
n
35
LYS
62
A
LYS
63
n
36
LYS
63
A
VAL
64
n
37
VAL
64
A
ASN
65
n
38
ASN
65
A
THR
66
n
39
THR
66
A
ALA
67
n
40
ALA
67
A
ASP
68
n
41
ASP
68
A
GLN
69
n
42
GLN
69
A
CYS
70
n
43
CYS
70
A
ALA
71
n
44
ALA
71
A
ASP
72
n
45
ASP
72
A
ARG
73
n
46
ARG
73
A
CYS
74
n
47
CYS
74
A
THR
75
n
48
THR
75
A
ARG
76
n
49
ARG
76
A
ASN
77
n
50
ASN
77
A
LYS
78
n
51
LYS
78
A
GLY
79
n
52
GLY
79
A
LEU
80
n
53
LEU
80
A
PRO
81
n
54
PRO
81
A
PHE
82
n
55
PHE
82
A
THR
83
n
56
THR
83
A
CYS
84
n
57
CYS
84
A
LYS
85
n
58
LYS
85
A
ALA
86
n
59
ALA
86
A
PHE
87
n
60
PHE
87
A
VAL
88
n
61
VAL
88
A
PHE
89
n
62
PHE
89
A
ASP
90
n
63
ASP
90
A
LYS
91
n
64
LYS
91
A
ALA
92
n
65
ALA
92
A
ARG
93
n
66
ARG
93
A
LYS
94
n
67
LYS
94
A
GLN
95
n
68
GLN
95
A
CYS
96
n
69
CYS
96
A
LEU
97
n
70
LEU
97
A
TRP
98
n
71
TRP
98
A
PHE
99
n
72
PHE
99
A
PRO
100
n
73
PRO
100
A
PHE
101
n
74
PHE
101
A
ASN
102
n
75
ASN
102
A
SER
103
n
76
SER
103
A
MET
104
n
77
MET
104
A
SER
105
n
78
SER
105
A
SER
106
n
79
SER
106
A
GLY
107
n
80
GLY
107
A
VAL
108
n
81
VAL
108
A
LYS
109
n
82
LYS
109
A
LYS
110
n
83
LYS
110
A
GLU
111
n
84
GLU
111
A
PHE
112
n
85
PHE
112
A
GLY
113
n
86
GLY
113
A
HIS
114
n
87
HIS
114
A
GLU
115
n
88
GLU
115
A
PHE
116
n
89
PHE
116
A
ASP
117
n
90
ASP
117
A
LEU
118
n
91
LEU
118
A
TYR
119
n
92
TYR
119
A
GLU
120
n
93
GLU
120
A
ASN
121
n
94
ASN
121
A
LYS
122
n
95
LYS
122
A
ASP
123
n
96
ASP
123
A
TYR
124
n
97
TYR
124
A
ILE
125
n
98
ILE
125
A
ARG
126
n
99
ARG
126
A
ASN
127
n
100
ASN
127
A
CYS
128
n
101
CYS
128
A
ILE
129
n
102
ILE
129
A
ILE
130
n
103
ILE
130
A
GLY
131
n
104
GLY
131
A
LYS
132
n
105
LYS
132
A
GLY
133
n
106
GLY
133
A
ARG
134
n
107
ARG
134
A
SER
135
n
108
SER
135
A
TYR
136
n
109
TYR
136
A
LYS
137
n
110
LYS
137
A
GLY
138
n
111
GLY
138
A
THR
139
n
112
THR
139
A
VAL
140
n
113
VAL
140
A
SER
141
n
114
SER
141
A
ILE
142
n
115
ILE
142
A
THR
143
n
116
THR
143
A
LYS
144
n
117
LYS
144
A
SER
145
n
118
SER
145
A
GLY
146
n
119
GLY
146
A
ILE
147
n
120
ILE
147
A
LYS
148
n
121
LYS
148
A
CYS
149
n
122
CYS
149
A
GLN
150
n
123
GLN
150
A
PRO
151
n
124
PRO
151
A
TRP
152
n
125
TRP
152
A
SER
153
n
126
SER
153
A
SER
154
n
127
SER
154
A
MET
155
n
128
MET
155
A
ILE
156
n
129
ILE
156
A
PRO
157
n
130
PRO
157
A
HIS
158
n
131
HIS
158
A
GLU
159
n
132
GLU
159
A
HIS
160
n
133
HIS
160
A
SER
161
n
134
SER
161
A
PHE
162
n
135
PHE
162
A
LEU
163
n
136
LEU
163
A
PRO
164
n
137
PRO
164
A
SER
165
n
138
SER
165
A
SER
166
n
139
SER
166
A
TYR
167
n
140
TYR
167
A
ARG
168
n
141
ARG
168
A
GLY
169
n
142
GLY
169
A
LYS
170
n
143
LYS
170
A
ASP
171
n
144
ASP
171
A
LEU
172
n
145
LEU
172
A
GLN
173
n
146
GLN
173
A
GLU
174
n
147
GLU
174
A
ASN
175
n
148
ASN
175
A
TYR
176
n
149
TYR
176
A
CYS
177
n
150
CYS
177
A
ARG
178
n
151
ARG
178
A
ASN
179
n
152
ASN
179
A
PRO
180
n
153
PRO
180
A
ARG
181
n
154
ARG
181
A
GLY
182
n
155
GLY
182
A
GLU
183
n
156
GLU
183
A
GLU
184
n
157
GLU
184
A
GLY
185
n
158
GLY
185
A
GLY
186
n
159
GLY
186
A
PRO
187
n
160
PRO
187
A
TRP
188
n
161
TRP
188
A
CYS
189
n
162
CYS
189
A
PHE
190
n
163
PHE
190
A
THR
191
n
164
THR
191
A
SER
192
n
165
SER
192
A
ASN
193
n
166
ASN
193
A
PRO
194
n
167
PRO
194
A
GLU
195
n
168
GLU
195
A
VAL
196
n
169
VAL
196
A
ARG
197
n
170
ARG
197
A
TYR
198
n
171
TYR
198
A
GLU
199
n
172
GLU
199
A
VAL
200
n
173
VAL
200
A
CYS
201
n
174
CYS
201
A
ASP
202
n
175
ASP
202
A
ILE
203
n
176
ILE
203
A
PRO
204
n
177
PRO
204
A
GLN
205
n
178
GLN
205
A
CYS
206
n
179
CYS
206
A
SER
207
n
180
SER
207
A
SER
207
n
181
GLU
208
A
n
182
209
A
n
183
210
A
n
1
28
B
n
2
29
B
n
3
30
B
n
4
31
B
n
5
32
B
n
6
33
B
n
7
34
B
n
8
35
B
n
9
36
B
n
10
37
B
n
11
38
B
n
12
39
B
n
13
40
B
n
14
41
B
PHE
42
n
15
PHE
42
B
LYS
43
n
16
LYS
43
B
LYS
44
n
17
LYS
44
B
SER
45
n
18
SER
45
B
ALA
46
n
19
ALA
46
B
LYS
47
n
20
LYS
47
B
THR
48
n
21
THR
48
B
THR
49
n
22
THR
49
B
LEU
50
n
23
LEU
50
B
ILE
51
n
24
ILE
51
B
n
25
52
B
n
26
53
B
n
27
54
B
n
28
55
B
n
29
56
B
n
30
57
B
n
31
58
B
n
32
59
B
n
33
60
B
n
34
61
B
n
35
62
B
n
36
63
B
n
37
64
B
n
38
65
B
n
39
66
B
n
40
67
B
n
41
68
B
n
42
69
B
n
43
70
B
n
44
71
B
n
45
72
B
n
46
73
B
n
47
74
B
n
48
75
B
n
49
76
B
n
50
77
B
n
51
78
B
n
52
79
B
n
53
80
B
n
54
81
B
n
55
82
B
n
56
83
B
CYS
84
n
57
CYS
84
B
LYS
85
n
58
LYS
85
B
ALA
86
n
59
ALA
86
B
PHE
87
n
60
PHE
87
B
n
61
88
B
n
62
89
B
n
63
90
B
n
64
91
B
n
65
92
B
n
66
93
B
n
67
94
B
n
68
95
B
n
69
96
B
n
70
97
B
TRP
98
n
71
TRP
98
B
PHE
99
n
72
PHE
99
B
PRO
100
n
73
PRO
100
B
PHE
101
n
74
PHE
101
B
ASN
102
n
75
ASN
102
B
SER
103
n
76
SER
103
B
MET
104
n
77
MET
104
B
n
78
105
B
n
79
106
B
n
80
107
B
n
81
108
B
n
82
109
B
n
83
110
B
n
84
111
B
n
85
112
B
n
86
113
B
n
87
114
B
n
88
115
B
n
89
116
B
n
90
117
B
LEU
118
n
91
LEU
118
B
TYR
119
n
92
TYR
119
B
GLU
120
n
93
GLU
120
B
ASN
121
n
94
ASN
121
B
LYS
122
n
95
LYS
122
B
ASP
123
n
96
ASP
123
B
TYR
124
n
97
TYR
124
B
ILE
125
n
98
ILE
125
B
ARG
126
n
99
ARG
126
B
ASN
127
n
100
ASN
127
B
CYS
128
n
101
CYS
128
B
ILE
129
n
102
ILE
129
B
ILE
130
n
103
ILE
130
B
GLY
131
n
104
GLY
131
B
LYS
132
n
105
LYS
132
B
GLY
133
n
106
GLY
133
B
ARG
134
n
107
ARG
134
B
SER
135
n
108
SER
135
B
TYR
136
n
109
TYR
136
B
LYS
137
n
110
LYS
137
B
GLY
138
n
111
GLY
138
B
THR
139
n
112
THR
139
B
VAL
140
n
113
VAL
140
B
SER
141
n
114
SER
141
B
ILE
142
n
115
ILE
142
B
THR
143
n
116
THR
143
B
LYS
144
n
117
LYS
144
B
SER
145
n
118
SER
145
B
GLY
146
n
119
GLY
146
B
ILE
147
n
120
ILE
147
B
LYS
148
n
121
LYS
148
B
CYS
149
n
122
CYS
149
B
GLN
150
n
123
GLN
150
B
PRO
151
n
124
PRO
151
B
TRP
152
n
125
TRP
152
B
SER
153
n
126
SER
153
B
SER
154
n
127
SER
154
B
MET
155
n
128
MET
155
B
ILE
156
n
129
ILE
156
B
PRO
157
n
130
PRO
157
B
HIS
158
n
131
HIS
158
B
GLU
159
n
132
GLU
159
B
HIS
160
n
133
HIS
160
B
SER
161
n
134
SER
161
B
PHE
162
n
135
PHE
162
B
LEU
163
n
136
LEU
163
B
PRO
164
n
137
PRO
164
B
SER
165
n
138
SER
165
B
SER
166
n
139
SER
166
B
TYR
167
n
140
TYR
167
B
ARG
168
n
141
ARG
168
B
GLY
169
n
142
GLY
169
B
LYS
170
n
143
LYS
170
B
ASP
171
n
144
ASP
171
B
LEU
172
n
145
LEU
172
B
GLN
173
n
146
GLN
173
B
GLU
174
n
147
GLU
174
B
ASN
175
n
148
ASN
175
B
TYR
176
n
149
TYR
176
B
CYS
177
n
150
CYS
177
B
ARG
178
n
151
ARG
178
B
ASN
179
n
152
ASN
179
B
PRO
180
n
153
PRO
180
B
ARG
181
n
154
ARG
181
B
GLY
182
n
155
GLY
182
B
GLU
183
n
156
GLU
183
B
GLU
184
n
157
GLU
184
B
GLY
185
n
158
GLY
185
B
GLY
186
n
159
GLY
186
B
PRO
187
n
160
PRO
187
B
TRP
188
n
161
TRP
188
B
CYS
189
n
162
CYS
189
B
PHE
190
n
163
PHE
190
B
THR
191
n
164
THR
191
B
SER
192
n
165
SER
192
B
ASN
193
n
166
ASN
193
B
PRO
194
n
167
PRO
194
B
GLU
195
n
168
GLU
195
B
VAL
196
n
169
VAL
196
B
ARG
197
n
170
ARG
197
B
TYR
198
n
171
TYR
198
B
GLU
199
n
172
GLU
199
B
VAL
200
n
173
VAL
200
B
CYS
201
n
174
CYS
201
B
ASP
202
n
175
ASP
202
B
ILE
203
n
176
ILE
203
B
PRO
204
n
177
PRO
204
B
GLN
205
n
178
GLN
205
B
CYS
206
n
179
CYS
206
B
SER
207
n
180
SER
207
B
GLU
208
n
181
GLU
208
B
VAL
209
n
182
VAL
209
B
VAL
209
n
183
GLU
210
B
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
43
A
N
LYS
16
A
O
GLU
120
A
O
GLU
93
A
O
TYR
119
A
O
TYR
92
A
N
PHE
87
A
N
PHE
60
A
N
ALA
86
A
N
ALA
59
A
O
PHE
99
A
O
PHE
72
A
O
TRP
98
A
O
TRP
71
A
N
LYS
60
A
N
LYS
33
A
N
CYS
189
A
N
CYS
162
A
O
GLU
199
A
O
GLU
172
B
N
LYS
43
B
N
LYS
16
B
O
GLU
120
B
O
GLU
93
B
O
TYR
119
B
O
TYR
92
B
N
PHE
87
B
N
PHE
60
B
N
CYS
189
B
N
CYS
162
B
O
GLU
199
B
O
GLU
172
1
A
CG
HIS
40
A
CG
HIS
13
1
Y
1
A
ND1
HIS
40
A
ND1
HIS
13
1
Y
1
A
CD2
HIS
40
A
CD2
HIS
13
1
Y
1
A
CE1
HIS
40
A
CE1
HIS
13
1
Y
1
A
NE2
HIS
40
A
NE2
HIS
13
1
Y
1
A
CG
GLU
41
A
CG
GLU
14
1
Y
1
A
CD
GLU
41
A
CD
GLU
14
1
Y
1
A
OE1
GLU
41
A
OE1
GLU
14
1
Y
1
A
OE2
GLU
41
A
OE2
GLU
14
1
Y
1
A
CG1
ILE
53
A
CG1
ILE
26
1
Y
1
A
CG2
ILE
53
A
CG2
ILE
26
1
Y
1
A
CD1
ILE
53
A
CD1
ILE
26
1
Y
1
A
CG
ASP
68
A
CG
ASP
41
1
Y
1
A
OD1
ASP
68
A
OD1
ASP
41
1
Y
1
A
OD2
ASP
68
A
OD2
ASP
41
1
Y
1
A
CG
ASP
72
A
CG
ASP
45
1
Y
1
A
OD1
ASP
72
A
OD1
ASP
45
1
Y
1
A
OD2
ASP
72
A
OD2
ASP
45
1
Y
1
A
CD
ARG
76
A
CD
ARG
49
1
Y
1
A
NE
ARG
76
A
NE
ARG
49
1
Y
1
A
CZ
ARG
76
A
CZ
ARG
49
1
Y
1
A
NH1
ARG
76
A
NH1
ARG
49
1
Y
1
A
NH2
ARG
76
A
NH2
ARG
49
1
Y
1
A
CG
LYS
78
A
CG
LYS
51
1
Y
1
A
CD
LYS
78
A
CD
LYS
51
1
Y
1
A
CE
LYS
78
A
CE
LYS
51
1
Y
1
A
NZ
LYS
78
A
NZ
LYS
51
1
Y
1
A
SD
MET
104
A
SD
MET
77
1
Y
1
A
CE
MET
104
A
CE
MET
77
1
Y
1
A
CG
LYS
109
A
CG
LYS
82
1
Y
1
A
CD
LYS
109
A
CD
LYS
82
1
Y
1
A
CE
LYS
109
A
CE
LYS
82
1
Y
1
A
NZ
LYS
109
A
NZ
LYS
82
1
Y
1
A
CG
GLU
111
A
CG
GLU
84
1
Y
1
A
CD
GLU
111
A
CD
GLU
84
1
Y
1
A
OE1
GLU
111
A
OE1
GLU
84
1
Y
1
A
OE2
GLU
111
A
OE2
GLU
84
1
Y
1
A
CG
ARG
134
A
CG
ARG
107
1
Y
1
A
CD
ARG
134
A
CD
ARG
107
1
Y
1
A
NE
ARG
134
A
NE
ARG
107
1
Y
1
A
CZ
ARG
134
A
CZ
ARG
107
1
Y
1
A
NH1
ARG
134
A
NH1
ARG
107
1
Y
1
A
NH2
ARG
134
A
NH2
ARG
107
1
Y
1
A
CG1
ILE
156
A
CG1
ILE
129
1
Y
1
A
CG2
ILE
156
A
CG2
ILE
129
1
Y
1
A
CD1
ILE
156
A
CD1
ILE
129
1
Y
1
A
CG
ARG
168
A
CG
ARG
141
1
Y
1
A
CD
ARG
168
A
CD
ARG
141
1
Y
1
A
NE
ARG
168
A
NE
ARG
141
1
Y
1
A
CZ
ARG
168
A
CZ
ARG
141
1
Y
1
A
NH1
ARG
168
A
NH1
ARG
141
1
Y
1
A
NH2
ARG
168
A
NH2
ARG
141
1
Y
1
A
CG
GLU
174
A
CG
GLU
147
1
Y
1
A
CD
GLU
174
A
CD
GLU
147
1
Y
1
A
OE1
GLU
174
A
OE1
GLU
147
1
Y
1
A
OE2
GLU
174
A
OE2
GLU
147
1
Y
1
A
CD
GLU
184
A
CD
GLU
157
1
Y
1
A
OE1
GLU
184
A
OE1
GLU
157
1
Y
1
A
OE2
GLU
184
A
OE2
GLU
157
1
Y
1
A
CG
GLU
195
A
CG
GLU
168
1
Y
1
A
CD
GLU
195
A
CD
GLU
168
1
Y
1
A
OE1
GLU
195
A
OE1
GLU
168
1
Y
1
A
OE2
GLU
195
A
OE2
GLU
168
1
Y
1
A
CG
ASP
202
A
CG
ASP
175
1
Y
1
A
OD1
ASP
202
A
OD1
ASP
175
1
Y
1
A
OD2
ASP
202
A
OD2
ASP
175
1
Y
1
A
CA
GLU
208
A
CA
GLU
181
1
Y
1
A
C
GLU
208
A
C
GLU
181
1
Y
1
A
O
GLU
208
A
O
GLU
181
1
Y
1
A
CB
GLU
208
A
CB
GLU
181
1
Y
1
A
CG
GLU
208
A
CG
GLU
181
1
Y
1
A
CD
GLU
208
A
CD
GLU
181
1
Y
1
A
OE1
GLU
208
A
OE1
GLU
181
1
Y
1
A
OE2
GLU
208
A
OE2
GLU
181
1
Y
1
B
CG
LYS
44
B
CG
LYS
17
1
Y
1
B
CD
LYS
44
B
CD
LYS
17
1
Y
1
B
CE
LYS
44
B
CE
LYS
17
1
Y
1
B
NZ
LYS
44
B
NZ
LYS
17
1
Y
1
B
CG
LYS
47
B
CG
LYS
20
1
Y
1
B
CD
LYS
47
B
CD
LYS
20
1
Y
1
B
CE
LYS
47
B
CE
LYS
20
1
Y
1
B
NZ
LYS
47
B
NZ
LYS
20
1
Y
1
B
CG
LEU
50
B
CG
LEU
23
1
Y
1
B
CD1
LEU
50
B
CD1
LEU
23
1
Y
1
B
CD2
LEU
50
B
CD2
LEU
23
1
Y
1
B
CG1
ILE
51
B
CG1
ILE
24
1
Y
1
B
CG2
ILE
51
B
CG2
ILE
24
1
Y
1
B
CD1
ILE
51
B
CD1
ILE
24
1
Y
1
B
CG
TRP
98
B
CG
TRP
71
1
Y
1
B
CD1
TRP
98
B
CD1
TRP
71
1
Y
1
B
CD2
TRP
98
B
CD2
TRP
71
1
Y
1
B
NE1
TRP
98
B
NE1
TRP
71
1
Y
1
B
CE2
TRP
98
B
CE2
TRP
71
1
Y
1
B
CE3
TRP
98
B
CE3
TRP
71
1
Y
1
B
CZ2
TRP
98
B
CZ2
TRP
71
1
Y
1
B
CZ3
TRP
98
B
CZ3
TRP
71
1
Y
1
B
CH2
TRP
98
B
CH2
TRP
71
1
Y
1
B
CG
MET
104
B
CG
MET
77
1
Y
1
B
SD
MET
104
B
SD
MET
77
1
Y
1
B
CE
MET
104
B
CE
MET
77
1
Y
1
B
CG
ARG
134
B
CG
ARG
107
1
Y
1
B
CD
ARG
134
B
CD
ARG
107
1
Y
1
B
NE
ARG
134
B
NE
ARG
107
1
Y
1
B
CZ
ARG
134
B
CZ
ARG
107
1
Y
1
B
NH1
ARG
134
B
NH1
ARG
107
1
Y
1
B
NH2
ARG
134
B
NH2
ARG
107
1
Y
1
B
CG
ARG
168
B
CG
ARG
141
1
Y
1
B
CD
ARG
168
B
CD
ARG
141
1
Y
1
B
NE
ARG
168
B
NE
ARG
141
1
Y
1
B
CZ
ARG
168
B
CZ
ARG
141
1
Y
1
B
NH1
ARG
168
B
NH1
ARG
141
1
Y
1
B
NH2
ARG
168
B
NH2
ARG
141
1
Y
1
B
CG
GLN
173
B
CG
GLN
146
1
Y
1
B
CD
GLN
173
B
CD
GLN
146
1
Y
1
B
OE1
GLN
173
B
OE1
GLN
146
1
Y
1
B
NE2
GLN
173
B
NE2
GLN
146
1
Y
1
B
CG
GLU
208
B
CG
GLU
181
1
Y
1
B
CD
GLU
208
B
CD
GLU
181
1
Y
1
B
OE1
GLU
208
B
OE1
GLU
181
1
Y
1
B
OE2
GLU
208
B
OE2
GLU
181
1
Y
1
B
CA
GLU
210
B
CA
GLU
183
1
Y
1
B
C
GLU
210
B
C
GLU
183
1
Y
1
B
O
GLU
210
B
O
GLU
183
1
Y
1
B
CB
GLU
210
B
CB
GLU
183
1
Y
1
B
CG
GLU
210
B
CG
GLU
183
1
Y
1
B
CD
GLU
210
B
CD
GLU
183
1
Y
1
B
OE1
GLU
210
B
OE1
GLU
183
1
Y
1
B
OE2
GLU
210
B
OE2
GLU
183
1
Y
1
C
C6
IDS
1
C
C6
IDS
0
N
1
C
O6A
IDS
1
C
O6A
IDS
0
N
1
C
O6B
IDS
1
C
O6B
IDS
0
N
1
C
O4
IDS
5
C
O4
IDS
5
1
N
1
A
TYR
28
A
TYR
1
1
Y
1
A
VAL
29
A
VAL
2
1
Y
1
A
GLU
30
A
GLU
3
1
Y
1
A
GLY
31
A
GLY
4
1
Y
1
A
GLN
32
A
GLN
5
1
Y
1
A
ARG
33
A
ARG
6
1
Y
1
A
LYS
34
A
LYS
7
1
Y
1
A
ARG
35
A
ARG
8
1
Y
1
A
ARG
36
A
ARG
9
1
Y
1
A
ASN
37
A
ASN
10
1
Y
1
A
VAL
209
A
VAL
182
1
Y
1
A
GLU
210
A
GLU
183
1
Y
1
B
TYR
28
B
TYR
1
1
Y
1
B
VAL
29
B
VAL
2
1
Y
1
B
GLU
30
B
GLU
3
1
Y
1
B
GLY
31
B
GLY
4
1
Y
1
B
GLN
32
B
GLN
5
1
Y
1
B
ARG
33
B
ARG
6
1
Y
1
B
LYS
34
B
LYS
7
1
Y
1
B
ARG
35
B
ARG
8
1
Y
1
B
ARG
36
B
ARG
9
1
Y
1
B
ASN
37
B
ASN
10
1
Y
1
B
THR
38
B
THR
11
1
Y
1
B
ILE
39
B
ILE
12
1
Y
1
B
HIS
40
B
HIS
13
1
Y
1
B
GLU
41
B
GLU
14
1
Y
1
B
LYS
52
B
LYS
25
1
Y
1
B
ILE
53
B
ILE
26
1
Y
1
B
ASP
54
B
ASP
27
1
Y
1
B
PRO
55
B
PRO
28
1
Y
1
B
ALA
56
B
ALA
29
1
Y
1
B
LEU
57
B
LEU
30
1
Y
1
B
LYS
58
B
LYS
31
1
Y
1
B
ILE
59
B
ILE
32
1
Y
1
B
LYS
60
B
LYS
33
1
Y
1
B
THR
61
B
THR
34
1
Y
1
B
LYS
62
B
LYS
35
1
Y
1
B
LYS
63
B
LYS
36
1
Y
1
B
VAL
64
B
VAL
37
1
Y
1
B
ASN
65
B
ASN
38
1
Y
1
B
THR
66
B
THR
39
1
Y
1
B
ALA
67
B
ALA
40
1
Y
1
B
ASP
68
B
ASP
41
1
Y
1
B
GLN
69
B
GLN
42
1
Y
1
B
CYS
70
B
CYS
43
1
Y
1
B
ALA
71
B
ALA
44
1
Y
1
B
ASP
72
B
ASP
45
1
Y
1
B
ARG
73
B
ARG
46
1
Y
1
B
CYS
74
B
CYS
47
1
Y
1
B
THR
75
B
THR
48
1
Y
1
B
ARG
76
B
ARG
49
1
Y
1
B
ASN
77
B
ASN
50
1
Y
1
B
LYS
78
B
LYS
51
1
Y
1
B
GLY
79
B
GLY
52
1
Y
1
B
LEU
80
B
LEU
53
1
Y
1
B
PRO
81
B
PRO
54
1
Y
1
B
PHE
82
B
PHE
55
1
Y
1
B
THR
83
B
THR
56
1
Y
1
B
VAL
88
B
VAL
61
1
Y
1
B
PHE
89
B
PHE
62
1
Y
1
B
ASP
90
B
ASP
63
1
Y
1
B
LYS
91
B
LYS
64
1
Y
1
B
ALA
92
B
ALA
65
1
Y
1
B
ARG
93
B
ARG
66
1
Y
1
B
LYS
94
B
LYS
67
1
Y
1
B
GLN
95
B
GLN
68
1
Y
1
B
CYS
96
B
CYS
69
1
Y
1
B
LEU
97
B
LEU
70
1
Y
1
B
SER
105
B
SER
78
1
Y
1
B
SER
106
B
SER
79
1
Y
1
B
GLY
107
B
GLY
80
1
Y
1
B
VAL
108
B
VAL
81
1
Y
1
B
LYS
109
B
LYS
82
1
Y
1
B
LYS
110
B
LYS
83
1
Y
1
B
GLU
111
B
GLU
84
1
Y
1
B
PHE
112
B
PHE
85
1
Y
1
B
GLY
113
B
GLY
86
1
Y
1
B
HIS
114
B
HIS
87
1
Y
1
B
GLU
115
B
GLU
88
1
Y
1
B
PHE
116
B
PHE
89
1
Y
1
B
ASP
117
B
ASP
90
1
Y
1
A
ASP
54
170.21
153.81
1
A
PRO
55
-50.01
-96.77
1
A
ALA
56
-2.86
-111.51
1
A
LYS
62
-172.84
132.04
1
A
PRO
81
-66.24
25.38
1
A
PRO
100
-86.31
30.35
1
A
ARG
126
-38.67
122.05
1
A
SER
141
-142.09
47.67
1
A
GLU
174
47.89
-131.77
1
B
ALA
46
-39.18
136.10
1
B
LYS
47
39.40
84.37
1
B
THR
49
176.04
158.85
1
B
SER
103
-51.50
-0.36
1
B
GLU
174
52.75
-130.15
1
B
VAL
209
-101.44
57.24
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
EPE.PAR
EPE.TOP
HEPARIN.PARAM
HEPARIN.TOP
57.4
-7.98
-7.98
15.97
BULK SOLVENT MODEL USED
0.279
0.009
0.262
0.262
2.30
21.00
951
19580
4.9
95.9
RANDOM
1
RESTRAINED
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRIES 1NK1 AND 1BHT
FLAT MODEL
45.6917
0.328784
0.38
0.35
21.00
0.29
0.26
2.30
21.00
67
2353
116
0
2170
0.007
1.20
24.60
0.77
1.70
1.50
2.94
2.00
2.27
2.00
3.39
2.50
0.359
0.032
0.315
2.44
125
2783
19
4.3
87.2
53.1
2.300
21.000
1GMN
20349
3.000
0.07700
1
10.5000
13.000
99.5
2.30
2.35
0.37500
1
99.0
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
CRYSTAL STRUCTURES OF NK1-HEPARIN COMPLEXES REVEAL THE BASIS FOR NK1 ACTIVITY AND ENABLE ENGINEERING OF POTENT AGONISTS OF THE MET RECEPTOR
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
38
A
THR
11
HELX_P
A
HIS
40
A
HIS
13
5
AA1
3
A
THR
66
A
THR
39
HELX_P
A
ARG
76
A
ARG
49
1
AA2
11
A
ASP
123
A
ASP
96
HELX_P
A
ILE
125
A
ILE
98
5
AA3
3
A
LEU
163
A
LEU
136
HELX_P
A
TYR
167
A
TYR
140
5
AA4
5
B
LYS
122
B
LYS
95
HELX_P
B
ILE
125
B
ILE
98
5
AA5
4
B
LEU
163
B
LEU
136
HELX_P
B
ARG
168
B
ARG
141
5
AA6
6
disulf
2.964
A
CYS
74
A
SG
CYS
47
1_555
A
CYS
84
A
SG
CYS
57
1_555
disulf
2.791
A
CYS
128
A
SG
CYS
101
1_555
A
CYS
206
A
SG
CYS
179
1_555
disulf
2.031
A
CYS
149
A
SG
CYS
122
1_555
A
CYS
189
A
SG
CYS
162
1_555
disulf
2.029
A
CYS
177
A
SG
CYS
150
1_555
A
CYS
201
A
SG
CYS
174
1_555
disulf
2.887
B
CYS
128
B
SG
CYS
101
1_555
B
CYS
206
B
SG
CYS
179
1_555
disulf
2.037
B
CYS
149
B
SG
CYS
122
1_555
B
CYS
189
B
SG
CYS
162
1_555
disulf
2.028
B
CYS
177
B
SG
CYS
150
1_555
B
CYS
201
B
SG
CYS
174
1_555
covale
1.402
both
C
IDS
1
C
O4
IDS
1_555
C
SGN
2
C
C1
SGN
1_555
covale
1.396
both
C
SGN
2
C
O4
SGN
1_555
C
IDS
3
C
C1
IDS
1_555
covale
1.411
both
C
IDS
3
C
O4
IDS
1_555
C
SGN
4
C
C1
SGN
1_555
covale
1.406
both
C
SGN
4
C
O4
SGN
1_555
C
IDS
5
C
C1
IDS
1_555
HORMONE/GROWTH FACTOR
HGF/SF, HORMONE/GROWTH FACTOR, HORMONE-GROWTH FACTOR complex
A
ILE
156
A
ILE
129
1
A
PRO
157
A
PRO
130
-0.06
B
ILE
156
B
ILE
129
1
B
PRO
157
B
PRO
130
0.06
HGF_HUMAN
UNP
1
P14210
28
210
1GMN
28
210
P14210
A
1
1
183
28
210
1GMN
28
210
P14210
B
1
1
183
1
ALA
engineered mutation
VAL
29
1GMN
A
P14210
UNP
29
2
1
ASN
engineered mutation
ASP
72
1GMN
A
P14210
UNP
72
45
2
ALA
engineered mutation
VAL
29
1GMN
B
P14210
UNP
29
2
2
ASN
engineered mutation
ASP
72
1GMN
B
P14210
UNP
72
45
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
42
A
PHE
15
A
ILE
51
A
ILE
24
A
LYS
109
A
LYS
82
A
ASN
121
A
ASN
94
A
ALA
86
A
ALA
59
A
ASP
90
A
ASP
63
A
GLN
95
A
GLN
68
A
PHE
99
A
PHE
72
A
LYS
60
A
LYS
33
A
LYS
63
A
LYS
36
A
TRP
188
A
TRP
161
A
PHE
190
A
PHE
163
A
TYR
198
A
TYR
171
A
VAL
200
A
VAL
173
B
LYS
43
B
LYS
16
B
LYS
44
B
LYS
17
B
TYR
119
B
TYR
92
B
GLU
120
B
GLU
93
B
ALA
86
B
ALA
59
B
PHE
87
B
PHE
60
B
TRP
188
B
TRP
161
B
PHE
190
B
PHE
163
B
TYR
198
B
TYR
171
B
VAL
200
B
VAL
173
96
P 43 21 2