0.016388 0.000000 0.010954 0.000000 0.009907 0.000000 0.000000 0.000000 0.024886 0.00000 0.00000 0.00000 Rigden, D.J. Lee, W.H. Polikarpov, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 123.76 90.00 61.019 100.937 48.333 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H8 O 60.095 ISOPROPYL ALCOHOL 2-PROPANOL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C4 H9 N O2 103.120 UNKNOWN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N C N 184 N C N 185 N C N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N C N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N C N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N C N 248 N S N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N O N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 R C N 321 N O N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N N Y 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C N 389 N C N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing Y 259 N doub Y 260 N sing Y 261 N sing N 262 N sing Y 263 N doub N 264 N sing Y 265 N doub N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N doub N 361 N sing Y 362 N doub N 363 N sing Y 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 59 255 10.1107/S0907444902021467 12554936 The Structure of the D49 Phospholipase A2 Piratoxin III from Bothrops Pirajai Reveals Unprecedented Structural Displacement of the Calcium-Binding Loop: Possible Relationship to Cooperative Substrate Binding 2003 10.2210/pdb1gmz/pdb pdb_00001gmz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290.0 1 IMAGE PLATE 2000-09-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.535 1.0 D03B-MX1 LNLS 1.535 SYNCHROTRON LNLS BEAMLINE D03B-MX1 13856.016 PHOSPHOLIPASE A2 3.1.1.4 2 nat polymer 60.095 ISOPROPYL ALCOHOL 2 syn non-polymer 18.015 water 135 nat water no no DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKLTSCKPKTDRYSYSRKDGTIVCGENDP CRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKK(UNK)ADDC DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKLTSCKPKTDRYSYSRKDGTIVCGENDP CRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKKXADDC A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n SNAKE sample 113192 BOTHROPS PIRAJAI VENOM 1 2.32 45 5.30 18% 2-PROPANOL, 21% PEG 4000 AND 0.1 M NA CITRATE PH 5.3 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description 1 0 2001-11-01 1 1 2011-05-08 1 2 2011-07-13 1 3 2023-12-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y PDBE 2001-09-27 REL REL 1 A O HOH 2005 5.99 IPA ISOPROPYL ALCOHOL HOH water NOT YET DEPOSITED IN SEQUENCE DATABASES RESIDUE UNK(117) IS UNKNOWN IN CHAINS A,B 1CL5 PDB ENTRY 1CL5 PDB experimental model IPA 200 2 IPA IPA 200 A IPA 200 2 IPA IPA 200 B HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2001 3 HOH HOH 2001 B HOH 2002 3 HOH HOH 2002 B HOH 2003 3 HOH HOH 2003 B HOH 2004 3 HOH HOH 2004 B HOH 2005 3 HOH HOH 2005 B HOH 2006 3 HOH HOH 2006 B HOH 2007 3 HOH HOH 2007 B HOH 2008 3 HOH HOH 2008 B HOH 2009 3 HOH HOH 2009 B HOH 2010 3 HOH HOH 2010 B HOH 2011 3 HOH HOH 2011 B HOH 2012 3 HOH HOH 2012 B HOH 2013 3 HOH HOH 2013 B HOH 2014 3 HOH HOH 2014 B HOH 2015 3 HOH HOH 2015 B HOH 2016 3 HOH HOH 2016 B HOH 2017 3 HOH HOH 2017 B HOH 2018 3 HOH HOH 2018 B HOH 2019 3 HOH HOH 2019 B HOH 2020 3 HOH HOH 2020 B HOH 2021 3 HOH HOH 2021 B HOH 2022 3 HOH HOH 2022 B HOH 2023 3 HOH HOH 2023 B HOH 2024 3 HOH HOH 2024 B HOH 2025 3 HOH HOH 2025 B HOH 2026 3 HOH HOH 2026 B HOH 2027 3 HOH HOH 2027 B HOH 2028 3 HOH HOH 2028 B HOH 2029 3 HOH HOH 2029 B HOH 2030 3 HOH HOH 2030 B HOH 2031 3 HOH HOH 2031 B HOH 2032 3 HOH HOH 2032 B HOH 2033 3 HOH HOH 2033 B HOH 2034 3 HOH HOH 2034 B HOH 2035 3 HOH HOH 2035 B HOH 2036 3 HOH HOH 2036 B HOH 2037 3 HOH HOH 2037 B HOH 2038 3 HOH HOH 2038 B HOH 2039 3 HOH HOH 2039 B HOH 2040 3 HOH HOH 2040 B HOH 2041 3 HOH HOH 2041 B HOH 2042 3 HOH HOH 2042 B HOH 2043 3 HOH HOH 2043 B HOH 2044 3 HOH HOH 2044 B HOH 2045 3 HOH HOH 2045 B HOH 2046 3 HOH HOH 2046 B HOH 2047 3 HOH HOH 2047 B HOH 2048 3 HOH HOH 2048 B HOH 2049 3 HOH HOH 2049 B HOH 2050 3 HOH HOH 2050 B HOH 2051 3 HOH HOH 2051 B HOH 2052 3 HOH HOH 2052 B HOH 2053 3 HOH HOH 2053 B HOH 2054 3 HOH HOH 2054 B HOH 2055 3 HOH HOH 2055 B HOH 2056 3 HOH HOH 2056 B HOH 2057 3 HOH HOH 2057 B HOH 2058 3 HOH HOH 2058 B HOH 2059 3 HOH HOH 2059 B HOH 2060 3 HOH HOH 2060 B HOH 2061 3 HOH HOH 2061 B HOH 2062 3 HOH HOH 2062 B HOH 2063 3 HOH HOH 2063 B HOH 2064 3 HOH HOH 2064 B HOH 2065 3 HOH HOH 2065 B HOH 2066 3 HOH HOH 2066 B HOH 2067 3 HOH HOH 2067 B HOH 2068 3 HOH HOH 2068 B ASP 1 n 1 ASP 1 A LEU 2 n 2 LEU 2 A TRP 3 n 3 TRP 3 A GLN 4 n 4 GLN 4 A PHE 5 n 5 PHE 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A MET 8 n 8 MET 8 A ILE 9 n 9 ILE 9 A LEU 10 n 10 LEU 10 A LYS 11 n 11 LYS 11 A GLU 12 n 12 GLU 12 A THR 13 n 13 THR 13 A GLY 14 n 14 GLY 14 A LYS 15 n 15 LYS 15 A LEU 16 n 16 LEU 16 A PRO 17 n 17 PRO 17 A PHE 18 n 18 PHE 18 A PRO 19 n 19 PRO 19 A TYR 20 n 20 TYR 20 A TYR 21 n 21 TYR 21 A VAL 22 n 22 VAL 22 A THR 23 n 23 THR 23 A TYR 24 n 24 TYR 24 A GLY 25 n 25 GLY 25 A CYS 26 n 26 CYS 26 A TYR 27 n 27 TYR 27 A CYS 28 n 28 CYS 28 A GLY 29 n 29 GLY 29 A VAL 30 n 30 VAL 30 A GLY 31 n 31 GLY 31 A GLY 32 n 32 GLY 32 A ARG 33 n 33 ARG 33 A GLY 34 n 34 GLY 34 A GLY 35 n 35 GLY 35 A PRO 36 n 36 PRO 36 A LYS 37 n 37 LYS 37 A ASP 38 n 38 ASP 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A ASP 41 n 41 ASP 41 A ARG 42 n 42 ARG 42 A CYS 43 n 43 CYS 43 A CYS 44 n 44 CYS 44 A PHE 45 n 45 PHE 45 A VAL 46 n 46 VAL 46 A HIS 47 n 47 HIS 47 A ASP 48 n 48 ASP 48 A CYS 49 n 49 CYS 49 A CYS 50 n 50 CYS 50 A TYR 51 n 51 TYR 51 A GLY 52 n 52 GLY 52 A LYS 53 n 53 LYS 53 A LEU 54 n 54 LEU 54 A THR 55 n 55 THR 55 A SER 56 n 56 SER 56 A CYS 57 n 57 CYS 57 A LYS 58 n 58 LYS 58 A PRO 59 n 59 PRO 59 A LYS 60 n 60 LYS 60 A THR 61 n 61 THR 61 A ASP 62 n 62 ASP 62 A ARG 63 n 63 ARG 63 A TYR 64 n 64 TYR 64 A SER 65 n 65 SER 65 A TYR 66 n 66 TYR 66 A SER 67 n 67 SER 67 A ARG 68 n 68 ARG 68 A LYS 69 n 69 LYS 69 A ASP 70 n 70 ASP 70 A GLY 71 n 71 GLY 71 A THR 72 n 72 THR 72 A ILE 73 n 73 ILE 73 A VAL 74 n 74 VAL 74 A CYS 75 n 75 CYS 75 A GLY 76 n 76 GLY 76 A GLU 77 n 77 GLU 77 A n 78 78 A ASP 79 n 79 ASP 79 A PRO 80 n 80 PRO 80 A CYS 81 n 81 CYS 81 A ARG 82 n 82 ARG 82 A LYS 83 n 83 LYS 83 A GLU 84 n 84 GLU 84 A ILE 85 n 85 ILE 85 A CYS 86 n 86 CYS 86 A GLU 87 n 87 GLU 87 A CYS 88 n 88 CYS 88 A ASP 89 n 89 ASP 89 A LYS 90 n 90 LYS 90 A ALA 91 n 91 ALA 91 A ALA 92 n 92 ALA 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A CYS 95 n 95 CYS 95 A PHE 96 n 96 PHE 96 A ARG 97 n 97 ARG 97 A GLU 98 n 98 GLU 98 A ASN 99 n 99 ASN 99 A LEU 100 n 100 LEU 100 A ASP 101 n 101 ASP 101 A THR 102 n 102 THR 102 A TYR 103 n 103 TYR 103 A ASN 104 n 104 ASN 104 A LYS 105 n 105 LYS 105 A LYS 106 n 106 LYS 106 A TYR 107 n 107 TYR 107 A MET 108 n 108 MET 108 A SER 109 n 109 SER 109 A TYR 110 n 110 TYR 110 A LEU 111 n 111 LEU 111 A LYS 112 n 112 LYS 112 A SER 113 n 113 SER 113 A LEU 114 n 114 LEU 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A LYS 117 n 117 LYS 117 A n 118 118 A n 119 119 A ASP 120 n 120 ASP 120 A ASP 121 n 121 ASP 121 A CYS 122 n 122 CYS 122 A ASP 1 n 1 ASP 1 B LEU 2 n 2 LEU 2 B TRP 3 n 3 TRP 3 B GLN 4 n 4 GLN 4 B PHE 5 n 5 PHE 5 B GLY 6 n 6 GLY 6 B LYS 7 n 7 LYS 7 B MET 8 n 8 MET 8 B ILE 9 n 9 ILE 9 B LEU 10 n 10 LEU 10 B LYS 11 n 11 LYS 11 B GLU 12 n 12 GLU 12 B THR 13 n 13 THR 13 B GLY 14 n 14 GLY 14 B LYS 15 n 15 LYS 15 B LEU 16 n 16 LEU 16 B PRO 17 n 17 PRO 17 B PHE 18 n 18 PHE 18 B PRO 19 n 19 PRO 19 B TYR 20 n 20 TYR 20 B TYR 21 n 21 TYR 21 B VAL 22 n 22 VAL 22 B THR 23 n 23 THR 23 B TYR 24 n 24 TYR 24 B GLY 25 n 25 GLY 25 B CYS 26 n 26 CYS 26 B TYR 27 n 27 TYR 27 B CYS 28 n 28 CYS 28 B GLY 29 n 29 GLY 29 B VAL 30 n 30 VAL 30 B GLY 31 n 31 GLY 31 B GLY 32 n 32 GLY 32 B ARG 33 n 33 ARG 33 B GLY 34 n 34 GLY 34 B GLY 35 n 35 GLY 35 B PRO 36 n 36 PRO 36 B LYS 37 n 37 LYS 37 B ASP 38 n 38 ASP 38 B ALA 39 n 39 ALA 39 B THR 40 n 40 THR 40 B ASP 41 n 41 ASP 41 B ARG 42 n 42 ARG 42 B CYS 43 n 43 CYS 43 B CYS 44 n 44 CYS 44 B PHE 45 n 45 PHE 45 B VAL 46 n 46 VAL 46 B HIS 47 n 47 HIS 47 B ASP 48 n 48 ASP 48 B CYS 49 n 49 CYS 49 B CYS 50 n 50 CYS 50 B TYR 51 n 51 TYR 51 B GLY 52 n 52 GLY 52 B LYS 53 n 53 LYS 53 B LEU 54 n 54 LEU 54 B THR 55 n 55 THR 55 B SER 56 n 56 SER 56 B CYS 57 n 57 CYS 57 B LYS 58 n 58 LYS 58 B PRO 59 n 59 PRO 59 B LYS 60 n 60 LYS 60 B THR 61 n 61 THR 61 B ASP 62 n 62 ASP 62 B ARG 63 n 63 ARG 63 B TYR 64 n 64 TYR 64 B SER 65 n 65 SER 65 B TYR 66 n 66 TYR 66 B SER 67 n 67 SER 67 B ARG 68 n 68 ARG 68 B LYS 69 n 69 LYS 69 B ASP 70 n 70 ASP 70 B GLY 71 n 71 GLY 71 B THR 72 n 72 THR 72 B ILE 73 n 73 ILE 73 B VAL 74 n 74 VAL 74 B CYS 75 n 75 CYS 75 B GLY 76 n 76 GLY 76 B GLU 77 n 77 GLU 77 B n 78 78 B ASP 79 n 79 ASP 79 B PRO 80 n 80 PRO 80 B CYS 81 n 81 CYS 81 B ARG 82 n 82 ARG 82 B LYS 83 n 83 LYS 83 B GLU 84 n 84 GLU 84 B ILE 85 n 85 ILE 85 B CYS 86 n 86 CYS 86 B GLU 87 n 87 GLU 87 B CYS 88 n 88 CYS 88 B ASP 89 n 89 ASP 89 B LYS 90 n 90 LYS 90 B ALA 91 n 91 ALA 91 B ALA 92 n 92 ALA 92 B ALA 93 n 93 ALA 93 B VAL 94 n 94 VAL 94 B CYS 95 n 95 CYS 95 B PHE 96 n 96 PHE 96 B ARG 97 n 97 ARG 97 B GLU 98 n 98 GLU 98 B ASN 99 n 99 ASN 99 B LEU 100 n 100 LEU 100 B ASP 101 n 101 ASP 101 B THR 102 n 102 THR 102 B TYR 103 n 103 TYR 103 B ASN 104 n 104 ASN 104 B LYS 105 n 105 LYS 105 B LYS 106 n 106 LYS 106 B TYR 107 n 107 TYR 107 B MET 108 n 108 MET 108 B SER 109 n 109 SER 109 B TYR 110 n 110 TYR 110 B LEU 111 n 111 LEU 111 B LYS 112 n 112 LYS 112 B SER 113 n 113 SER 113 B LEU 114 n 114 LEU 114 B CYS 115 n 115 CYS 115 B LYS 116 n 116 LYS 116 B LYS 117 n 117 LYS 117 B n 118 118 B ALA 119 n 119 ALA 119 B ASP 120 n 120 ASP 120 B ASP 121 n 121 ASP 121 B CYS 122 n 122 CYS 122 B author_and_software_defined_assembly PQS 2 dimeric author_and_software_defined_assembly PQS 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_757 -x+2,y,-z+2 crystal symmetry operation 68.3192206168 0.0000000000 80.3654670712 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_557 -x,y,-z+2 crystal symmetry operation -53.7187793832 0.0000000000 80.3654670712 A N SER 67 A N SER 67 A O VAL 74 A O VAL 74 B N SER 67 B N SER 67 B O VAL 74 B O VAL 74 1 A HOH 2013 E HOH 1 B HOH 2010 F HOH 1 B HOH 2031 F HOH 1 A ASN 78 A ASN 78 1 Y 1 A UNK 118 A UNK 118 1 Y 1 A ALA 119 A ALA 119 1 Y 1 B ASN 78 B ASN 78 1 Y 1 B UNK 118 B UNK 118 1 Y 1 12.40 1.50 119.30 131.70 B B B C N CA LYS PRO PRO 58 59 59 Y 1 A LEU 54 -106.37 72.15 1 A LYS 58 -116.70 70.14 1 A ARG 68 -146.18 43.19 1 A LYS 116 -126.79 -139.04 1 B TYR 27 -106.20 -63.14 1 B ARG 68 -147.87 43.61 1 B LEU 114 152.74 -13.42 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP IOH_XPLOR_PAR.TXT IOH_XPLOR_TOP.TXT 33.5 1.18 0.00 11.25 -7.22 0.00 6.05 0.255 0.012 0.201 0.201 2.40 14.66 423 8166 5.2 85.9 RANDOM 1 RESTRAINED THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1CL5 FLAT MODEL 37.6966 0.321272 0.37 0.29 5.00 0.54 0.40 2.40 14.66 135 2030 8 0 1887 0.007 1.4 22.6 0.80 3.10 1.50 4.51 2.00 5.24 2.00 7.17 2.50 0.365 0.049 0.301 2.51 55 991 8 5.3 89.6 20.1 2.400 14.700 1GMZ 8166 0.11400 1 2.900 85.9 0.26400 2.40 2.51 1 89.6 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing MOLREP Crystal structure of the D49 phospholipase A2 piratoxin III from Bothrops pirajai. 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ASP 1 A ASP 1 HELX_P A GLY 14 A GLY 14 1 1 14 A LEU 16 A LEU 16 HELX_P A TYR 21 A TYR 21 1 2 6 A TYR 27 A TYR 27 HELX_P A GLY 31 A GLY 31 5 3 5 A ASP 38 A ASP 38 HELX_P A LYS 53 A LYS 53 1 4 16 A ASP 79 A ASP 79 HELX_P A ASN 99 A ASN 99 1 5 21 A LEU 100 A LEU 100 HELX_P A TYR 103 A TYR 103 5 6 4 A ASN 104 A ASN 104 HELX_P A TYR 107 A TYR 107 5 7 4 A LEU 111 A LEU 111 HELX_P A CYS 115 A CYS 115 5 8 5 B ASP 1 B ASP 1 HELX_P B GLY 14 B GLY 14 1 9 14 B LEU 16 B LEU 16 HELX_P B TYR 21 B TYR 21 1 10 6 B ASP 38 B ASP 38 HELX_P B LYS 53 B LYS 53 1 11 16 B ASP 79 B ASP 79 HELX_P B ASN 99 B ASN 99 1 12 21 B LEU 100 B LEU 100 HELX_P B TYR 103 B TYR 103 5 13 4 disulf 2.028 A CYS 26 A SG CYS 26 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.024 A CYS 28 A SG CYS 28 1_555 A CYS 44 A SG CYS 44 1_555 disulf 2.023 A CYS 43 A SG CYS 43 1_555 A CYS 95 A SG CYS 95 1_555 disulf 2.032 A CYS 49 A SG CYS 49 1_555 A CYS 122 A SG CYS 122 1_555 disulf 2.026 A CYS 50 A SG CYS 50 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.029 A CYS 57 A SG CYS 57 1_555 A CYS 81 A SG CYS 81 1_555 disulf 2.032 A CYS 75 A SG CYS 75 1_555 A CYS 86 A SG CYS 86 1_555 disulf 2.030 B CYS 26 B SG CYS 26 1_555 B CYS 115 B SG CYS 115 1_555 disulf 2.026 B CYS 28 B SG CYS 28 1_555 B CYS 44 B SG CYS 44 1_555 disulf 2.030 B CYS 43 B SG CYS 43 1_555 B CYS 95 B SG CYS 95 1_555 disulf 2.031 B CYS 49 B SG CYS 49 1_555 B CYS 122 B SG CYS 122 1_555 disulf 2.024 B CYS 50 B SG CYS 50 1_555 B CYS 88 B SG CYS 88 1_555 disulf 2.036 B CYS 57 B SG CYS 57 1_555 B CYS 81 B SG CYS 81 1_555 disulf 2.032 B CYS 75 B SG CYS 75 1_555 B CYS 86 B SG CYS 86 1_555 HYDROLASE HYDROLASE, PHOSPHOLIPASE A2, NEUROTOXIC, BOTHROPS PIRAJAI A PHE 18 A PHE 18 1 A PRO 19 A PRO 19 0.59 B PHE 18 B PHE 18 1 B PRO 19 B PRO 19 1.22 given -0.999920 0.006062 0.011136 -0.006199 -0.999905 -0.012292 0.011061 -0.012360 0.999862 6.88900 23.77400 -0.31800 1GMZ PDB 1 1GMZ 1 122 1GMZ 1 122 1GMZ A 1 1 122 1 122 1GMZ 1 122 1GMZ B 1 1 122 2 2 anti-parallel anti-parallel A TYR 66 A TYR 66 A SER 67 A SER 67 A VAL 74 A VAL 74 A CYS 75 A CYS 75 B TYR 66 B TYR 66 B SER 67 B SER 67 B VAL 74 B VAL 74 B CYS 75 B CYS 75 BINDING SITE FOR RESIDUE IPA A 200 A IPA 200 Software 2 BINDING SITE FOR RESIDUE IPA B 200 B IPA 200 Software 3 A PHE 5 A PHE 5 2 1_555 A TYR 21 A TYR 21 2 1_555 B PHE 5 B PHE 5 3 1_555 B TYR 21 B TYR 21 3 1_555 B VAL 22 B VAL 22 3 1_555 5 C 1 2 1