0.016388
0.000000
0.010954
0.000000
0.009907
0.000000
0.000000
0.000000
0.024886
0.00000
0.00000
0.00000
Rigden, D.J.
Lee, W.H.
Polikarpov, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
123.76
90.00
61.019
100.937
48.333
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H8 O
60.095
ISOPROPYL ALCOHOL
2-PROPANOL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C4 H9 N O2
103.120
UNKNOWN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
S
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
R
C
N
321
N
O
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
N
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
doub
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
255
10.1107/S0907444902021467
12554936
The Structure of the D49 Phospholipase A2 Piratoxin III from Bothrops Pirajai Reveals Unprecedented Structural Displacement of the Calcium-Binding Loop: Possible Relationship to Cooperative Substrate Binding
2003
10.2210/pdb1gmz/pdb
pdb_00001gmz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290.0
1
IMAGE PLATE
2000-09-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.535
1.0
D03B-MX1
LNLS
1.535
SYNCHROTRON
LNLS BEAMLINE D03B-MX1
13856.016
PHOSPHOLIPASE A2
3.1.1.4
2
nat
polymer
60.095
ISOPROPYL ALCOHOL
2
syn
non-polymer
18.015
water
135
nat
water
no
no
DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKLTSCKPKTDRYSYSRKDGTIVCGENDP
CRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKK(UNK)ADDC
DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKLTSCKPKTDRYSYSRKDGTIVCGENDP
CRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKKXADDC
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
SNAKE
sample
113192
BOTHROPS PIRAJAI
VENOM
1
2.32
45
5.30
18% 2-PROPANOL, 21% PEG 4000 AND 0.1 M NA CITRATE PH 5.3
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-11-01
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2001-09-27
REL
REL
1
A
O
HOH
2005
5.99
IPA
ISOPROPYL ALCOHOL
HOH
water
NOT YET DEPOSITED IN SEQUENCE DATABASES
RESIDUE UNK(117) IS UNKNOWN IN CHAINS A,B
1CL5
PDB ENTRY 1CL5
PDB
experimental model
IPA
200
2
IPA
IPA
200
A
IPA
200
2
IPA
IPA
200
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
HOH
2053
3
HOH
HOH
2053
B
HOH
2054
3
HOH
HOH
2054
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2056
3
HOH
HOH
2056
B
HOH
2057
3
HOH
HOH
2057
B
HOH
2058
3
HOH
HOH
2058
B
HOH
2059
3
HOH
HOH
2059
B
HOH
2060
3
HOH
HOH
2060
B
HOH
2061
3
HOH
HOH
2061
B
HOH
2062
3
HOH
HOH
2062
B
HOH
2063
3
HOH
HOH
2063
B
HOH
2064
3
HOH
HOH
2064
B
HOH
2065
3
HOH
HOH
2065
B
HOH
2066
3
HOH
HOH
2066
B
HOH
2067
3
HOH
HOH
2067
B
HOH
2068
3
HOH
HOH
2068
B
ASP
1
n
1
ASP
1
A
LEU
2
n
2
LEU
2
A
TRP
3
n
3
TRP
3
A
GLN
4
n
4
GLN
4
A
PHE
5
n
5
PHE
5
A
GLY
6
n
6
GLY
6
A
LYS
7
n
7
LYS
7
A
MET
8
n
8
MET
8
A
ILE
9
n
9
ILE
9
A
LEU
10
n
10
LEU
10
A
LYS
11
n
11
LYS
11
A
GLU
12
n
12
GLU
12
A
THR
13
n
13
THR
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
LEU
16
n
16
LEU
16
A
PRO
17
n
17
PRO
17
A
PHE
18
n
18
PHE
18
A
PRO
19
n
19
PRO
19
A
TYR
20
n
20
TYR
20
A
TYR
21
n
21
TYR
21
A
VAL
22
n
22
VAL
22
A
THR
23
n
23
THR
23
A
TYR
24
n
24
TYR
24
A
GLY
25
n
25
GLY
25
A
CYS
26
n
26
CYS
26
A
TYR
27
n
27
TYR
27
A
CYS
28
n
28
CYS
28
A
GLY
29
n
29
GLY
29
A
VAL
30
n
30
VAL
30
A
GLY
31
n
31
GLY
31
A
GLY
32
n
32
GLY
32
A
ARG
33
n
33
ARG
33
A
GLY
34
n
34
GLY
34
A
GLY
35
n
35
GLY
35
A
PRO
36
n
36
PRO
36
A
LYS
37
n
37
LYS
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
THR
40
n
40
THR
40
A
ASP
41
n
41
ASP
41
A
ARG
42
n
42
ARG
42
A
CYS
43
n
43
CYS
43
A
CYS
44
n
44
CYS
44
A
PHE
45
n
45
PHE
45
A
VAL
46
n
46
VAL
46
A
HIS
47
n
47
HIS
47
A
ASP
48
n
48
ASP
48
A
CYS
49
n
49
CYS
49
A
CYS
50
n
50
CYS
50
A
TYR
51
n
51
TYR
51
A
GLY
52
n
52
GLY
52
A
LYS
53
n
53
LYS
53
A
LEU
54
n
54
LEU
54
A
THR
55
n
55
THR
55
A
SER
56
n
56
SER
56
A
CYS
57
n
57
CYS
57
A
LYS
58
n
58
LYS
58
A
PRO
59
n
59
PRO
59
A
LYS
60
n
60
LYS
60
A
THR
61
n
61
THR
61
A
ASP
62
n
62
ASP
62
A
ARG
63
n
63
ARG
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
TYR
66
n
66
TYR
66
A
SER
67
n
67
SER
67
A
ARG
68
n
68
ARG
68
A
LYS
69
n
69
LYS
69
A
ASP
70
n
70
ASP
70
A
GLY
71
n
71
GLY
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
VAL
74
n
74
VAL
74
A
CYS
75
n
75
CYS
75
A
GLY
76
n
76
GLY
76
A
GLU
77
n
77
GLU
77
A
n
78
78
A
ASP
79
n
79
ASP
79
A
PRO
80
n
80
PRO
80
A
CYS
81
n
81
CYS
81
A
ARG
82
n
82
ARG
82
A
LYS
83
n
83
LYS
83
A
GLU
84
n
84
GLU
84
A
ILE
85
n
85
ILE
85
A
CYS
86
n
86
CYS
86
A
GLU
87
n
87
GLU
87
A
CYS
88
n
88
CYS
88
A
ASP
89
n
89
ASP
89
A
LYS
90
n
90
LYS
90
A
ALA
91
n
91
ALA
91
A
ALA
92
n
92
ALA
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
CYS
95
n
95
CYS
95
A
PHE
96
n
96
PHE
96
A
ARG
97
n
97
ARG
97
A
GLU
98
n
98
GLU
98
A
ASN
99
n
99
ASN
99
A
LEU
100
n
100
LEU
100
A
ASP
101
n
101
ASP
101
A
THR
102
n
102
THR
102
A
TYR
103
n
103
TYR
103
A
ASN
104
n
104
ASN
104
A
LYS
105
n
105
LYS
105
A
LYS
106
n
106
LYS
106
A
TYR
107
n
107
TYR
107
A
MET
108
n
108
MET
108
A
SER
109
n
109
SER
109
A
TYR
110
n
110
TYR
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
SER
113
n
113
SER
113
A
LEU
114
n
114
LEU
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
LYS
117
n
117
LYS
117
A
n
118
118
A
n
119
119
A
ASP
120
n
120
ASP
120
A
ASP
121
n
121
ASP
121
A
CYS
122
n
122
CYS
122
A
ASP
1
n
1
ASP
1
B
LEU
2
n
2
LEU
2
B
TRP
3
n
3
TRP
3
B
GLN
4
n
4
GLN
4
B
PHE
5
n
5
PHE
5
B
GLY
6
n
6
GLY
6
B
LYS
7
n
7
LYS
7
B
MET
8
n
8
MET
8
B
ILE
9
n
9
ILE
9
B
LEU
10
n
10
LEU
10
B
LYS
11
n
11
LYS
11
B
GLU
12
n
12
GLU
12
B
THR
13
n
13
THR
13
B
GLY
14
n
14
GLY
14
B
LYS
15
n
15
LYS
15
B
LEU
16
n
16
LEU
16
B
PRO
17
n
17
PRO
17
B
PHE
18
n
18
PHE
18
B
PRO
19
n
19
PRO
19
B
TYR
20
n
20
TYR
20
B
TYR
21
n
21
TYR
21
B
VAL
22
n
22
VAL
22
B
THR
23
n
23
THR
23
B
TYR
24
n
24
TYR
24
B
GLY
25
n
25
GLY
25
B
CYS
26
n
26
CYS
26
B
TYR
27
n
27
TYR
27
B
CYS
28
n
28
CYS
28
B
GLY
29
n
29
GLY
29
B
VAL
30
n
30
VAL
30
B
GLY
31
n
31
GLY
31
B
GLY
32
n
32
GLY
32
B
ARG
33
n
33
ARG
33
B
GLY
34
n
34
GLY
34
B
GLY
35
n
35
GLY
35
B
PRO
36
n
36
PRO
36
B
LYS
37
n
37
LYS
37
B
ASP
38
n
38
ASP
38
B
ALA
39
n
39
ALA
39
B
THR
40
n
40
THR
40
B
ASP
41
n
41
ASP
41
B
ARG
42
n
42
ARG
42
B
CYS
43
n
43
CYS
43
B
CYS
44
n
44
CYS
44
B
PHE
45
n
45
PHE
45
B
VAL
46
n
46
VAL
46
B
HIS
47
n
47
HIS
47
B
ASP
48
n
48
ASP
48
B
CYS
49
n
49
CYS
49
B
CYS
50
n
50
CYS
50
B
TYR
51
n
51
TYR
51
B
GLY
52
n
52
GLY
52
B
LYS
53
n
53
LYS
53
B
LEU
54
n
54
LEU
54
B
THR
55
n
55
THR
55
B
SER
56
n
56
SER
56
B
CYS
57
n
57
CYS
57
B
LYS
58
n
58
LYS
58
B
PRO
59
n
59
PRO
59
B
LYS
60
n
60
LYS
60
B
THR
61
n
61
THR
61
B
ASP
62
n
62
ASP
62
B
ARG
63
n
63
ARG
63
B
TYR
64
n
64
TYR
64
B
SER
65
n
65
SER
65
B
TYR
66
n
66
TYR
66
B
SER
67
n
67
SER
67
B
ARG
68
n
68
ARG
68
B
LYS
69
n
69
LYS
69
B
ASP
70
n
70
ASP
70
B
GLY
71
n
71
GLY
71
B
THR
72
n
72
THR
72
B
ILE
73
n
73
ILE
73
B
VAL
74
n
74
VAL
74
B
CYS
75
n
75
CYS
75
B
GLY
76
n
76
GLY
76
B
GLU
77
n
77
GLU
77
B
n
78
78
B
ASP
79
n
79
ASP
79
B
PRO
80
n
80
PRO
80
B
CYS
81
n
81
CYS
81
B
ARG
82
n
82
ARG
82
B
LYS
83
n
83
LYS
83
B
GLU
84
n
84
GLU
84
B
ILE
85
n
85
ILE
85
B
CYS
86
n
86
CYS
86
B
GLU
87
n
87
GLU
87
B
CYS
88
n
88
CYS
88
B
ASP
89
n
89
ASP
89
B
LYS
90
n
90
LYS
90
B
ALA
91
n
91
ALA
91
B
ALA
92
n
92
ALA
92
B
ALA
93
n
93
ALA
93
B
VAL
94
n
94
VAL
94
B
CYS
95
n
95
CYS
95
B
PHE
96
n
96
PHE
96
B
ARG
97
n
97
ARG
97
B
GLU
98
n
98
GLU
98
B
ASN
99
n
99
ASN
99
B
LEU
100
n
100
LEU
100
B
ASP
101
n
101
ASP
101
B
THR
102
n
102
THR
102
B
TYR
103
n
103
TYR
103
B
ASN
104
n
104
ASN
104
B
LYS
105
n
105
LYS
105
B
LYS
106
n
106
LYS
106
B
TYR
107
n
107
TYR
107
B
MET
108
n
108
MET
108
B
SER
109
n
109
SER
109
B
TYR
110
n
110
TYR
110
B
LEU
111
n
111
LEU
111
B
LYS
112
n
112
LYS
112
B
SER
113
n
113
SER
113
B
LEU
114
n
114
LEU
114
B
CYS
115
n
115
CYS
115
B
LYS
116
n
116
LYS
116
B
LYS
117
n
117
LYS
117
B
n
118
118
B
ALA
119
n
119
ALA
119
B
ASP
120
n
120
ASP
120
B
ASP
121
n
121
ASP
121
B
CYS
122
n
122
CYS
122
B
author_and_software_defined_assembly
PQS
2
dimeric
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_757
-x+2,y,-z+2
crystal symmetry operation
68.3192206168
0.0000000000
80.3654670712
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_557
-x,y,-z+2
crystal symmetry operation
-53.7187793832
0.0000000000
80.3654670712
A
N
SER
67
A
N
SER
67
A
O
VAL
74
A
O
VAL
74
B
N
SER
67
B
N
SER
67
B
O
VAL
74
B
O
VAL
74
1
A
HOH
2013
E
HOH
1
B
HOH
2010
F
HOH
1
B
HOH
2031
F
HOH
1
A
ASN
78
A
ASN
78
1
Y
1
A
UNK
118
A
UNK
118
1
Y
1
A
ALA
119
A
ALA
119
1
Y
1
B
ASN
78
B
ASN
78
1
Y
1
B
UNK
118
B
UNK
118
1
Y
1
12.40
1.50
119.30
131.70
B
B
B
C
N
CA
LYS
PRO
PRO
58
59
59
Y
1
A
LEU
54
-106.37
72.15
1
A
LYS
58
-116.70
70.14
1
A
ARG
68
-146.18
43.19
1
A
LYS
116
-126.79
-139.04
1
B
TYR
27
-106.20
-63.14
1
B
ARG
68
-147.87
43.61
1
B
LEU
114
152.74
-13.42
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
IOH_XPLOR_PAR.TXT
IOH_XPLOR_TOP.TXT
33.5
1.18
0.00
11.25
-7.22
0.00
6.05
0.255
0.012
0.201
0.201
2.40
14.66
423
8166
5.2
85.9
RANDOM
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1CL5
FLAT MODEL
37.6966
0.321272
0.37
0.29
5.00
0.54
0.40
2.40
14.66
135
2030
8
0
1887
0.007
1.4
22.6
0.80
3.10
1.50
4.51
2.00
5.24
2.00
7.17
2.50
0.365
0.049
0.301
2.51
55
991
8
5.3
89.6
20.1
2.400
14.700
1GMZ
8166
0.11400
1
2.900
85.9
0.26400
2.40
2.51
1
89.6
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
MOLREP
Crystal structure of the D49 phospholipase A2 piratoxin III from Bothrops pirajai.
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASP
1
A
ASP
1
HELX_P
A
GLY
14
A
GLY
14
1
1
14
A
LEU
16
A
LEU
16
HELX_P
A
TYR
21
A
TYR
21
1
2
6
A
TYR
27
A
TYR
27
HELX_P
A
GLY
31
A
GLY
31
5
3
5
A
ASP
38
A
ASP
38
HELX_P
A
LYS
53
A
LYS
53
1
4
16
A
ASP
79
A
ASP
79
HELX_P
A
ASN
99
A
ASN
99
1
5
21
A
LEU
100
A
LEU
100
HELX_P
A
TYR
103
A
TYR
103
5
6
4
A
ASN
104
A
ASN
104
HELX_P
A
TYR
107
A
TYR
107
5
7
4
A
LEU
111
A
LEU
111
HELX_P
A
CYS
115
A
CYS
115
5
8
5
B
ASP
1
B
ASP
1
HELX_P
B
GLY
14
B
GLY
14
1
9
14
B
LEU
16
B
LEU
16
HELX_P
B
TYR
21
B
TYR
21
1
10
6
B
ASP
38
B
ASP
38
HELX_P
B
LYS
53
B
LYS
53
1
11
16
B
ASP
79
B
ASP
79
HELX_P
B
ASN
99
B
ASN
99
1
12
21
B
LEU
100
B
LEU
100
HELX_P
B
TYR
103
B
TYR
103
5
13
4
disulf
2.028
A
CYS
26
A
SG
CYS
26
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.024
A
CYS
28
A
SG
CYS
28
1_555
A
CYS
44
A
SG
CYS
44
1_555
disulf
2.023
A
CYS
43
A
SG
CYS
43
1_555
A
CYS
95
A
SG
CYS
95
1_555
disulf
2.032
A
CYS
49
A
SG
CYS
49
1_555
A
CYS
122
A
SG
CYS
122
1_555
disulf
2.026
A
CYS
50
A
SG
CYS
50
1_555
A
CYS
88
A
SG
CYS
88
1_555
disulf
2.029
A
CYS
57
A
SG
CYS
57
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.032
A
CYS
75
A
SG
CYS
75
1_555
A
CYS
86
A
SG
CYS
86
1_555
disulf
2.030
B
CYS
26
B
SG
CYS
26
1_555
B
CYS
115
B
SG
CYS
115
1_555
disulf
2.026
B
CYS
28
B
SG
CYS
28
1_555
B
CYS
44
B
SG
CYS
44
1_555
disulf
2.030
B
CYS
43
B
SG
CYS
43
1_555
B
CYS
95
B
SG
CYS
95
1_555
disulf
2.031
B
CYS
49
B
SG
CYS
49
1_555
B
CYS
122
B
SG
CYS
122
1_555
disulf
2.024
B
CYS
50
B
SG
CYS
50
1_555
B
CYS
88
B
SG
CYS
88
1_555
disulf
2.036
B
CYS
57
B
SG
CYS
57
1_555
B
CYS
81
B
SG
CYS
81
1_555
disulf
2.032
B
CYS
75
B
SG
CYS
75
1_555
B
CYS
86
B
SG
CYS
86
1_555
HYDROLASE
HYDROLASE, PHOSPHOLIPASE A2, NEUROTOXIC, BOTHROPS PIRAJAI
A
PHE
18
A
PHE
18
1
A
PRO
19
A
PRO
19
0.59
B
PHE
18
B
PHE
18
1
B
PRO
19
B
PRO
19
1.22
given
-0.999920
0.006062
0.011136
-0.006199
-0.999905
-0.012292
0.011061
-0.012360
0.999862
6.88900
23.77400
-0.31800
1GMZ
PDB
1
1GMZ
1
122
1GMZ
1
122
1GMZ
A
1
1
122
1
122
1GMZ
1
122
1GMZ
B
1
1
122
2
2
anti-parallel
anti-parallel
A
TYR
66
A
TYR
66
A
SER
67
A
SER
67
A
VAL
74
A
VAL
74
A
CYS
75
A
CYS
75
B
TYR
66
B
TYR
66
B
SER
67
B
SER
67
B
VAL
74
B
VAL
74
B
CYS
75
B
CYS
75
BINDING SITE FOR RESIDUE IPA A 200
A
IPA
200
Software
2
BINDING SITE FOR RESIDUE IPA B 200
B
IPA
200
Software
3
A
PHE
5
A
PHE
5
2
1_555
A
TYR
21
A
TYR
21
2
1_555
B
PHE
5
B
PHE
5
3
1_555
B
TYR
21
B
TYR
21
3
1_555
B
VAL
22
B
VAL
22
3
1_555
5
C 1 2 1