0.024752
0.014291
0.000000
0.000000
0.028582
0.000000
0.000000
0.000000
0.006297
0.00000
0.00000
0.00000
ASP 33 - PRO 34 OMEGA = 146.32 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Scheidig, A.
Franken, S.M.
Corrie, J.E.T.
Reid, G.P.
Wittinghofer, A.
Pai, E.F.
Goody, R.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
40.400
40.400
158.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C18 H23 N6 O16 P3
672.327
GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER]
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
S
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
S
P
N
79
N
O
N
80
N
O
N
81
N
O
N
82
S
P
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
R
C
N
93
N
O
N
94
R
C
Y
95
N
N
Y
96
N
C
Y
97
N
N
Y
98
N
C
Y
99
N
C
N
100
N
O
Y
101
N
N
Y
102
N
C
N
103
N
N
Y
104
N
N
Y
105
N
C
N
106
R
C
N
107
N
C
Y
108
N
C
Y
109
N
C
N
110
N
N
N
111
N
O
N
112
N
O
Y
113
N
C
Y
114
N
C
Y
115
N
C
Y
116
N
C
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
R
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
S
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
Y
208
N
C
Y
209
N
N
Y
210
N
C
Y
211
N
C
Y
212
N
N
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
S
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
N
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
S
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
MG
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
R
C
N
376
N
O
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
sing
Y
109
N
sing
Y
110
N
doub
N
111
N
doub
Y
112
N
sing
Y
113
N
sing
N
114
N
sing
N
115
N
sing
Y
116
N
doub
N
117
N
sing
N
118
N
sing
Y
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
Y
126
N
doub
Y
127
N
sing
N
128
N
sing
Y
129
N
sing
N
130
N
sing
N
131
N
doub
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
N
135
N
sing
Y
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
253
132
150
10.1006/jmbi.1995.0541
7473708
X-ray crystal structure analysis of the catalytic domain of the oncogene product p21H-ras complexed with caged GTP and mant dGppNHp.
1995
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
50
512
Crystallographic Studies on P21H-Ras Using Synchrotron Laue Method: Improvement of Crystal Quality and Monitoring of the Gtpase Reaction at Different Time Points
1994
10.2210/pdb1gnr/pdb
pdb_00001gnr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
AREA DETECTOR
1992
XENTRONICS
M
x-ray
1
1.54
1.0
1.54
18875.191
C-H-RAS P21 PROTEIN
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
672.327
GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER]
1
syn
non-polymer
18.015
water
100
nat
water
no
no
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQH
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
1.98
37.93
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1995-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-05-11
REL
MG
MAGNESIUM ION
CAG
GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER]
HOH
water
SECONDARY STRUCTURE ELEMENTS HAVE BEEN ASSIGNED ACCORDING
TO THE PROGRAM DSSP (KABSCH, W. & SANDER, C. (1983)
BIOPOLYMERS 22, PP 2577-2637).
MG
168
2
MG
MG
168
A
CAG
167
3
CAG
CAG
167
A
HOH
170
4
HOH
HOH
170
A
HOH
172
4
HOH
HOH
172
A
HOH
173
4
HOH
HOH
173
A
HOH
177
4
HOH
HOH
177
A
HOH
178
4
HOH
HOH
178
A
HOH
179
4
HOH
HOH
179
A
HOH
180
4
HOH
HOH
180
A
HOH
181
4
HOH
HOH
181
A
HOH
184
4
HOH
HOH
184
A
HOH
186
4
HOH
HOH
186
A
HOH
193
4
HOH
HOH
193
A
HOH
195
4
HOH
HOH
195
A
HOH
196
4
HOH
HOH
196
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
204
4
HOH
HOH
204
A
HOH
210
4
HOH
HOH
210
A
HOH
213
4
HOH
HOH
213
A
HOH
215
4
HOH
HOH
215
A
HOH
220
4
HOH
HOH
220
A
HOH
222
4
HOH
HOH
222
A
HOH
228
4
HOH
HOH
228
A
HOH
231
4
HOH
HOH
231
A
HOH
235
4
HOH
HOH
235
A
HOH
237
4
HOH
HOH
237
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
257
4
HOH
HOH
257
A
HOH
259
4
HOH
HOH
259
A
HOH
262
4
HOH
HOH
262
A
HOH
263
4
HOH
HOH
263
A
HOH
264
4
HOH
HOH
264
A
HOH
265
4
HOH
HOH
265
A
HOH
267
4
HOH
HOH
267
A
HOH
273
4
HOH
HOH
273
A
HOH
276
4
HOH
HOH
276
A
HOH
277
4
HOH
HOH
277
A
HOH
281
4
HOH
HOH
281
A
HOH
282
4
HOH
HOH
282
A
HOH
305
4
HOH
HOH
305
A
HOH
309
4
HOH
HOH
309
A
HOH
316
4
HOH
HOH
316
A
HOH
320
4
HOH
HOH
320
A
HOH
335
4
HOH
HOH
335
A
HOH
338
4
HOH
HOH
338
A
HOH
343
4
HOH
HOH
343
A
HOH
367
4
HOH
HOH
367
A
HOH
378
4
HOH
HOH
378
A
HOH
381
4
HOH
HOH
381
A
HOH
389
4
HOH
HOH
389
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
397
4
HOH
HOH
397
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
414
4
HOH
HOH
414
A
HOH
423
4
HOH
HOH
423
A
HOH
432
4
HOH
HOH
432
A
HOH
434
4
HOH
HOH
434
A
HOH
439
4
HOH
HOH
439
A
HOH
448
4
HOH
HOH
448
A
HOH
450
4
HOH
HOH
450
A
HOH
452
4
HOH
HOH
452
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
468
4
HOH
HOH
468
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
474
4
HOH
HOH
474
A
HOH
476
4
HOH
HOH
476
A
HOH
478
4
HOH
HOH
478
A
HOH
482
4
HOH
HOH
482
A
HOH
483
4
HOH
HOH
483
A
HOH
486
4
HOH
HOH
486
A
HOH
488
4
HOH
HOH
488
A
HOH
489
4
HOH
HOH
489
A
HOH
492
4
HOH
HOH
492
A
HOH
493
4
HOH
HOH
493
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
513
4
HOH
HOH
513
A
HOH
515
4
HOH
HOH
515
A
HOH
518
4
HOH
HOH
518
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
523
4
HOH
HOH
523
A
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
TYR
4
n
4
TYR
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
ILE
24
n
24
ILE
24
A
GLN
25
n
25
GLN
25
A
ASN
26
n
26
ASN
26
A
HIS
27
n
27
HIS
27
A
PHE
28
n
28
PHE
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ASP
38
n
38
ASP
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
ARG
41
n
41
ARG
41
A
LYS
42
n
42
LYS
42
A
GLN
43
n
43
GLN
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ASP
47
n
47
ASP
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
THR
50
n
50
THR
50
A
CYS
51
n
51
CYS
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
ALA
66
n
66
ALA
66
A
MET
67
n
67
MET
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
MET
72
n
72
MET
72
A
ARG
73
n
73
ARG
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
PHE
78
n
78
PHE
78
A
LEU
79
n
79
LEU
79
A
CYS
80
n
80
CYS
80
A
VAL
81
n
81
VAL
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
ASN
86
n
86
ASN
86
A
THR
87
n
87
THR
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
PHE
90
n
90
PHE
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
HIS
94
n
94
HIS
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ARG
97
n
97
ARG
97
A
GLU
98
n
98
GLU
98
A
GLN
99
n
99
GLN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
LYS
104
n
104
LYS
104
A
ASP
105
n
105
ASP
105
A
SER
106
n
106
SER
106
A
ASP
107
n
107
ASP
107
A
ASP
108
n
108
ASP
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
MET
111
n
111
MET
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
CYS
118
n
118
CYS
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
ALA
121
n
121
ALA
121
A
ALA
122
n
122
ALA
122
A
ARG
123
n
123
ARG
123
A
THR
124
n
124
THR
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
SER
127
n
127
SER
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
GLN
131
n
131
GLN
131
A
ASP
132
n
132
ASP
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
ARG
135
n
135
ARG
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
ILE
139
n
139
ILE
139
A
PRO
140
n
140
PRO
140
A
TYR
141
n
141
TYR
141
A
ILE
142
n
142
ILE
142
A
GLU
143
n
143
GLU
143
A
THR
144
n
144
THR
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
THR
148
n
148
THR
148
A
ARG
149
n
149
ARG
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
VAL
152
n
152
VAL
152
A
GLU
153
n
153
GLU
153
A
ASP
154
n
154
ASP
154
A
ALA
155
n
155
ALA
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
THR
158
n
158
THR
158
A
LEU
159
n
159
LEU
159
A
VAL
160
n
160
VAL
160
A
ARG
161
n
161
ARG
161
A
GLU
162
n
162
GLU
162
A
ILE
163
n
163
ILE
163
A
ARG
164
n
164
ARG
164
A
GLN
165
n
165
GLN
165
A
HIS
166
n
166
HIS
166
A
author_defined_assembly
2
dimeric
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
THR
35
A
A
OG1
THR
35
1_555
105.8
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
THR
35
B
A
OG1
THR
35
1_555
86.1
A
THR
35
A
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
THR
35
B
A
OG1
THR
35
1_555
19.8
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O1G
CAG
1_555
161.6
A
THR
35
A
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O1G
CAG
1_555
92.5
A
THR
35
B
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O1G
CAG
1_555
112.1
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O2B
CAG
1_555
92.6
A
THR
35
A
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O2B
CAG
1_555
153.5
A
THR
35
B
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O2B
CAG
1_555
162.1
A
CAG
167
C
O1G
CAG
1_555
A
MG
168
B
MG
MG
1_555
A
CAG
167
C
O2B
CAG
1_555
71.1
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
85.8
A
THR
35
A
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
76.7
A
THR
35
B
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
76.1
A
CAG
167
C
O1G
CAG
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
101.1
A
CAG
167
C
O2B
CAG
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
85.9
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
86.5
A
THR
35
A
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
119.8
A
THR
35
B
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
118.1
A
CAG
167
C
O1G
CAG
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
82.3
A
CAG
167
C
O2B
CAG
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
79.6
A
HOH
172
D
O
HOH
1_555
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
163.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
42
A
N
LYS
42
A
O
LEU
53
A
O
LEU
53
A
O
ASP
54
A
O
ASP
54
A
N
LEU
6
A
N
LEU
6
A
O
VAL
7
A
O
VAL
7
A
N
LEU
79
A
N
LEU
79
A
O
CYS
80
A
O
CYS
80
A
N
VAL
114
A
N
VAL
114
A
O
LEU
113
A
O
LEU
113
A
N
ILE
142
A
N
ILE
142
1
A
ASP
30
-15.21
1
A
A
ASP
PRO
33
34
A
A
146.31
1
A
A
ASP
PRO
33
34
B
B
149.48
1
A
A
C
N
ILE
GLU
36
37
1.61
B
1
A
A
C
N
ILE
GLU
36
37
0.278
0.023
1.336
1.614
B
Y
1
A
ASP
30
-94.71
38.07
1
A
GLU
31
B
-138.43
-147.41
1
A
TYR
32
B
79.15
-135.68
1
A
ASP
33
B
160.33
-146.22
1
A
PRO
34
A
-36.23
137.50
1
A
PRO
34
B
-37.16
167.44
1
A
THR
35
A
-147.13
57.42
1
A
THR
35
B
-165.63
105.05
1
A
ILE
36
A
-123.94
-124.76
1
A
ILE
36
B
-97.73
-127.22
1
A
GLN
61
-44.86
153.77
1
A
GLU
62
-90.27
38.37
1
A
TYR
64
-73.82
39.12
1
A
SER
65
-46.27
-84.44
1
A
LYS
117
71.52
38.60
1
A
ALA
122
-100.47
68.94
1
A
ARG
149
80.26
-0.14
THE LOOP FROM RESIDUE GLU 31 TO ILE 36 HAS TWO ALTERNATE
CONFORMATIONS.
0.257
0.206
0.206
1.85
8.0
11161
83.2
1
2.0
1.85
8.0
100
1518
44
0
1374
0.008
1.5
27.4
2.04
1GNR
13998
0.0
0.078
1
2.3
80.0
model building
X-PLOR
3.0
refinement
X-PLOR
3.0
data reduction
XDS
phasing
X-PLOR
3.0
X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP
1
N
N
2
N
N
3
N
N
4
N
N
A
LYS
16
A
LYS
16
HELX_P
A
GLN
25
A
GLN
25
1
A1
10
A
GLU
62
A
GLU
62
HELX_P
A
MET
67
A
MET
67
5
A2A
6
A
ARG
68
A
ARG
68
HELX_P
A
THR
74
A
THR
74
1
A2B
7
A
THR
87
A
THR
87
HELX_P
A
VAL
103
A
VAL
103
1
A3
17
A
SER
127
A
SER
127
HELX_P
A
TYR
137
A
TYR
137
1
A4
11
A
VAL
152
A
VAL
152
HELX_P
A
GLN
165
A
GLN
165
1
A5
14
metalc
2.212
A
SER
17
A
OG
SER
17
1_555
A
MG
168
B
MG
MG
1_555
metalc
2.378
A
A
THR
35
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
metalc
2.297
B
A
THR
35
A
OG1
THR
35
1_555
A
MG
168
B
MG
MG
1_555
metalc
2.342
A
CAG
167
C
O1G
CAG
1_555
A
MG
168
B
MG
MG
1_555
metalc
2.262
A
CAG
167
C
O2B
CAG
1_555
A
MG
168
B
MG
MG
1_555
metalc
2.361
A
MG
168
B
MG
MG
1_555
A
HOH
172
D
O
HOH
1_555
metalc
2.285
A
MG
168
B
MG
MG
1_555
A
HOH
173
D
O
HOH
1_555
GTP BINDING PROTEIN
GTP BINDING PROTEIN
RASH_HUMAN
UNP
1
1
P01112
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKLNPPDESGPGCMSCKCVLS
1
166
1GNR
1
166
P01112
A
1
1
166
6
anti-parallel
parallel
parallel
parallel
parallel
A
GLU
37
A
GLU
37
A
ILE
46
A
ILE
46
A
GLU
49
A
GLU
49
A
THR
58
A
THR
58
A
THR
2
A
THR
2
A
GLY
10
A
GLY
10
A
GLY
77
A
GLY
77
A
ALA
83
A
ALA
83
A
MET
111
A
MET
111
A
ASN
116
A
ASN
116
A
TYR
141
A
TYR
141
A
GLU
143
A
GLU
143
BINDING SITE FOR RESIDUE MG A 168
A
MG
168
Software
5
BINDING SITE FOR RESIDUE CAG A 167
A
CAG
167
Software
29
A
SER
17
A
SER
17
5
1_555
A
THR
35
A
THR
35
5
1_555
A
CAG
167
C
CAG
5
1_555
A
HOH
172
D
HOH
5
1_555
A
HOH
173
D
HOH
5
1_555
A
GLY
12
A
GLY
12
29
1_555
A
GLY
13
A
GLY
13
29
1_555
A
VAL
14
A
VAL
14
29
1_555
A
GLY
15
A
GLY
15
29
1_555
A
LYS
16
A
LYS
16
29
1_555
A
SER
17
A
SER
17
29
1_555
A
ALA
18
A
ALA
18
29
1_555
A
PHE
28
A
PHE
28
29
1_555
A
VAL
29
A
VAL
29
29
1_555
A
ASP
30
A
ASP
30
29
1_555
A
TYR
32
A
TYR
32
29
5_675
A
TYR
32
A
TYR
32
29
1_555
A
ASP
33
A
ASP
33
29
1_555
A
ASP
33
A
ASP
33
29
5_675
A
PRO
34
A
PRO
34
29
5_675
A
THR
35
A
THR
35
29
1_555
A
GLY
60
A
GLY
60
29
1_555
A
ASN
116
A
ASN
116
29
1_555
A
LYS
117
A
LYS
117
29
1_555
A
ASP
119
A
ASP
119
29
1_555
A
SER
145
A
SER
145
29
1_555
A
ALA
146
A
ALA
146
29
1_555
A
LYS
147
A
LYS
147
29
1_555
A
MG
168
B
MG
29
1_555
A
HOH
172
D
HOH
29
1_555
A
HOH
173
D
HOH
29
1_555
A
HOH
281
D
HOH
29
1_555
A
HOH
282
D
HOH
29
1_555
A
HOH
523
D
HOH
29
1_555
154
P 32 2 1