0.033319
0.000000
0.000000
0.000000
0.018141
0.000000
0.000000
0.000000
0.015524
0.00000
0.00000
0.00000
Knight, D.
Harris, R.
Moss, S.
Driscoll, P.C.
Keep, N.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
30.013
55.124
64.418
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
NI
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
R
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
5556
10.1074/JBC.M109753200
11729197
The X-Ray Crystal Structure and Putative Ligand-Derived Peptide Binding Properties of Gamma-Aminobutyric Acid Receptor Type a Receptor-Associated Protein
2002
10.2210/pdb1gnu/pdb
pdb_00001gnu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2001-04-15
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX14.1
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX14.1
13942.047
GABARAP
1
man
polymer
58.693
NICKEL (II) ION
1
syn
non-polymer
18.015
water
100
nat
water
GABA(A) RECEPTOR ASSOCIATED PROTEIN, GABARAP, FLC3B, MM46 (HT004 PROTEIN) (MAP1 LIGHT CHAIN 3 RELATED PROTEIN)
no
no
MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV
NNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV
NNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
NEURONAL
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
PET28 -HIS
1
1.91
69
8.50
18MG/ML GABARAP, 50MM TRIS PH8.5, 0.25M NACL,10%(W/V) PEGMONO, pH 8.50
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-12-03
1
1
2011-07-13
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2001-10-09
REL
REL
NI
NICKEL (II) ION
HOH
water
1EO6
PDB
experimental model
NI
200
2
NI
NI
200
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
PHE
3
n
3
PHE
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
LYS
6
n
6
LYS
6
A
GLU
7
n
7
GLU
7
A
GLU
8
n
8
GLU
8
A
HIS
9
n
9
HIS
9
A
PRO
10
n
10
PRO
10
A
PHE
11
n
11
PHE
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
ARG
15
n
15
ARG
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
ILE
21
n
21
ILE
21
A
ARG
22
n
22
ARG
22
A
LYS
23
n
23
LYS
23
A
LYS
24
n
24
LYS
24
A
TYR
25
n
25
TYR
25
A
PRO
26
n
26
PRO
26
A
ASP
27
n
27
ASP
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
PRO
30
n
30
PRO
30
A
VAL
31
n
31
VAL
31
A
ILE
32
n
32
ILE
32
A
VAL
33
n
33
VAL
33
A
GLU
34
n
34
GLU
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
PRO
37
n
37
PRO
37
A
LYS
38
n
38
LYS
38
A
ALA
39
n
39
ALA
39
A
ARG
40
n
40
ARG
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
ASP
43
n
43
ASP
43
A
LEU
44
n
44
LEU
44
A
ASP
45
n
45
ASP
45
A
LYS
46
n
46
LYS
46
A
LYS
47
n
47
LYS
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
VAL
51
n
51
VAL
51
A
PRO
52
n
52
PRO
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
LEU
55
n
55
LEU
55
A
THR
56
n
56
THR
56
A
VAL
57
n
57
VAL
57
A
GLY
58
n
58
GLY
58
A
GLN
59
n
59
GLN
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
PHE
62
n
62
PHE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
ARG
65
n
65
ARG
65
A
LYS
66
n
66
LYS
66
A
ARG
67
n
67
ARG
67
A
ILE
68
n
68
ILE
68
A
HIS
69
n
69
HIS
69
A
LEU
70
n
70
LEU
70
A
ARG
71
n
71
ARG
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
ASP
74
n
74
ASP
74
A
ALA
75
n
75
ALA
75
A
LEU
76
n
76
LEU
76
A
PHE
77
n
77
PHE
77
A
PHE
78
n
78
PHE
78
A
PHE
79
n
79
PHE
79
A
VAL
80
n
80
VAL
80
A
ASN
81
n
81
ASN
81
A
ASN
82
n
82
ASN
82
A
VAL
83
n
83
VAL
83
A
ILE
84
n
84
ILE
84
A
PRO
85
n
85
PRO
85
A
PRO
86
n
86
PRO
86
A
THR
87
n
87
THR
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
THR
90
n
90
THR
90
A
MET
91
n
91
MET
91
A
GLY
92
n
92
GLY
92
A
GLN
93
n
93
GLN
93
A
LEU
94
n
94
LEU
94
A
TYR
95
n
95
TYR
95
A
GLN
96
n
96
GLN
96
A
GLU
97
n
97
GLU
97
A
HIS
98
n
98
HIS
98
A
HIS
99
n
99
HIS
99
A
GLU
100
n
100
GLU
100
A
GLU
101
n
101
GLU
101
A
ASP
102
n
102
ASP
102
A
PHE
103
n
103
PHE
103
A
PHE
104
n
104
PHE
104
A
LEU
105
n
105
LEU
105
A
TYR
106
n
106
TYR
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
TYR
109
n
109
TYR
109
A
SER
110
n
110
SER
110
A
ASP
111
n
111
ASP
111
A
GLU
112
n
112
GLU
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
TYR
115
n
115
TYR
115
A
GLY
116
n
116
GLY
116
A
LEU
117
n
117
LEU
117
A
1.9740
-1.0566
0.0508
4.5831
0.9782
1.4820
0.0506
0.0993
0.0058
-0.2357
-0.0698
-0.0358
-0.0846
-0.0069
0.0192
0.0178
0.0063
-0.0110
0.0293
0.0096
0.0136
refined
25.9520
1.0260
6.9190
X-RAY DIFFRACTION
A
1
A
117
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PQS
1
monomeric
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
A
HIS
99
A
NE2
HIS
99
2_654
94.2
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2059
C
O
HOH
1_555
76.8
A
HIS
99
A
NE2
HIS
99
2_654
A
NI
200
B
NI
NI
1_555
A
HOH
2059
C
O
HOH
1_555
95.9
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2061
C
O
HOH
1_555
93.7
A
HIS
99
A
NE2
HIS
99
2_654
A
NI
200
B
NI
NI
1_555
A
HOH
2061
C
O
HOH
1_555
92.0
A
HOH
2059
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2061
C
O
HOH
1_555
168.1
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2062
C
O
HOH
1_555
89.7
A
HIS
99
A
NE2
HIS
99
2_654
A
NI
200
B
NI
NI
1_555
A
HOH
2062
C
O
HOH
1_555
174.3
A
HOH
2059
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2062
C
O
HOH
1_555
89.0
A
HOH
2061
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2062
C
O
HOH
1_555
83.6
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
164.6
A
HIS
99
A
NE2
HIS
99
2_654
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
96.8
A
HOH
2059
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
91.4
A
HOH
2061
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
96.6
A
HOH
2062
C
O
HOH
1_555
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
80.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
51
A
N
VAL
51
A
O
VAL
29
A
O
VAL
29
A
N
ILE
32
A
N
ILE
32
A
O
LEU
105
A
O
LEU
105
A
N
SER
110
A
N
SER
110
A
O
PHE
77
A
O
PHE
77
1
A
A
O
O
HOH
HOH
2002
2003
1.76
1
A
A
NZ
O
LYS
HOH
13
2011
1.85
1
A
A
O
O
ASN
HOH
81
2072
1.95
1
A
A
OE2
O
GLU
HOH
101
2091
2.00
1
A
A
OXT
O
LEU
HOH
117
2100
2.00
1
A
A
OE2
O
GLU
HOH
12
2009
2.06
1
A
A
NZ
O
LYS
HOH
23
2027
2.07
1
A
A
OD2
O
ASP
HOH
43
2045
2.08
1
A
A
NH1
O
ARG
HOH
71
2064
2.13
1
A
A
OD2
NE
ASP
ARG
45
67
2.15
1
6.04
0.90
118.30
124.34
A
A
A
CB
CG
OD2
ASP
ASP
ASP
43
43
43
N
1
-12.85
1.80
110.60
97.75
A
A
A
N
CA
CB
ASP
ASP
ASP
45
45
45
N
1
-3.92
0.50
120.30
116.38
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
65
65
65
A
A
A
N
1
3.22
0.50
120.30
123.52
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
65
65
65
A
A
A
N
1
A
ARG
40
-93.10
41.51
1
A
ASN
82
59.84
17.36
0.954
0.953
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. CONSTANT COMPONENT OF SCATTERING FACTOR FOR NI(II) SET TO -7.00 IN ATOMSF.LIB TO COMPENSATE FOR BEING NEAR THE NICKEL EDGE
0.230
0.201
0.203
1.75
41.89
533
10450
4.900
97.1
3.970
0.128
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.154
0.134
0.80
0.80
1.40
1EO6
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.75
41.89
100
1088
1
0
987
0.025
0.022
1025
0.001
0.020
934
2.107
1.963
1379
0.956
3.000
2179
0.149
0.200
143
0.011
0.020
1111
0.005
0.020
230
0.234
0.300
224
0.221
0.300
919
0.083
0.500
1
0.292
0.500
106
0.345
0.000
3
0.170
0.000
2
0.269
0.300
14
0.159
0.300
29
0.270
0.500
12
0.339
0.000
1
1.264
1.500
590
2.204
2.000
962
3.374
3.000
435
5.405
4.500
417
0.2980
0.3750
1.79
33
746
20
1.750
22.000
1GNU
11007
0.000
0.06500
1
5.3000
7.600
97.6
0.24700
1.75
1.84
2.200
1
7.20
95.1
refinement
REFMAC
5.0
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
GABA(A) receptor associated protein GABARAP
1
N
N
2
N
N
3
N
N
A
PHE
3
A
PHE
3
HELX_P
A
HIS
9
A
HIS
9
1
1
7
A
PRO
10
A
PRO
10
HELX_P
A
TYR
25
A
TYR
25
1
2
16
A
THR
56
A
THR
56
HELX_P
A
ILE
68
A
ILE
68
1
3
13
A
THR
90
A
THR
90
HELX_P
A
HIS
99
A
HIS
99
1
4
10
metalc
1.925
A
HIS
69
A
NE2
HIS
69
1_555
A
NI
200
B
NI
NI
1_555
metalc
2.086
A
HIS
99
A
NE2
HIS
99
2_654
A
NI
200
B
NI
NI
1_555
metalc
2.093
A
NI
200
B
NI
NI
1_555
A
HOH
2059
C
O
HOH
1_555
metalc
1.912
A
NI
200
B
NI
NI
1_555
A
HOH
2061
C
O
HOH
1_555
metalc
2.283
A
NI
200
B
NI
NI
1_555
A
HOH
2062
C
O
HOH
1_555
metalc
1.672
A
NI
200
B
NI
NI
1_555
A
HOH
2086
C
O
HOH
2_654
TRANSPORT
TRANSPORT, UBIQUITIN-LIKE, RECEPTOR
O95166
UNP
1
O95166
1
117
1GNU
1
117
O95166
A
1
1
117
4
anti-parallel
parallel
anti-parallel
A
LYS
48
A
LYS
48
A
PRO
52
A
PRO
52
A
ARG
28
A
ARG
28
A
LYS
35
A
LYS
35
A
LEU
105
A
LEU
105
A
SER
110
A
SER
110
A
PHE
77
A
PHE
77
A
PHE
79
A
PHE
79
BINDING SITE FOR RESIDUE NI A 200
A
NI
200
Software
6
A
HIS
69
A
HIS
69
6
1_555
A
HIS
99
A
HIS
99
6
1_555
A
HOH
2059
C
HOH
6
1_555
A
HOH
2061
C
HOH
6
1_555
A
HOH
2062
C
HOH
6
1_555
A
HOH
2086
C
HOH
6
1_555
19
P 21 21 21