0.008978
0.000000
0.000000
0.000000
0.014376
0.000000
0.000000
0.000000
0.029886
0.00000
0.00000
0.00000
Polyakov, K.M.
Lebedev, A.A.
Pavlovsky, A.G.
Sanishvili, R.G.
Dodson, G.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
111.380
69.560
33.460
C10 H14 N5 O8 P
363.221
GUANOSINE-3'-MONOPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
744
10.1107/S0907444902003207
11976484
The Structure of Substrate-Free Microbial Ribonuclease Binase and of its Complexes with 3'Gmp and Sulfate Ions
2002
NE
Trends Biochem.Sci.
TBSCDB
0946
0968-0004
15
158
10.1016/0968-0004(90)90217-Y
2160143
Comparison of Active Sites of Some Microbial Ribonucleases: Structural Basis for Guanylic Specificity
1990
UR
Kristallografiya(Russian)
KRISAJ
0041
0023-4761
34
137
The Crystall Structure of Bacterial Ribonuclease Binase
1989
NE
FEBS Lett.
FEBLAL
0165
0014-5793
162
167
10.1016/0014-5793(83)81071-0
6413257
Three-Dimensional Structure of Ribonuclese from Balillus Intermedius 7P at 3A Resolution
1983
NE
Trends Biochem.Sci.
TBSCDB
0946
0968-0004
8
364
The Structural and Sequence Homology of Family of Microbial Ribonucleases
1983
3GP A 201 HAS WRONG CHIRALITY AT ATOM C1'
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287.0
1
SYTNEX P21
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GMP)
12974.492
RIBONUCLEASE
3.1.27.3
2
nat
polymer
363.221
GUANOSINE-3'-MONOPHOSPHATE
1
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
183
nat
water
BINASE, G SPECIFIC ENDONUCLEASE
no
no
FTPVTKAAVINTFDGVADYLIRYKRLPNDYITKSQASALGWVASKGDLAEVAPGKSIGGDVFSNREGRLPSAGSRTWREA
DINYVSGFRNADRLVYSSDWLIYKTTDHYATFTRIR
FTPVTKAAVINTFDGVADYLIRYKRLPNDYITKSQASALGWVASKGDLAEVAPGKSIGGDVFSNREGRLPSAGSRTWREA
DINYVSGFRNADRLVYSSDWLIYKTTDHYATFTRIR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MICROORGANISM
sample
1400
BACILLUS INTERMEDIUS
2.50
50.75
7.00
pH 7.00
database_PDB_caveat
repository
Initial release
Version format compliance
Version format compliance
Advisory
1
0
2001-11-29
1
1
2011-05-08
1
2
2011-07-13
1
3
2017-07-12
STRUCTURE OF BINASE IN SOLUTION
STRUCTURE OF BINASE MUTANT HIS 101 ASN
STRUCTURE OF RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) UNLIGANDED FORM
STRUCTURE OF RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) COMPLEXED WITH SULFATE IONS
PDBE
Y
PDBE
2001-10-26
REL
1
A
O
HOH
386
6.88
1
A
O
HOH
387
8.02
1
B
O
HOH
395
6.21
1
B
O
HOH
396
7.51
3GP
GUANOSINE-3'-MONOPHOSPHATE
SO4
SULFATE ION
HOH
water
3GP
110
2
3GP
3GP
201
A
SO4
110
3
SO4
SO4
202
A
SO4
99
3
SO4
SO4
201
B
SO4
111
3
SO4
SO4
202
B
HOH
2045
4
HOH
HOH
301
A
HOH
2033
4
HOH
HOH
302
A
HOH
2023
4
HOH
HOH
303
A
HOH
2004
4
HOH
HOH
304
A
HOH
2012
4
HOH
HOH
305
A
HOH
2018
4
HOH
HOH
306
A
HOH
2002
4
HOH
HOH
307
A
HOH
2079
4
HOH
HOH
308
A
HOH
2021
4
HOH
HOH
309
A
HOH
2070
4
HOH
HOH
310
A
HOH
2034
4
HOH
HOH
311
A
HOH
2030
4
HOH
HOH
312
A
HOH
2041
4
HOH
HOH
313
A
HOH
2054
4
HOH
HOH
314
A
HOH
2031
4
HOH
HOH
315
A
HOH
2074
4
HOH
HOH
316
A
HOH
2056
4
HOH
HOH
317
A
HOH
2078
4
HOH
HOH
318
A
HOH
2071
4
HOH
HOH
319
A
HOH
2044
4
HOH
HOH
320
A
HOH
2016
4
HOH
HOH
321
A
HOH
2037
4
HOH
HOH
322
A
HOH
2060
4
HOH
HOH
323
A
HOH
2063
4
HOH
HOH
324
A
HOH
2066
4
HOH
HOH
325
A
HOH
2052
4
HOH
HOH
326
A
HOH
2004
4
HOH
HOH
327
A
HOH
2059
4
HOH
HOH
328
A
HOH
2072
4
HOH
HOH
329
A
HOH
2064
4
HOH
HOH
330
A
HOH
2040
4
HOH
HOH
331
A
HOH
2069
4
HOH
HOH
332
A
HOH
2032
4
HOH
HOH
333
A
HOH
2003
4
HOH
HOH
334
A
HOH
2062
4
HOH
HOH
335
A
HOH
2011
4
HOH
HOH
336
A
HOH
2038
4
HOH
HOH
337
A
HOH
2008
4
HOH
HOH
338
A
HOH
2075
4
HOH
HOH
339
A
HOH
2068
4
HOH
HOH
340
A
HOH
2020
4
HOH
HOH
341
A
HOH
2055
4
HOH
HOH
342
A
HOH
2019
4
HOH
HOH
343
A
HOH
2053
4
HOH
HOH
344
A
HOH
2035
4
HOH
HOH
345
A
HOH
2047
4
HOH
HOH
346
A
HOH
2029
4
HOH
HOH
347
A
HOH
2081
4
HOH
HOH
348
A
HOH
2026
4
HOH
HOH
349
A
HOH
2076
4
HOH
HOH
350
A
HOH
2036
4
HOH
HOH
351
A
HOH
2073
4
HOH
HOH
352
A
HOH
2082
4
HOH
HOH
353
A
HOH
2058
4
HOH
HOH
354
A
HOH
2042
4
HOH
HOH
355
A
HOH
2005
4
HOH
HOH
356
A
HOH
2039
4
HOH
HOH
357
A
HOH
2043
4
HOH
HOH
358
A
HOH
2050
4
HOH
HOH
359
A
HOH
2046
4
HOH
HOH
360
A
HOH
2001
4
HOH
HOH
361
A
HOH
2080
4
HOH
HOH
362
A
HOH
2061
4
HOH
HOH
363
A
HOH
2014
4
HOH
HOH
364
A
HOH
2083
4
HOH
HOH
365
A
HOH
2013
4
HOH
HOH
366
A
HOH
2067
4
HOH
HOH
367
A
HOH
2065
4
HOH
HOH
368
A
HOH
2057
4
HOH
HOH
369
A
HOH
2024
4
HOH
HOH
370
A
HOH
2049
4
HOH
HOH
371
A
HOH
2009
4
HOH
HOH
372
A
HOH
2048
4
HOH
HOH
373
A
HOH
2028
4
HOH
HOH
374
A
HOH
2011
4
HOH
HOH
375
A
HOH
2006
4
HOH
HOH
376
A
HOH
2025
4
HOH
HOH
377
A
HOH
2015
4
HOH
HOH
378
A
HOH
2010
4
HOH
HOH
379
A
HOH
2051
4
HOH
HOH
380
A
HOH
2034
4
HOH
HOH
381
A
HOH
2002
4
HOH
HOH
382
A
HOH
2077
4
HOH
HOH
383
A
HOH
2027
4
HOH
HOH
384
A
HOH
2022
4
HOH
HOH
385
A
HOH
2007
4
HOH
HOH
386
A
HOH
2003
4
HOH
HOH
387
A
HOH
2078
4
HOH
HOH
301
B
HOH
2004
4
HOH
HOH
302
B
HOH
2007
4
HOH
HOH
303
B
HOH
2093
4
HOH
HOH
304
B
HOH
2050
4
HOH
HOH
305
B
HOH
2095
4
HOH
HOH
306
B
HOH
2049
4
HOH
HOH
307
B
HOH
2005
4
HOH
HOH
308
B
HOH
2080
4
HOH
HOH
309
B
HOH
2082
4
HOH
HOH
310
B
HOH
2061
4
HOH
HOH
311
B
HOH
2033
4
HOH
HOH
312
B
HOH
2048
4
HOH
HOH
313
B
HOH
2067
4
HOH
HOH
314
B
HOH
2084
4
HOH
HOH
315
B
HOH
2040
4
HOH
HOH
316
B
HOH
2074
4
HOH
HOH
317
B
HOH
2068
4
HOH
HOH
318
B
HOH
2058
4
HOH
HOH
319
B
HOH
2025
4
HOH
HOH
320
B
HOH
2075
4
HOH
HOH
321
B
HOH
2059
4
HOH
HOH
322
B
HOH
2027
4
HOH
HOH
323
B
HOH
2029
4
HOH
HOH
324
B
HOH
2077
4
HOH
HOH
325
B
HOH
2086
4
HOH
HOH
326
B
HOH
2023
4
HOH
HOH
327
B
HOH
2054
4
HOH
HOH
328
B
HOH
2088
4
HOH
HOH
329
B
HOH
2024
4
HOH
HOH
330
B
HOH
2036
4
HOH
HOH
331
B
HOH
2092
4
HOH
HOH
332
B
HOH
2020
4
HOH
HOH
333
B
HOH
2051
4
HOH
HOH
334
B
HOH
2073
4
HOH
HOH
335
B
HOH
2072
4
HOH
HOH
336
B
HOH
2071
4
HOH
HOH
337
B
HOH
2052
4
HOH
HOH
338
B
HOH
2045
4
HOH
HOH
339
B
HOH
2014
4
HOH
HOH
340
B
HOH
2076
4
HOH
HOH
341
B
HOH
2060
4
HOH
HOH
342
B
HOH
2032
4
HOH
HOH
343
B
HOH
2008
4
HOH
HOH
344
B
HOH
2081
4
HOH
HOH
345
B
HOH
2087
4
HOH
HOH
346
B
HOH
2055
4
HOH
HOH
347
B
HOH
2085
4
HOH
HOH
348
B
HOH
2069
4
HOH
HOH
349
B
HOH
2009
4
HOH
HOH
350
B
HOH
2056
4
HOH
HOH
351
B
HOH
2031
4
HOH
HOH
352
B
HOH
2065
4
HOH
HOH
353
B
HOH
2037
4
HOH
HOH
354
B
HOH
2028
4
HOH
HOH
355
B
HOH
2021
4
HOH
HOH
356
B
HOH
2089
4
HOH
HOH
357
B
HOH
2035
4
HOH
HOH
358
B
HOH
2006
4
HOH
HOH
359
B
HOH
2053
4
HOH
HOH
360
B
HOH
2044
4
HOH
HOH
361
B
HOH
2001
4
HOH
HOH
362
B
HOH
2005
4
HOH
HOH
363
B
HOH
2090
4
HOH
HOH
364
B
HOH
2013
4
HOH
HOH
365
B
HOH
2079
4
HOH
HOH
366
B
HOH
2091
4
HOH
HOH
367
B
HOH
2047
4
HOH
HOH
368
B
HOH
2062
4
HOH
HOH
369
B
HOH
2022
4
HOH
HOH
370
B
HOH
2083
4
HOH
HOH
371
B
HOH
2003
4
HOH
HOH
372
B
HOH
2070
4
HOH
HOH
373
B
HOH
2019
4
HOH
HOH
374
B
HOH
2094
4
HOH
HOH
375
B
HOH
2038
4
HOH
HOH
376
B
HOH
2030
4
HOH
HOH
377
B
HOH
2063
4
HOH
HOH
378
B
HOH
2001
4
HOH
HOH
379
B
HOH
2017
4
HOH
HOH
380
B
HOH
2057
4
HOH
HOH
381
B
HOH
2012
4
HOH
HOH
382
B
HOH
2066
4
HOH
HOH
383
B
HOH
2041
4
HOH
HOH
384
B
HOH
2016
4
HOH
HOH
385
B
HOH
2064
4
HOH
HOH
386
B
HOH
2002
4
HOH
HOH
387
B
HOH
2018
4
HOH
HOH
388
B
HOH
2046
4
HOH
HOH
389
B
HOH
2026
4
HOH
HOH
390
B
HOH
2015
4
HOH
HOH
391
B
HOH
2043
4
HOH
HOH
392
B
HOH
2010
4
HOH
HOH
393
B
HOH
2039
4
HOH
HOH
394
B
HOH
2017
4
HOH
HOH
395
B
HOH
2042
4
HOH
HOH
396
B
n
1
-7
A
n
2
-6
A
n
3
-5
A
n
4
-4
A
n
5
-3
A
n
6
-2
A
n
7
-1
A
n
8
1
A
VAL
2
n
9
VAL
2
A
ILE
3
n
10
ILE
3
A
ASN
4
n
11
ASN
4
A
THR
5
n
12
THR
5
A
PHE
6
n
13
PHE
6
A
ASP
7
n
14
ASP
7
A
GLY
8
n
15
GLY
8
A
VAL
9
n
16
VAL
9
A
ALA
10
n
17
ALA
10
A
ASP
11
n
18
ASP
11
A
TYR
12
n
19
TYR
12
A
LEU
13
n
20
LEU
13
A
ILE
14
n
21
ILE
14
A
ARG
15
n
22
ARG
15
A
TYR
16
n
23
TYR
16
A
LYS
17
n
24
LYS
17
A
ARG
18
n
25
ARG
18
A
LEU
19
n
26
LEU
19
A
PRO
20
n
27
PRO
20
A
ASN
21
n
28
ASN
21
A
ASP
22
n
29
ASP
22
A
TYR
23
n
30
TYR
23
A
ILE
24
n
31
ILE
24
A
THR
25
n
32
THR
25
A
LYS
26
n
33
LYS
26
A
SER
27
n
34
SER
27
A
GLN
28
n
35
GLN
28
A
ALA
29
n
36
ALA
29
A
SER
30
n
37
SER
30
A
ALA
31
n
38
ALA
31
A
LEU
32
n
39
LEU
32
A
GLY
33
n
40
GLY
33
A
TRP
34
n
41
TRP
34
A
VAL
35
n
42
VAL
35
A
ALA
36
n
43
ALA
36
A
SER
37
n
44
SER
37
A
LYS
38
n
45
LYS
38
A
GLY
39
n
46
GLY
39
A
ASP
40
n
47
ASP
40
A
LEU
41
n
48
LEU
41
A
ALA
42
n
49
ALA
42
A
GLU
43
n
50
GLU
43
A
VAL
44
n
51
VAL
44
A
ALA
45
n
52
ALA
45
A
PRO
46
n
53
PRO
46
A
GLY
47
n
54
GLY
47
A
LYS
48
n
55
LYS
48
A
SER
49
n
56
SER
49
A
ILE
50
n
57
ILE
50
A
GLY
51
n
58
GLY
51
A
GLY
52
n
59
GLY
52
A
ASP
53
n
60
ASP
53
A
VAL
54
n
61
VAL
54
A
PHE
55
n
62
PHE
55
A
SER
56
n
63
SER
56
A
ASN
57
n
64
ASN
57
A
ARG
58
n
65
ARG
58
A
GLU
59
n
66
GLU
59
A
GLY
60
n
67
GLY
60
A
ARG
61
n
68
ARG
61
A
LEU
62
n
69
LEU
62
A
PRO
63
n
70
PRO
63
A
SER
64
n
71
SER
64
A
ALA
65
n
72
ALA
65
A
GLY
66
n
73
GLY
66
A
SER
67
n
74
SER
67
A
ARG
68
n
75
ARG
68
A
THR
69
n
76
THR
69
A
TRP
70
n
77
TRP
70
A
ARG
71
n
78
ARG
71
A
GLU
72
n
79
GLU
72
A
ALA
73
n
80
ALA
73
A
ASP
74
n
81
ASP
74
A
ILE
75
n
82
ILE
75
A
ASN
76
n
83
ASN
76
A
TYR
77
n
84
TYR
77
A
VAL
78
n
85
VAL
78
A
SER
79
n
86
SER
79
A
GLY
80
n
87
GLY
80
A
PHE
81
n
88
PHE
81
A
ARG
82
n
89
ARG
82
A
ASN
83
n
90
ASN
83
A
ALA
84
n
91
ALA
84
A
ASP
85
n
92
ASP
85
A
ARG
86
n
93
ARG
86
A
LEU
87
n
94
LEU
87
A
VAL
88
n
95
VAL
88
A
TYR
89
n
96
TYR
89
A
SER
90
n
97
SER
90
A
SER
91
n
98
SER
91
A
ASP
92
n
99
ASP
92
A
TRP
93
n
100
TRP
93
A
LEU
94
n
101
LEU
94
A
ILE
95
n
102
ILE
95
A
TYR
96
n
103
TYR
96
A
LYS
97
n
104
LYS
97
A
THR
98
n
105
THR
98
A
THR
99
n
106
THR
99
A
ASP
100
n
107
ASP
100
A
HIS
101
n
108
HIS
101
A
TYR
102
n
109
TYR
102
A
ALA
103
n
110
ALA
103
A
THR
104
n
111
THR
104
A
PHE
105
n
112
PHE
105
A
THR
106
n
113
THR
106
A
ARG
107
n
114
ARG
107
A
ILE
108
n
115
ILE
108
A
ARG
109
n
116
ARG
109
A
n
1
-7
B
n
2
-6
B
n
3
-5
B
n
4
-4
B
n
5
-3
B
n
6
-2
B
n
7
-1
B
n
8
1
B
VAL
2
n
9
VAL
2
B
ILE
3
n
10
ILE
3
B
ASN
4
n
11
ASN
4
B
THR
5
n
12
THR
5
B
PHE
6
n
13
PHE
6
B
ASP
7
n
14
ASP
7
B
GLY
8
n
15
GLY
8
B
VAL
9
n
16
VAL
9
B
ALA
10
n
17
ALA
10
B
ASP
11
n
18
ASP
11
B
TYR
12
n
19
TYR
12
B
LEU
13
n
20
LEU
13
B
ILE
14
n
21
ILE
14
B
ARG
15
n
22
ARG
15
B
TYR
16
n
23
TYR
16
B
LYS
17
n
24
LYS
17
B
ARG
18
n
25
ARG
18
B
LEU
19
n
26
LEU
19
B
PRO
20
n
27
PRO
20
B
ASN
21
n
28
ASN
21
B
ASP
22
n
29
ASP
22
B
TYR
23
n
30
TYR
23
B
ILE
24
n
31
ILE
24
B
THR
25
n
32
THR
25
B
LYS
26
n
33
LYS
26
B
SER
27
n
34
SER
27
B
GLN
28
n
35
GLN
28
B
ALA
29
n
36
ALA
29
B
SER
30
n
37
SER
30
B
ALA
31
n
38
ALA
31
B
LEU
32
n
39
LEU
32
B
GLY
33
n
40
GLY
33
B
TRP
34
n
41
TRP
34
B
VAL
35
n
42
VAL
35
B
ALA
36
n
43
ALA
36
B
SER
37
n
44
SER
37
B
LYS
38
n
45
LYS
38
B
GLY
39
n
46
GLY
39
B
ASP
40
n
47
ASP
40
B
LEU
41
n
48
LEU
41
B
ALA
42
n
49
ALA
42
B
GLU
43
n
50
GLU
43
B
VAL
44
n
51
VAL
44
B
ALA
45
n
52
ALA
45
B
PRO
46
n
53
PRO
46
B
GLY
47
n
54
GLY
47
B
LYS
48
n
55
LYS
48
B
SER
49
n
56
SER
49
B
ILE
50
n
57
ILE
50
B
GLY
51
n
58
GLY
51
B
GLY
52
n
59
GLY
52
B
ASP
53
n
60
ASP
53
B
VAL
54
n
61
VAL
54
B
PHE
55
n
62
PHE
55
B
SER
56
n
63
SER
56
B
ASN
57
n
64
ASN
57
B
ARG
58
n
65
ARG
58
B
GLU
59
n
66
GLU
59
B
GLY
60
n
67
GLY
60
B
ARG
61
n
68
ARG
61
B
LEU
62
n
69
LEU
62
B
PRO
63
n
70
PRO
63
B
SER
64
n
71
SER
64
B
ALA
65
n
72
ALA
65
B
GLY
66
n
73
GLY
66
B
SER
67
n
74
SER
67
B
ARG
68
n
75
ARG
68
B
THR
69
n
76
THR
69
B
TRP
70
n
77
TRP
70
B
ARG
71
n
78
ARG
71
B
GLU
72
n
79
GLU
72
B
ALA
73
n
80
ALA
73
B
ASP
74
n
81
ASP
74
B
ILE
75
n
82
ILE
75
B
ASN
76
n
83
ASN
76
B
TYR
77
n
84
TYR
77
B
VAL
78
n
85
VAL
78
B
SER
79
n
86
SER
79
B
GLY
80
n
87
GLY
80
B
PHE
81
n
88
PHE
81
B
ARG
82
n
89
ARG
82
B
ASN
83
n
90
ASN
83
B
ALA
84
n
91
ALA
84
B
ASP
85
n
92
ASP
85
B
ARG
86
n
93
ARG
86
B
LEU
87
n
94
LEU
87
B
VAL
88
n
95
VAL
88
B
TYR
89
n
96
TYR
89
B
SER
90
n
97
SER
90
B
SER
91
n
98
SER
91
B
ASP
92
n
99
ASP
92
B
TRP
93
n
100
TRP
93
B
LEU
94
n
101
LEU
94
B
ILE
95
n
102
ILE
95
B
TYR
96
n
103
TYR
96
B
LYS
97
n
104
LYS
97
B
THR
98
n
105
THR
98
B
THR
99
n
106
THR
99
B
ASP
100
n
107
ASP
100
B
HIS
101
n
108
HIS
101
B
TYR
102
n
109
TYR
102
B
ALA
103
n
110
ALA
103
B
THR
104
n
111
THR
104
B
PHE
105
n
112
PHE
105
B
THR
106
n
113
THR
106
B
ARG
107
n
114
ARG
107
B
ILE
108
n
115
ILE
108
B
ARG
109
n
116
ARG
109
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
24
A
N
ILE
31
A
O
SER
49
A
O
SER
56
A
N
PHE
55
A
N
PHE
62
A
O
TRP
70
A
O
TRP
77
A
N
ALA
73
A
N
ALA
80
A
O
LEU
87
A
O
LEU
94
A
N
VAL
88
A
N
VAL
95
A
O
TYR
96
A
O
TYR
103
A
N
LYS
97
A
N
LYS
104
A
O
THR
106
A
O
THR
113
B
N
ILE
24
B
N
ILE
31
B
O
SER
49
B
O
SER
56
B
N
PHE
55
B
N
PHE
62
B
O
TRP
70
B
O
TRP
77
B
N
ALA
73
B
N
ALA
80
B
O
LEU
87
B
O
LEU
94
B
N
VAL
88
B
N
VAL
95
B
O
TYR
96
B
O
TYR
103
B
N
LYS
97
B
N
LYS
104
B
O
THR
106
B
O
THR
113
1
A
CB
SER
67
A
CB
SER
74
1
Y
1
A
OG
SER
67
A
OG
SER
74
1
Y
1
B
CB
SER
67
B
CB
SER
74
1
Y
1
B
OG
SER
67
B
OG
SER
74
1
Y
1
A
PHE
-7
A
PHE
1
1
Y
1
A
THR
-6
A
THR
2
1
Y
1
A
PRO
-5
A
PRO
3
1
Y
1
A
VAL
-4
A
VAL
4
1
Y
1
A
THR
-3
A
THR
5
1
Y
1
A
LYS
-2
A
LYS
6
1
Y
1
A
ALA
-1
A
ALA
7
1
Y
1
A
ALA
1
A
ALA
8
1
Y
1
B
PHE
-7
B
PHE
1
1
Y
1
B
THR
-6
B
THR
2
1
Y
1
B
PRO
-5
B
PRO
3
1
Y
1
B
VAL
-4
B
VAL
4
1
Y
1
B
THR
-3
B
THR
5
1
Y
1
B
LYS
-2
B
LYS
6
1
Y
1
B
ALA
-1
B
ALA
7
1
Y
1
B
ALA
1
B
ALA
8
1
Y
1
A
C1'
3GP
201
PLANAR
1
6.44
0.90
118.30
124.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
7
7
7
N
1
4.79
0.50
120.30
125.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
15
15
15
N
1
4.80
0.50
120.30
125.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
18
18
18
N
1
-3.08
0.50
120.30
117.22
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
18
18
18
N
1
5.87
0.90
118.30
124.17
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
8.65
0.90
118.30
126.95
A
A
A
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
3.41
0.50
120.30
123.71
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
109
109
109
N
1
3.08
0.50
120.30
123.38
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
18
18
18
N
1
7.45
0.90
118.30
125.75
B
B
B
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
7.44
0.90
118.30
125.74
B
B
B
CB
CG
OD2
ASP
ASP
ASP
100
100
100
N
1
A
ASN
4
-141.93
21.54
1
A
SER
37
108.61
-18.94
1
A
SER
67
87.47
-12.84
1
A
VAL
78
-130.94
-61.71
1
B
ASN
4
-146.25
14.53
1
B
SER
67
80.69
-14.41
1
B
ASN
83
-95.20
-156.75
0.951
NONE
0.184
2.00
10.00
0.000
3.682
0.095
RANDOM
1
THROUGHOUT
MIR
0.192
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL PLUS MASK
2.00
10.00
183
1940
39
0
1718
1.014
1.500
1066
1.783
2.000
1706
2.681
3.000
743
4.176
4.500
749
0.3360
2.05
0
437
20
2.000
10.000
1GOY
14982
1
2.000
99.0
phasing
BLANC
phasing
CCP4
refinement
REFMAC
5.1.00
RIBONUCLEASE (E.C.3.1.27.3)
HYDROLASE(ENDORIBONUCLEASE)RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GMP)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
5
A
THR
12
HELX_P
A
LYS
17
A
LYS
24
1
1
13
A
THR
25
A
THR
32
HELX_P
A
LEU
32
A
LEU
39
1
2
8
A
ASP
40
A
ASP
47
HELX_P
A
ALA
45
A
ALA
52
1
3
6
B
THR
5
B
THR
12
HELX_P
B
LYS
17
B
LYS
24
1
4
13
B
THR
25
B
THR
32
HELX_P
B
LEU
32
B
LEU
39
1
5
8
B
ASP
40
B
ASP
47
HELX_P
B
ALA
45
B
ALA
52
1
6
6
HYDROLASE
HYDROLASE, ENDORIBONUCLEASE, NUCLEASE
1GOY
PDB
1
1GOY
RN_BACIN
UNP
1
P00649
-7
-1
1GOY
-7
-1
1GOY
A
1
1
7
54
162
1GOY
1
109
P00649
A
2
8
116
-7
-1
1GOY
-7
-1
1GOY
B
1
1
7
54
162
1GOY
1
109
P00649
B
2
8
116
1
ASP
conflict
ASN
21
1GOY
A
P00649
UNP
74
28
1
ASN
conflict
ASP
22
1GOY
A
P00649
UNP
75
29
1
ASN
conflict
ASP
40
1GOY
A
P00649
UNP
93
47
1
SER
conflict
GLY
66
1GOY
A
P00649
UNP
119
73
1
GLY
conflict
SER
67
1GOY
A
P00649
UNP
120
74
3
ASP
conflict
ASN
21
1GOY
B
P00649
UNP
74
28
3
ASN
conflict
ASP
22
1GOY
B
P00649
UNP
75
29
3
ASN
conflict
ASP
40
1GOY
B
P00649
UNP
93
47
3
SER
conflict
GLY
66
1GOY
B
P00649
UNP
119
73
3
GLY
conflict
SER
67
1GOY
B
P00649
UNP
120
74
6
6
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
23
A
TYR
30
A
ILE
24
A
ILE
31
A
SER
49
A
SER
56
A
PHE
55
A
PHE
62
A
TRP
70
A
TRP
77
A
ASP
74
A
ASP
81
A
ARG
86
A
ARG
93
A
SER
90
A
SER
97
A
ILE
95
A
ILE
102
A
THR
98
A
THR
105
A
THR
106
A
THR
113
A
ARG
107
A
ARG
114
B
TYR
23
B
TYR
30
B
ILE
24
B
ILE
31
B
SER
49
B
SER
56
B
PHE
55
B
PHE
62
B
TRP
70
B
TRP
77
B
ASP
74
B
ASP
81
B
ARG
86
B
ARG
93
B
SER
90
B
SER
97
B
ILE
95
B
ILE
102
B
THR
98
B
THR
105
B
THR
106
B
THR
113
B
ARG
109
B
ARG
116
BINDING SITE FOR RESIDUE SO4 W 99
Software
6
BINDING SITE FOR RESIDUE SO4 W 110
Software
10
BINDING SITE FOR RESIDUE SO4 W 111
Software
7
BINDING SITE FOR RESIDUE 3GP A 110
Software
12
B
LYS
26
B
LYS
33
6
1_555
B
GLU
72
B
GLU
79
6
1_555
B
ARG
82
B
ARG
89
6
1_555
B
ARG
86
B
ARG
93
6
1_555
B
HIS
101
B
HIS
108
6
1_555
B
TYR
102
B
TYR
109
6
1_555
A
TRP
34
A
TRP
41
10
1_555
A
ALA
36
A
ALA
43
10
1_555
A
SER
37
A
SER
44
10
1_555
A
LYS
38
A
LYS
45
10
1_555
A
GLY
39
A
GLY
46
10
1_555
A
PHE
81
A
PHE
88
10
1_555
A
ARG
82
A
ARG
89
10
1_555
A
HOH
307
G
HOH
10
1_555
A
HOH
334
G
HOH
10
1_555
A
HOH
304
G
HOH
10
1_555
B
TRP
34
B
TRP
41
7
1_555
B
ALA
36
B
ALA
43
7
1_555
B
GLY
39
B
GLY
46
7
1_555
B
PHE
81
B
PHE
88
7
1_555
B
ARG
82
B
ARG
89
7
1_555
B
HOH
321
H
HOH
7
1_555
B
HOH
308
H
HOH
7
1_555
A
LYS
26
A
LYS
33
12
1_555
A
VAL
54
A
VAL
61
12
1_555
A
PHE
55
A
PHE
62
12
1_555
A
SER
56
A
SER
63
12
1_555
A
ASN
57
A
ASN
64
12
1_555
A
ARG
58
A
ARG
65
12
1_555
A
GLU
59
A
GLU
66
12
1_555
A
GLU
72
A
GLU
79
12
1_555
A
ARG
82
A
ARG
89
12
1_555
A
ARG
86
A
ARG
93
12
1_555
A
HIS
101
A
HIS
108
12
1_555
A
TYR
102
A
TYR
109
12
1_555
19
P 21 21 21