0.021896
0.000000
0.004802
0.000000
0.007556
0.000000
0.000000
0.000000
0.021369
0.00000
0.00000
0.00000
Jelakovic, S.
Schulz, G.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
102.37
90.00
45.671
132.349
47.908
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H16 N3 O14 P3
483.156
CYTIDINE-5'-TRIPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
N
C
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
R
C
N
83
R
C
N
84
N
O
N
85
S
C
N
86
R
C
N
87
N
O
N
88
N
O
N
89
N
C
N
90
N
O
N
91
S
P
N
92
N
O
N
93
N
O
N
94
N
O
N
95
R
P
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
P
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
R
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
S
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
MG
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
Y
186
N
sing
Y
187
N
doub
Y
188
N
doub
N
189
N
sing
Y
190
N
sing
N
191
N
sing
Y
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
41
1174
10.1021/BI0119060
11802716
Catalytic Mechanism of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase as Derived from Complexes with Reaction Educt and Product.
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
312
143
10.1006/JMBI.2001.4948
11545592
The Structure of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase and of its Complexes with Substrates and Substrate Analogs
2001
NE
FEBS Lett.
FEBLAL
0165
0014-5793
391
157
10.1016/0014-5793(96)00724-7
8706906
The Three-Dimensional Structure of Capsule-Specific Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase from Escherichia Coli
1996
10.2210/pdb1gq9/pdb
pdb_00001gq9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
27059.912
3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE
2.7.7.38
2
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
483.156
CYTIDINE-5'-TRIPHOSPHATE
2
syn
non-polymer
18.015
water
190
nat
water
CMP-KDO SYNTHETASE, CMP-2-KETO-3-DEOXYOCTULOSONIC ACID SYNTHETASE, CKS
no
no
SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL
VEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPY
PRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE
LAENA
SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL
VEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPY
PRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE
LAENA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K5
sample
562
ESCHERICHIA COLI
562
ESCHERICHIA COLI
2.61
52.93
9.40
pH 9.40
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
2002-02-11
1
1
2011-05-08
1
2
2011-07-13
1
3
2024-05-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
CTP:GLYCEROL-3-PHOSPHATE CYTIDYLYLTRANSFERASE FROM BACILLUS SUBTILIS
NMR STRUCTURE OF THE MEMBRANE-BINDING DOMAIN OF CTP PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE, 10 STRUCTURES
NMR STRUCTURE OF THE MEMBRANE-BINDING DOMAIN OF CTP PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE, 10 STRUCTURES
THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE COMPLEXED WITH CMP-KDO AT 100K
PDBE
Y
PDBE
2001-11-21
REL
REL
MG
MAGNESIUM ION
CTP
CYTIDINE-5'-TRIPHOSPHATE
HOH
water
MG
1242
2
MG
MG
1242
A
CTP
1243
3
CTP
CTP
1243
A
MG
1242
2
MG
MG
1242
B
CTP
1243
3
CTP
CTP
1243
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
HOH
2072
4
HOH
HOH
2072
B
HOH
2073
4
HOH
HOH
2073
B
HOH
2074
4
HOH
HOH
2074
B
HOH
2075
4
HOH
HOH
2075
B
HOH
2076
4
HOH
HOH
2076
B
HOH
2077
4
HOH
HOH
2077
B
HOH
2078
4
HOH
HOH
2078
B
HOH
2079
4
HOH
HOH
2079
B
HOH
2080
4
HOH
HOH
2080
B
HOH
2081
4
HOH
HOH
2081
B
HOH
2082
4
HOH
HOH
2082
B
HOH
2083
4
HOH
HOH
2083
B
HOH
2084
4
HOH
HOH
2084
B
HOH
2085
4
HOH
HOH
2085
B
HOH
2086
4
HOH
HOH
2086
B
HOH
2087
4
HOH
HOH
2087
B
HOH
2088
4
HOH
HOH
2088
B
HOH
2089
4
HOH
HOH
2089
B
HOH
2090
4
HOH
HOH
2090
B
HOH
2091
4
HOH
HOH
2091
B
HOH
2092
4
HOH
HOH
2092
B
HOH
2093
4
HOH
HOH
2093
B
HOH
2094
4
HOH
HOH
2094
B
HOH
2095
4
HOH
HOH
2095
B
HOH
2096
4
HOH
HOH
2096
B
HOH
2097
4
HOH
HOH
2097
B
HOH
2098
4
HOH
HOH
2098
B
HOH
2099
4
HOH
HOH
2099
B
HOH
2100
4
HOH
HOH
2100
B
HOH
2101
4
HOH
HOH
2101
B
HOH
2102
4
HOH
HOH
2102
B
HOH
2103
4
HOH
HOH
2103
B
HOH
2104
4
HOH
HOH
2104
B
HOH
2105
4
HOH
HOH
2105
B
HOH
2106
4
HOH
HOH
2106
B
SER
1
n
1
SER
1
A
LYS
2
n
2
LYS
2
A
ALA
3
n
3
ALA
3
A
VAL
4
n
4
VAL
4
A
ILE
5
n
5
ILE
5
A
VAL
6
n
6
VAL
6
A
ILE
7
n
7
ILE
7
A
PRO
8
n
8
PRO
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
TYR
11
n
11
TYR
11
A
GLY
12
n
12
GLY
12
A
SER
13
n
13
SER
13
A
SER
14
n
14
SER
14
A
ARG
15
n
15
ARG
15
A
LEU
16
n
16
LEU
16
A
PRO
17
n
17
PRO
17
A
GLY
18
n
18
GLY
18
A
LYS
19
n
19
LYS
19
A
PRO
20
n
20
PRO
20
A
LEU
21
n
21
LEU
21
A
LEU
22
n
22
LEU
22
A
ASP
23
n
23
ASP
23
A
ILE
24
n
24
ILE
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
LYS
27
n
27
LYS
27
A
PRO
28
n
28
PRO
28
A
MET
29
n
29
MET
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
HIS
32
n
32
HIS
32
A
VAL
33
n
33
VAL
33
A
TYR
34
n
34
TYR
34
A
GLU
35
n
35
GLU
35
A
ARG
36
n
36
ARG
36
A
ALA
37
n
37
ALA
37
A
LEU
38
n
38
LEU
38
A
GLN
39
n
39
GLN
39
A
VAL
40
n
40
VAL
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
GLU
45
n
45
GLU
45
A
VAL
46
n
46
VAL
46
A
TRP
47
n
47
TRP
47
A
VAL
48
n
48
VAL
48
A
ALA
49
n
49
ALA
49
A
THR
50
n
50
THR
50
A
ASP
51
n
51
ASP
51
A
ASP
52
n
52
ASP
52
A
PRO
53
n
53
PRO
53
A
ARG
54
n
54
ARG
54
A
VAL
55
n
55
VAL
55
A
GLU
56
n
56
GLU
56
A
GLN
57
n
57
GLN
57
A
ALA
58
n
58
ALA
58
A
VAL
59
n
59
VAL
59
A
GLN
60
n
60
GLN
60
A
ALA
61
n
61
ALA
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
GLY
64
n
64
GLY
64
A
LYS
65
n
65
LYS
65
A
ALA
66
n
66
ALA
66
A
ILE
67
n
67
ILE
67
A
MET
68
n
68
MET
68
A
THR
69
n
69
THR
69
A
ARG
70
n
70
ARG
70
A
ASN
71
n
71
ASN
71
A
ASP
72
n
72
ASP
72
A
HIS
73
n
73
HIS
73
A
GLU
74
n
74
GLU
74
A
SER
75
n
75
SER
75
A
GLY
76
n
76
GLY
76
A
THR
77
n
77
THR
77
A
ASP
78
n
78
ASP
78
A
ARG
79
n
79
ARG
79
A
LEU
80
n
80
LEU
80
A
VAL
81
n
81
VAL
81
A
GLU
82
n
82
GLU
82
A
VAL
83
n
83
VAL
83
A
MET
84
n
84
MET
84
A
HIS
85
n
85
HIS
85
A
LYS
86
n
86
LYS
86
A
VAL
87
n
87
VAL
87
A
GLU
88
n
88
GLU
88
A
ALA
89
n
89
ALA
89
A
ASP
90
n
90
ASP
90
A
ILE
91
n
91
ILE
91
A
TYR
92
n
92
TYR
92
A
ILE
93
n
93
ILE
93
A
ASN
94
n
94
ASN
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
GLY
97
n
97
GLY
97
A
ASP
98
n
98
ASP
98
A
GLU
99
n
99
GLU
99
A
PRO
100
n
100
PRO
100
A
MET
101
n
101
MET
101
A
ILE
102
n
102
ILE
102
A
ARG
103
n
103
ARG
103
A
PRO
104
n
104
PRO
104
A
ARG
105
n
105
ARG
105
A
ASP
106
n
106
ASP
106
A
VAL
107
n
107
VAL
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
GLN
112
n
112
GLN
112
A
GLY
113
n
113
GLY
113
A
MET
114
n
114
MET
114
A
ARG
115
n
115
ARG
115
A
ASP
116
n
116
ASP
116
A
ASP
117
n
117
ASP
117
A
PRO
118
n
118
PRO
118
A
ALA
119
n
119
ALA
119
A
LEU
120
n
120
LEU
120
A
PRO
121
n
121
PRO
121
A
VAL
122
n
122
VAL
122
A
ALA
123
n
123
ALA
123
A
THR
124
n
124
THR
124
A
LEU
125
n
125
LEU
125
A
CYS
126
n
126
CYS
126
A
HIS
127
n
127
HIS
127
A
ALA
128
n
128
ALA
128
A
ILE
129
n
129
ILE
129
A
SER
130
n
130
SER
130
A
ALA
131
n
131
ALA
131
A
ALA
132
n
132
ALA
132
A
GLU
133
n
133
GLU
133
A
ALA
134
n
134
ALA
134
A
ALA
135
n
135
ALA
135
A
GLU
136
n
136
GLU
136
A
PRO
137
n
137
PRO
137
A
SER
138
n
138
SER
138
A
THR
139
n
139
THR
139
A
VAL
140
n
140
VAL
140
A
LYS
141
n
141
LYS
141
A
VAL
142
n
142
VAL
142
A
VAL
143
n
143
VAL
143
A
VAL
144
n
144
VAL
144
A
ASN
145
n
145
ASN
145
A
THR
146
n
146
THR
146
A
ARG
147
n
147
ARG
147
A
GLN
148
n
148
GLN
148
A
ASP
149
n
149
ASP
149
A
ALA
150
n
150
ALA
150
A
LEU
151
n
151
LEU
151
A
TYR
152
n
152
TYR
152
A
PHE
153
n
153
PHE
153
A
SER
154
n
154
SER
154
A
ARG
155
n
155
ARG
155
A
SER
156
n
156
SER
156
A
PRO
157
n
157
PRO
157
A
ILE
158
n
158
ILE
158
A
PRO
159
n
159
PRO
159
A
TYR
160
n
160
TYR
160
A
PRO
161
n
161
PRO
161
A
ARG
162
n
162
ARG
162
A
ASN
163
n
163
ASN
163
A
ALA
164
n
164
ALA
164
A
GLU
165
n
165
GLU
165
A
LYS
166
n
166
LYS
166
A
ALA
167
n
167
ALA
167
A
ARG
168
n
168
ARG
168
A
TYR
169
n
169
TYR
169
A
LEU
170
n
170
LEU
170
A
LYS
171
n
171
LYS
171
A
HIS
172
n
172
HIS
172
A
VAL
173
n
173
VAL
173
A
GLY
174
n
174
GLY
174
A
ILE
175
n
175
ILE
175
A
TYR
176
n
176
TYR
176
A
ALA
177
n
177
ALA
177
A
TYR
178
n
178
TYR
178
A
ARG
179
n
179
ARG
179
A
ARG
180
n
180
ARG
180
A
ASP
181
n
181
ASP
181
A
VAL
182
n
182
VAL
182
A
LEU
183
n
183
LEU
183
A
GLN
184
n
184
GLN
184
A
ASN
185
n
185
ASN
185
A
TYR
186
n
186
TYR
186
A
SER
187
n
187
SER
187
A
GLN
188
n
188
GLN
188
A
LEU
189
n
189
LEU
189
A
PRO
190
n
190
PRO
190
A
GLU
191
n
191
GLU
191
A
SER
192
n
192
SER
192
A
MET
193
n
193
MET
193
A
PRO
194
n
194
PRO
194
A
GLU
195
n
195
GLU
195
A
GLN
196
n
196
GLN
196
A
ALA
197
n
197
ALA
197
A
GLU
198
n
198
GLU
198
A
SER
199
n
199
SER
199
A
LEU
200
n
200
LEU
200
A
GLU
201
n
201
GLU
201
A
GLN
202
n
202
GLN
202
A
LEU
203
n
203
LEU
203
A
ARG
204
n
204
ARG
204
A
LEU
205
n
205
LEU
205
A
MET
206
n
206
MET
206
A
ASN
207
n
207
ASN
207
A
ALA
208
n
208
ALA
208
A
GLY
209
n
209
GLY
209
A
ILE
210
n
210
ILE
210
A
ASN
211
n
211
ASN
211
A
ILE
212
n
212
ILE
212
A
ARG
213
n
213
ARG
213
A
THR
214
n
214
THR
214
A
PHE
215
n
215
PHE
215
A
GLU
216
n
216
GLU
216
A
VAL
217
n
217
VAL
217
A
ALA
218
n
218
ALA
218
A
ALA
219
n
219
ALA
219
A
THR
220
n
220
THR
220
A
GLY
221
n
221
GLY
221
A
PRO
222
n
222
PRO
222
A
GLY
223
n
223
GLY
223
A
VAL
224
n
224
VAL
224
A
ASP
225
n
225
ASP
225
A
THR
226
n
226
THR
226
A
PRO
227
n
227
PRO
227
A
ALA
228
n
228
ALA
228
A
CYS
229
n
229
CYS
229
A
LEU
230
n
230
LEU
230
A
GLU
231
n
231
GLU
231
A
LYS
232
n
232
LYS
232
A
VAL
233
n
233
VAL
233
A
ARG
234
n
234
ARG
234
A
ALA
235
n
235
ALA
235
A
LEU
236
n
236
LEU
236
A
MET
237
n
237
MET
237
A
ALA
238
n
238
ALA
238
A
GLN
239
n
239
GLN
239
A
GLU
240
n
240
GLU
240
A
LEU
241
n
241
LEU
241
A
n
242
242
A
n
243
243
A
n
244
244
A
n
245
245
A
SER
1
n
1
SER
1
B
LYS
2
n
2
LYS
2
B
ALA
3
n
3
ALA
3
B
VAL
4
n
4
VAL
4
B
ILE
5
n
5
ILE
5
B
VAL
6
n
6
VAL
6
B
ILE
7
n
7
ILE
7
B
PRO
8
n
8
PRO
8
B
ALA
9
n
9
ALA
9
B
ARG
10
n
10
ARG
10
B
TYR
11
n
11
TYR
11
B
GLY
12
n
12
GLY
12
B
SER
13
n
13
SER
13
B
SER
14
n
14
SER
14
B
ARG
15
n
15
ARG
15
B
LEU
16
n
16
LEU
16
B
PRO
17
n
17
PRO
17
B
GLY
18
n
18
GLY
18
B
LYS
19
n
19
LYS
19
B
PRO
20
n
20
PRO
20
B
LEU
21
n
21
LEU
21
B
LEU
22
n
22
LEU
22
B
ASP
23
n
23
ASP
23
B
ILE
24
n
24
ILE
24
B
VAL
25
n
25
VAL
25
B
GLY
26
n
26
GLY
26
B
LYS
27
n
27
LYS
27
B
PRO
28
n
28
PRO
28
B
MET
29
n
29
MET
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
HIS
32
n
32
HIS
32
B
VAL
33
n
33
VAL
33
B
TYR
34
n
34
TYR
34
B
GLU
35
n
35
GLU
35
B
ARG
36
n
36
ARG
36
B
ALA
37
n
37
ALA
37
B
LEU
38
n
38
LEU
38
B
GLN
39
n
39
GLN
39
B
VAL
40
n
40
VAL
40
B
ALA
41
n
41
ALA
41
B
GLY
42
n
42
GLY
42
B
VAL
43
n
43
VAL
43
B
ALA
44
n
44
ALA
44
B
GLU
45
n
45
GLU
45
B
VAL
46
n
46
VAL
46
B
TRP
47
n
47
TRP
47
B
VAL
48
n
48
VAL
48
B
ALA
49
n
49
ALA
49
B
THR
50
n
50
THR
50
B
ASP
51
n
51
ASP
51
B
ASP
52
n
52
ASP
52
B
PRO
53
n
53
PRO
53
B
ARG
54
n
54
ARG
54
B
VAL
55
n
55
VAL
55
B
GLU
56
n
56
GLU
56
B
GLN
57
n
57
GLN
57
B
ALA
58
n
58
ALA
58
B
VAL
59
n
59
VAL
59
B
GLN
60
n
60
GLN
60
B
ALA
61
n
61
ALA
61
B
PHE
62
n
62
PHE
62
B
GLY
63
n
63
GLY
63
B
GLY
64
n
64
GLY
64
B
LYS
65
n
65
LYS
65
B
ALA
66
n
66
ALA
66
B
ILE
67
n
67
ILE
67
B
MET
68
n
68
MET
68
B
THR
69
n
69
THR
69
B
ARG
70
n
70
ARG
70
B
ASN
71
n
71
ASN
71
B
ASP
72
n
72
ASP
72
B
HIS
73
n
73
HIS
73
B
GLU
74
n
74
GLU
74
B
SER
75
n
75
SER
75
B
GLY
76
n
76
GLY
76
B
THR
77
n
77
THR
77
B
ASP
78
n
78
ASP
78
B
ARG
79
n
79
ARG
79
B
LEU
80
n
80
LEU
80
B
VAL
81
n
81
VAL
81
B
GLU
82
n
82
GLU
82
B
VAL
83
n
83
VAL
83
B
MET
84
n
84
MET
84
B
HIS
85
n
85
HIS
85
B
LYS
86
n
86
LYS
86
B
VAL
87
n
87
VAL
87
B
GLU
88
n
88
GLU
88
B
ALA
89
n
89
ALA
89
B
ASP
90
n
90
ASP
90
B
ILE
91
n
91
ILE
91
B
TYR
92
n
92
TYR
92
B
ILE
93
n
93
ILE
93
B
ASN
94
n
94
ASN
94
B
LEU
95
n
95
LEU
95
B
GLN
96
n
96
GLN
96
B
GLY
97
n
97
GLY
97
B
ASP
98
n
98
ASP
98
B
GLU
99
n
99
GLU
99
B
PRO
100
n
100
PRO
100
B
MET
101
n
101
MET
101
B
ILE
102
n
102
ILE
102
B
ARG
103
n
103
ARG
103
B
PRO
104
n
104
PRO
104
B
ARG
105
n
105
ARG
105
B
ASP
106
n
106
ASP
106
B
VAL
107
n
107
VAL
107
B
GLU
108
n
108
GLU
108
B
THR
109
n
109
THR
109
B
LEU
110
n
110
LEU
110
B
LEU
111
n
111
LEU
111
B
GLN
112
n
112
GLN
112
B
GLY
113
n
113
GLY
113
B
MET
114
n
114
MET
114
B
ARG
115
n
115
ARG
115
B
ASP
116
n
116
ASP
116
B
ASP
117
n
117
ASP
117
B
PRO
118
n
118
PRO
118
B
ALA
119
n
119
ALA
119
B
LEU
120
n
120
LEU
120
B
PRO
121
n
121
PRO
121
B
VAL
122
n
122
VAL
122
B
ALA
123
n
123
ALA
123
B
THR
124
n
124
THR
124
B
LEU
125
n
125
LEU
125
B
CYS
126
n
126
CYS
126
B
HIS
127
n
127
HIS
127
B
ALA
128
n
128
ALA
128
B
ILE
129
n
129
ILE
129
B
SER
130
n
130
SER
130
B
ALA
131
n
131
ALA
131
B
ALA
132
n
132
ALA
132
B
GLU
133
n
133
GLU
133
B
ALA
134
n
134
ALA
134
B
ALA
135
n
135
ALA
135
B
GLU
136
n
136
GLU
136
B
PRO
137
n
137
PRO
137
B
SER
138
n
138
SER
138
B
THR
139
n
139
THR
139
B
VAL
140
n
140
VAL
140
B
LYS
141
n
141
LYS
141
B
VAL
142
n
142
VAL
142
B
VAL
143
n
143
VAL
143
B
VAL
144
n
144
VAL
144
B
ASN
145
n
145
ASN
145
B
THR
146
n
146
THR
146
B
ARG
147
n
147
ARG
147
B
GLN
148
n
148
GLN
148
B
ASP
149
n
149
ASP
149
B
ALA
150
n
150
ALA
150
B
LEU
151
n
151
LEU
151
B
TYR
152
n
152
TYR
152
B
PHE
153
n
153
PHE
153
B
SER
154
n
154
SER
154
B
ARG
155
n
155
ARG
155
B
SER
156
n
156
SER
156
B
PRO
157
n
157
PRO
157
B
ILE
158
n
158
ILE
158
B
PRO
159
n
159
PRO
159
B
TYR
160
n
160
TYR
160
B
PRO
161
n
161
PRO
161
B
ARG
162
n
162
ARG
162
B
ASN
163
n
163
ASN
163
B
ALA
164
n
164
ALA
164
B
GLU
165
n
165
GLU
165
B
LYS
166
n
166
LYS
166
B
ALA
167
n
167
ALA
167
B
ARG
168
n
168
ARG
168
B
TYR
169
n
169
TYR
169
B
LEU
170
n
170
LEU
170
B
LYS
171
n
171
LYS
171
B
HIS
172
n
172
HIS
172
B
VAL
173
n
173
VAL
173
B
GLY
174
n
174
GLY
174
B
ILE
175
n
175
ILE
175
B
TYR
176
n
176
TYR
176
B
ALA
177
n
177
ALA
177
B
TYR
178
n
178
TYR
178
B
ARG
179
n
179
ARG
179
B
ARG
180
n
180
ARG
180
B
ASP
181
n
181
ASP
181
B
VAL
182
n
182
VAL
182
B
LEU
183
n
183
LEU
183
B
GLN
184
n
184
GLN
184
B
ASN
185
n
185
ASN
185
B
TYR
186
n
186
TYR
186
B
SER
187
n
187
SER
187
B
GLN
188
n
188
GLN
188
B
LEU
189
n
189
LEU
189
B
PRO
190
n
190
PRO
190
B
GLU
191
n
191
GLU
191
B
SER
192
n
192
SER
192
B
MET
193
n
193
MET
193
B
PRO
194
n
194
PRO
194
B
GLU
195
n
195
GLU
195
B
GLN
196
n
196
GLN
196
B
ALA
197
n
197
ALA
197
B
GLU
198
n
198
GLU
198
B
SER
199
n
199
SER
199
B
LEU
200
n
200
LEU
200
B
GLU
201
n
201
GLU
201
B
GLN
202
n
202
GLN
202
B
LEU
203
n
203
LEU
203
B
ARG
204
n
204
ARG
204
B
LEU
205
n
205
LEU
205
B
MET
206
n
206
MET
206
B
ASN
207
n
207
ASN
207
B
ALA
208
n
208
ALA
208
B
GLY
209
n
209
GLY
209
B
ILE
210
n
210
ILE
210
B
ASN
211
n
211
ASN
211
B
ILE
212
n
212
ILE
212
B
ARG
213
n
213
ARG
213
B
THR
214
n
214
THR
214
B
PHE
215
n
215
PHE
215
B
GLU
216
n
216
GLU
216
B
VAL
217
n
217
VAL
217
B
ALA
218
n
218
ALA
218
B
ALA
219
n
219
ALA
219
B
THR
220
n
220
THR
220
B
GLY
221
n
221
GLY
221
B
PRO
222
n
222
PRO
222
B
GLY
223
n
223
GLY
223
B
VAL
224
n
224
VAL
224
B
ASP
225
n
225
ASP
225
B
THR
226
n
226
THR
226
B
PRO
227
n
227
PRO
227
B
ALA
228
n
228
ALA
228
B
CYS
229
n
229
CYS
229
B
LEU
230
n
230
LEU
230
B
GLU
231
n
231
GLU
231
B
LYS
232
n
232
LYS
232
B
VAL
233
n
233
VAL
233
B
ARG
234
n
234
ARG
234
B
ALA
235
n
235
ALA
235
B
LEU
236
n
236
LEU
236
B
MET
237
n
237
MET
237
B
ALA
238
n
238
ALA
238
B
GLN
239
n
239
GLN
239
B
GLU
240
n
240
GLU
240
B
LEU
241
n
241
LEU
241
B
n
242
242
B
n
243
243
B
n
244
244
B
n
245
245
B
author_and_software_defined_assembly
PQS
2
dimeric
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
1242
C
MG
MG
1_555
A
ASP
225
A
OD1
ASP
225
1_555
67.3
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
1242
C
MG
MG
1_555
A
CTP
1243
D
O2A
CTP
1_555
161.5
A
ASP
225
A
OD1
ASP
225
1_555
A
MG
1242
C
MG
MG
1_555
A
CTP
1243
D
O2A
CTP
1_555
125.6
B
ASP
98
B
OD2
ASP
98
1_555
B
MG
1242
E
MG
MG
1_555
B
ASP
225
B
OD1
ASP
225
1_555
98.8
B
ASP
98
B
OD2
ASP
98
1_555
B
MG
1242
E
MG
MG
1_555
B
CTP
1243
F
O3A
CTP
1_555
102.1
B
ASP
225
B
OD1
ASP
225
1_555
B
MG
1242
E
MG
MG
1_555
B
CTP
1243
F
O3A
CTP
1_555
157.6
B
ASP
98
B
OD2
ASP
98
1_555
B
MG
1242
E
MG
MG
1_555
B
HOH
2101
H
O
HOH
1_555
127.6
B
ASP
225
B
OD1
ASP
225
1_555
B
MG
1242
E
MG
MG
1_555
B
HOH
2101
H
O
HOH
1_555
89.1
B
CTP
1243
F
O3A
CTP
1_555
B
MG
1242
E
MG
MG
1_555
B
HOH
2101
H
O
HOH
1_555
84.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
65
A
N
LYS
65
A
O
VAL
46
A
O
VAL
46
A
N
TRP
47
A
N
TRP
47
A
O
ILE
5
A
O
ILE
5
A
N
VAL
4
A
N
VAL
4
A
O
ILE
91
A
O
ILE
91
A
N
ASN
94
A
N
ASN
94
A
O
TYR
176
A
O
TYR
176
A
N
ALA
177
A
N
ALA
177
A
O
ALA
123
A
O
ALA
123
A
N
THR
124
A
N
THR
124
A
O
ARG
213
A
O
ARG
213
A
N
ILE
24
A
N
ILE
24
A
O
LYS
27
A
O
LYS
27
A
O
VAL
143
A
O
VAL
143
A
N
LEU
151
A
N
LEU
151
B
N
ILE
67
B
N
ILE
67
B
O
VAL
48
B
O
VAL
48
B
N
TRP
47
B
N
TRP
47
B
O
ILE
5
B
O
ILE
5
B
N
VAL
4
B
N
VAL
4
B
O
ILE
91
B
O
ILE
91
B
N
ASN
94
B
N
ASN
94
B
O
TYR
176
B
O
TYR
176
B
N
ALA
177
B
N
ALA
177
B
O
ALA
123
B
O
ALA
123
B
N
THR
124
B
N
THR
124
B
O
ARG
213
B
O
ARG
213
B
N
ILE
24
B
N
ILE
24
B
O
LYS
27
B
O
LYS
27
B
O
VAL
143
B
O
VAL
143
B
N
LEU
151
B
N
LEU
151
1
A
ALA
242
A
ALA
242
1
Y
1
A
GLU
243
A
GLU
243
1
Y
1
A
ASN
244
A
ASN
244
1
Y
1
A
ALA
245
A
ALA
245
1
Y
1
B
ALA
242
B
ALA
242
1
Y
1
B
GLU
243
B
GLU
243
1
Y
1
B
ASN
244
B
ASN
244
1
Y
1
B
ALA
245
B
ALA
245
1
Y
1
A
ARG
15
-67.63
-95.34
1
A
VAL
25
40.32
81.79
1
A
MET
29
-29.61
-55.20
1
A
HIS
73
-35.20
132.27
1
A
ARG
162
-57.37
-72.03
1
A
ALA
164
-34.29
-34.22
1
A
ASN
185
-106.06
42.45
1
A
PRO
227
-57.07
-6.65
1
B
SER
13
-172.83
124.10
1
B
LYS
19
-18.88
-56.09
1
B
PRO
157
-55.86
92.66
0.289
0.233
0.233
2.6
29
14811
5.0
86.5
RANDOM
1
THROUGHOUT
0.0
OTHER
2.6
29
190
3990
60
0
3740
0.007
1.3
2.600
29.000
1GQ9
14812
0.06800
1
9.9000
1.800
87.0
refinement
CNS
THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE COMPLEXED WITH CTP at 100K
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLY
18
A
GLY
18
HELX_P
A
LEU
21
A
LEU
21
5
1
4
A
MET
29
A
MET
29
HELX_P
A
GLN
39
A
GLN
39
1
2
11
A
ASP
52
A
ASP
52
HELX_P
A
PHE
62
A
PHE
62
1
3
11
A
SER
75
A
SER
75
HELX_P
A
HIS
85
A
HIS
85
1
4
11
A
ARG
103
A
ARG
103
HELX_P
A
ASP
117
A
ASP
117
1
5
15
A
ASN
163
A
ASN
163
HELX_P
A
ALA
167
A
ALA
167
5
6
5
A
ARG
180
A
ARG
180
HELX_P
A
ASN
185
A
ASN
185
1
7
6
A
SER
192
A
SER
192
HELX_P
A
SER
199
A
SER
199
1
8
8
A
GLN
202
A
GLN
202
HELX_P
A
ALA
208
A
ALA
208
1
9
7
A
CYS
229
A
CYS
229
HELX_P
A
LEU
241
A
LEU
241
1
10
13
B
GLY
18
B
GLY
18
HELX_P
B
LEU
21
B
LEU
21
5
11
4
B
MET
29
B
MET
29
HELX_P
B
GLN
39
B
GLN
39
1
12
11
B
ASP
52
B
ASP
52
HELX_P
B
PHE
62
B
PHE
62
1
13
11
B
SER
75
B
SER
75
HELX_P
B
VAL
87
B
VAL
87
1
14
13
B
ARG
103
B
ARG
103
HELX_P
B
ASP
117
B
ASP
117
1
15
15
B
SER
130
B
SER
130
HELX_P
B
ALA
135
B
ALA
135
1
16
6
B
ASN
163
B
ASN
163
HELX_P
B
ALA
167
B
ALA
167
5
17
5
B
ARG
180
B
ARG
180
HELX_P
B
ASN
185
B
ASN
185
1
18
6
B
SER
192
B
SER
192
HELX_P
B
SER
199
B
SER
199
1
19
8
B
GLN
202
B
GLN
202
HELX_P
B
ASN
207
B
ASN
207
1
20
6
B
THR
226
B
THR
226
HELX_P
B
LEU
241
B
LEU
241
1
21
16
metalc
2.547
A
ASP
98
A
OD2
ASP
98
1_555
A
MG
1242
C
MG
MG
1_555
metalc
2.738
A
ASP
225
A
OD1
ASP
225
1_555
A
MG
1242
C
MG
MG
1_555
metalc
2.220
A
MG
1242
C
MG
MG
1_555
A
CTP
1243
D
O2A
CTP
1_555
metalc
2.380
B
ASP
98
B
OD2
ASP
98
1_555
B
MG
1242
E
MG
MG
1_555
metalc
2.521
B
ASP
225
B
OD1
ASP
225
1_555
B
MG
1242
E
MG
MG
1_555
metalc
2.168
B
MG
1242
E
MG
MG
1_555
B
CTP
1243
F
O3A
CTP
1_555
metalc
1.930
B
MG
1242
E
MG
MG
1_555
B
HOH
2101
H
O
HOH
1_555
TRANSFERASE
TRANSFERASE, NUCLEOTIDYLTRANSFERASE, CMP-KDO SYNTHETASE, NUCLEOSIDE MONOPHOSPHATE GLYCOSIDES, LIPOPOLYSACCHARIDE BIOSYNTHESIS, SUGAR-ACTIVATING ENZYMES
A
ILE
158
A
ILE
158
1
A
PRO
159
A
PRO
159
0.16
B
ILE
158
B
ILE
158
1
B
PRO
159
B
PRO
159
0.06
given
-0.038442
0.865847
-0.498829
0.854146
-0.230609
-0.466106
-0.518611
-0.443991
-0.730695
0.16900
90.15900
152.36700
KSU5_ECOLI
UNP
1
P42216
1
245
1GQ9
1
245
P42216
A
1
1
245
1
245
1GQ9
1
245
P42216
B
1
1
245
7
2
2
7
2
2
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
LYS
65
A
LYS
65
A
MET
68
A
MET
68
A
GLU
45
A
GLU
45
A
THR
50
A
THR
50
A
ALA
3
A
ALA
3
A
ALA
9
A
ALA
9
A
ILE
91
A
ILE
91
A
ASN
94
A
ASN
94
A
TYR
169
A
TYR
169
A
ARG
179
A
ARG
179
A
VAL
122
A
VAL
122
A
ILE
129
A
ILE
129
A
ILE
212
A
ILE
212
A
GLU
216
A
GLU
216
A
ASP
23
A
ASP
23
A
ILE
24
A
ILE
24
A
LYS
27
A
LYS
27
A
PRO
28
A
PRO
28
A
LYS
141
A
LYS
141
A
VAL
144
A
VAL
144
A
ALA
150
A
ALA
150
A
SER
154
A
SER
154
B
ALA
66
B
ALA
66
B
MET
68
B
MET
68
B
GLU
45
B
GLU
45
B
THR
50
B
THR
50
B
ALA
3
B
ALA
3
B
ALA
9
B
ALA
9
B
ILE
91
B
ILE
91
B
ASN
94
B
ASN
94
B
TYR
169
B
TYR
169
B
ARG
179
B
ARG
179
B
VAL
122
B
VAL
122
B
ILE
129
B
ILE
129
B
ILE
212
B
ILE
212
B
GLU
216
B
GLU
216
B
ASP
23
B
ASP
23
B
ILE
24
B
ILE
24
B
LYS
27
B
LYS
27
B
PRO
28
B
PRO
28
B
LYS
141
B
LYS
141
B
VAL
144
B
VAL
144
B
ALA
150
B
ALA
150
B
SER
154
B
SER
154
BINDING SITE FOR RESIDUE MG A1242
Software
3
BINDING SITE FOR RESIDUE MG B1242
Software
5
BINDING SITE FOR RESIDUE CTP A1243
Software
14
BINDING SITE FOR RESIDUE CTP B1243
Software
19
A
ASP
98
A
ASP
98
3
1_555
A
ASP
225
A
ASP
225
3
1_555
A
CTP
1243
D
CTP
3
1_555
B
LYS
19
B
LYS
19
5
1_555
B
ASP
98
B
ASP
98
5
1_555
B
ASP
225
B
ASP
225
5
1_555
B
CTP
1243
F
CTP
5
1_555
B
HOH
2101
H
HOH
5
1_555
A
PRO
8
A
PRO
8
14
1_555
A
ARG
10
A
ARG
10
14
1_555
A
SER
13
A
SER
13
14
1_555
A
SER
14
A
SER
14
14
1_555
A
ARG
15
A
ARG
15
14
1_555
A
LYS
19
A
LYS
19
14
1_555
A
HIS
73
A
HIS
73
14
1_555
A
ARG
79
A
ARG
79
14
1_555
A
GLN
96
A
GLN
96
14
1_555
A
GLY
97
A
GLY
97
14
1_555
A
ASP
98
A
ASP
98
14
1_555
A
ASP
225
A
ASP
225
14
1_555
A
MG
1242
C
MG
14
1_555
A
HOH
2084
G
HOH
14
1_555
B
PRO
8
B
PRO
8
19
1_555
B
ALA
9
B
ALA
9
19
1_555
B
ARG
10
B
ARG
10
19
1_555
B
SER
13
B
SER
13
19
1_555
B
SER
14
B
SER
14
19
1_555
B
ARG
15
B
ARG
15
19
1_555
B
LYS
19
B
LYS
19
19
1_555
B
HIS
73
B
HIS
73
19
1_555
B
GLU
74
B
GLU
74
19
1_555
B
SER
75
B
SER
75
19
1_555
B
GLY
76
B
GLY
76
19
1_555
B
ARG
79
B
ARG
79
19
1_555
B
GLN
96
B
GLN
96
19
1_555
B
GLY
97
B
GLY
97
19
1_555
B
ASP
98
B
ASP
98
19
1_555
B
MG
1242
E
MG
19
1_555
B
HOH
2101
H
HOH
19
1_555
B
HOH
2103
H
HOH
19
1_555
B
HOH
2106
H
HOH
19
1_555
4
P 1 21 1