0.015625 0.000000 0.000000 0.000000 0.010081 0.000000 0.000000 0.000000 0.014184 0.00000 0.00000 0.00000 Dando, J. Wilkinson, K.W. Ortlepp, S. King, D.J. Brady, R.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 64.000 99.200 70.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 58 233 10.1107/S0907444901020522 11807247 A Reassessment of the Madcam-1 Structure and its Role in Integrin Recognition 2002 10.2210/pdb1gsm/pdb pdb_00001gsm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.9 1.0 X11 EMBL/DESY, HAMBURG 0.9 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 22294.299 MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 EXTRACELLULAR REGION WITH TWO IG-LIKE DOMAINS 1 man polymer 18.015 water 184 nat water MADCAM-1 no no QSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSC GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGD EDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLIEGR QSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSC GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGD EDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLIEGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample HEMATOPOIETIC AND ENDOTHELIAL CELLS 9606 HOMO SAPIENS NSO CELLS 10090 MUS MUSCULUS 1 2.51 43.3 8.00 PROTEIN SOLUTION:10 MG/ML. CRYSTALLIZATION SOLUTION: 16% PEG 4000, 0.5M LI2SO4, PH 7.75. diffrn_source pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues repository Initial release Version format compliance Version format compliance Advisory Data collection Advisory Data collection Database references Other Refinement description 1 0 2002-01-29 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-07-24 1 4 2023-12-13 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf THE CRYSTAL STRUCTURE OF MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 (MADCAM-1) PDBE Y PDBE 2002-01-08 REL REL 1 A O HOH 2075 6.25 HOH water MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1 (MADCAM-1) IS IMPORTANT IN LYMPHOCYTE HOMING TO MUCOSAL TISSUES. HUMAN MADCAM-1 CONTAINS TWO IG-LIKE DOMAINS, A MUCIN-LIKE REGION, A TRANSMEMBRANE DOMAIN AND A CYTOPLASMIC DOMAIN. IT HAS A UNIQUE DUAL FUNCTION AMONG ADHESION MOLECULES. IT BINDS THE INTEGRIN ALPHA4BETA7IG-LIKE DOMAINS, AND WHEN APPROPRIATE, O-GLYCOSYLATED MOLECULES BIND THROUGH ITS MUCIN-LIKE REGION. THE CONSTRUCT WAS DESIGNED WITH A C-TERMINAL XA CLEAVAGE SITE THE C-TERMINAL FOUR RESIDUES ARE PART OF THIS CONSTRUCT 1BQS PDB ENTRY 1BQS PDB experimental model HOH 2001 2 HOH HOH 2001 A HOH 2002 2 HOH HOH 2002 A HOH 2003 2 HOH HOH 2003 A HOH 2004 2 HOH HOH 2004 A HOH 2005 2 HOH HOH 2005 A HOH 2006 2 HOH HOH 2006 A HOH 2007 2 HOH HOH 2007 A HOH 2008 2 HOH HOH 2008 A HOH 2009 2 HOH HOH 2009 A HOH 2010 2 HOH HOH 2010 A HOH 2011 2 HOH HOH 2011 A HOH 2012 2 HOH HOH 2012 A HOH 2013 2 HOH HOH 2013 A HOH 2014 2 HOH HOH 2014 A HOH 2015 2 HOH HOH 2015 A HOH 2016 2 HOH HOH 2016 A HOH 2017 2 HOH HOH 2017 A HOH 2018 2 HOH HOH 2018 A HOH 2019 2 HOH HOH 2019 A HOH 2020 2 HOH HOH 2020 A HOH 2021 2 HOH HOH 2021 A HOH 2022 2 HOH HOH 2022 A HOH 2023 2 HOH HOH 2023 A HOH 2024 2 HOH HOH 2024 A HOH 2025 2 HOH HOH 2025 A HOH 2026 2 HOH HOH 2026 A HOH 2027 2 HOH HOH 2027 A HOH 2028 2 HOH HOH 2028 A HOH 2029 2 HOH HOH 2029 A HOH 2030 2 HOH HOH 2030 A HOH 2031 2 HOH HOH 2031 A HOH 2032 2 HOH HOH 2032 A HOH 2033 2 HOH HOH 2033 A HOH 2034 2 HOH HOH 2034 A HOH 2035 2 HOH HOH 2035 A HOH 2036 2 HOH HOH 2036 A HOH 2037 2 HOH HOH 2037 A HOH 2038 2 HOH HOH 2038 A HOH 2039 2 HOH HOH 2039 A HOH 2040 2 HOH HOH 2040 A HOH 2041 2 HOH HOH 2041 A HOH 2042 2 HOH HOH 2042 A HOH 2043 2 HOH HOH 2043 A HOH 2044 2 HOH HOH 2044 A HOH 2045 2 HOH HOH 2045 A HOH 2046 2 HOH HOH 2046 A HOH 2047 2 HOH HOH 2047 A HOH 2048 2 HOH HOH 2048 A HOH 2049 2 HOH HOH 2049 A HOH 2050 2 HOH HOH 2050 A HOH 2051 2 HOH HOH 2051 A HOH 2052 2 HOH HOH 2052 A HOH 2053 2 HOH HOH 2053 A HOH 2054 2 HOH HOH 2054 A HOH 2055 2 HOH HOH 2055 A HOH 2056 2 HOH HOH 2056 A HOH 2057 2 HOH HOH 2057 A HOH 2058 2 HOH HOH 2058 A HOH 2059 2 HOH HOH 2059 A HOH 2060 2 HOH HOH 2060 A HOH 2061 2 HOH HOH 2061 A HOH 2062 2 HOH HOH 2062 A HOH 2063 2 HOH HOH 2063 A HOH 2064 2 HOH HOH 2064 A HOH 2065 2 HOH HOH 2065 A HOH 2066 2 HOH HOH 2066 A HOH 2067 2 HOH HOH 2067 A HOH 2068 2 HOH HOH 2068 A HOH 2069 2 HOH HOH 2069 A HOH 2070 2 HOH HOH 2070 A HOH 2071 2 HOH HOH 2071 A HOH 2072 2 HOH HOH 2072 A HOH 2073 2 HOH HOH 2073 A HOH 2074 2 HOH HOH 2074 A HOH 2075 2 HOH HOH 2075 A HOH 2076 2 HOH HOH 2076 A HOH 2077 2 HOH HOH 2077 A HOH 2078 2 HOH HOH 2078 A HOH 2079 2 HOH HOH 2079 A HOH 2080 2 HOH HOH 2080 A HOH 2081 2 HOH HOH 2081 A HOH 2082 2 HOH HOH 2082 A HOH 2083 2 HOH HOH 2083 A HOH 2084 2 HOH HOH 2084 A HOH 2085 2 HOH HOH 2085 A HOH 2086 2 HOH HOH 2086 A HOH 2087 2 HOH HOH 2087 A HOH 2088 2 HOH HOH 2088 A HOH 2089 2 HOH HOH 2089 A HOH 2090 2 HOH HOH 2090 A HOH 2091 2 HOH HOH 2091 A HOH 2092 2 HOH HOH 2092 A HOH 2093 2 HOH HOH 2093 A HOH 2094 2 HOH HOH 2094 A HOH 2095 2 HOH HOH 2095 A HOH 2096 2 HOH HOH 2096 A HOH 2097 2 HOH HOH 2097 A HOH 2098 2 HOH HOH 2098 A HOH 2099 2 HOH HOH 2099 A HOH 2100 2 HOH HOH 2100 A HOH 2101 2 HOH HOH 2101 A HOH 2102 2 HOH HOH 2102 A HOH 2103 2 HOH HOH 2103 A HOH 2104 2 HOH HOH 2104 A HOH 2105 2 HOH HOH 2105 A HOH 2106 2 HOH HOH 2106 A HOH 2107 2 HOH HOH 2107 A HOH 2108 2 HOH HOH 2108 A HOH 2109 2 HOH HOH 2109 A HOH 2110 2 HOH HOH 2110 A HOH 2111 2 HOH HOH 2111 A HOH 2112 2 HOH HOH 2112 A HOH 2113 2 HOH HOH 2113 A HOH 2114 2 HOH HOH 2114 A HOH 2115 2 HOH HOH 2115 A HOH 2116 2 HOH HOH 2116 A HOH 2117 2 HOH HOH 2117 A HOH 2118 2 HOH HOH 2118 A HOH 2119 2 HOH HOH 2119 A HOH 2120 2 HOH HOH 2120 A HOH 2121 2 HOH HOH 2121 A HOH 2122 2 HOH HOH 2122 A HOH 2123 2 HOH HOH 2123 A HOH 2124 2 HOH HOH 2124 A HOH 2125 2 HOH HOH 2125 A HOH 2126 2 HOH HOH 2126 A HOH 2127 2 HOH HOH 2127 A HOH 2128 2 HOH HOH 2128 A HOH 2129 2 HOH HOH 2129 A HOH 2130 2 HOH HOH 2130 A HOH 2131 2 HOH HOH 2131 A HOH 2132 2 HOH HOH 2132 A HOH 2133 2 HOH HOH 2133 A HOH 2134 2 HOH HOH 2134 A HOH 2135 2 HOH HOH 2135 A HOH 2136 2 HOH HOH 2136 A HOH 2137 2 HOH HOH 2137 A HOH 2138 2 HOH HOH 2138 A HOH 2139 2 HOH HOH 2139 A HOH 2140 2 HOH HOH 2140 A HOH 2141 2 HOH HOH 2141 A HOH 2142 2 HOH HOH 2142 A HOH 2143 2 HOH HOH 2143 A HOH 2144 2 HOH HOH 2144 A HOH 2145 2 HOH HOH 2145 A HOH 2146 2 HOH HOH 2146 A HOH 2147 2 HOH HOH 2147 A HOH 2148 2 HOH HOH 2148 A HOH 2149 2 HOH HOH 2149 A HOH 2150 2 HOH HOH 2150 A HOH 2151 2 HOH HOH 2151 A HOH 2152 2 HOH HOH 2152 A HOH 2153 2 HOH HOH 2153 A HOH 2154 2 HOH HOH 2154 A HOH 2155 2 HOH HOH 2155 A HOH 2156 2 HOH HOH 2156 A HOH 2157 2 HOH HOH 2157 A HOH 2158 2 HOH HOH 2158 A HOH 2159 2 HOH HOH 2159 A HOH 2160 2 HOH HOH 2160 A HOH 2161 2 HOH HOH 2161 A HOH 2162 2 HOH HOH 2162 A HOH 2163 2 HOH HOH 2163 A HOH 2164 2 HOH HOH 2164 A HOH 2165 2 HOH HOH 2165 A HOH 2166 2 HOH HOH 2166 A HOH 2167 2 HOH HOH 2167 A HOH 2168 2 HOH HOH 2168 A HOH 2169 2 HOH HOH 2169 A HOH 2170 2 HOH HOH 2170 A HOH 2171 2 HOH HOH 2171 A HOH 2172 2 HOH HOH 2172 A HOH 2173 2 HOH HOH 2173 A HOH 2174 2 HOH HOH 2174 A HOH 2175 2 HOH HOH 2175 A HOH 2176 2 HOH HOH 2176 A HOH 2177 2 HOH HOH 2177 A HOH 2178 2 HOH HOH 2178 A HOH 2179 2 HOH HOH 2179 A HOH 2180 2 HOH HOH 2180 A HOH 2181 2 HOH HOH 2181 A HOH 2182 2 HOH HOH 2182 A HOH 2183 2 HOH HOH 2183 A HOH 2184 2 HOH HOH 2184 A n 1 -3 A n 2 -2 A n 3 -1 A n 4 0 A VAL 1 n 5 VAL 1 A LYS 2 n 6 LYS 2 A PRO 3 n 7 PRO 3 A LEU 4 n 8 LEU 4 A GLN 5 n 9 GLN 5 A VAL 6 n 10 VAL 6 A GLU 7 n 11 GLU 7 A PRO 8 n 12 PRO 8 A PRO 9 n 13 PRO 9 A GLU 10 n 14 GLU 10 A PRO 11 n 15 PRO 11 A VAL 12 n 16 VAL 12 A VAL 13 n 17 VAL 13 A ALA 14 n 18 ALA 14 A VAL 15 n 19 VAL 15 A ALA 16 n 20 ALA 16 A LEU 17 n 21 LEU 17 A GLY 18 n 22 GLY 18 A ALA 19 n 23 ALA 19 A SER 20 n 24 SER 20 A ARG 21 n 25 ARG 21 A GLN 22 n 26 GLN 22 A LEU 23 n 27 LEU 23 A THR 24 n 28 THR 24 A CYS 25 n 29 CYS 25 A ARG 26 n 30 ARG 26 A LEU 27 n 31 LEU 27 A ALA 28 n 32 ALA 28 A CYS 29 n 33 CYS 29 A ALA 30 n 34 ALA 30 A ASP 31 n 35 ASP 31 A ARG 32 n 36 ARG 32 A GLY 33 n 37 GLY 33 A ALA 34 n 38 ALA 34 A SER 35 n 39 SER 35 A VAL 36 n 40 VAL 36 A GLN 37 n 41 GLN 37 A TRP 38 n 42 TRP 38 A ARG 39 n 43 ARG 39 A GLY 40 n 44 GLY 40 A LEU 41 n 45 LEU 41 A ASP 42 n 46 ASP 42 A THR 43 n 47 THR 43 A SER 44 n 48 SER 44 A LEU 45 n 49 LEU 45 A GLY 46 n 50 GLY 46 A ALA 47 n 51 ALA 47 A VAL 48 n 52 VAL 48 A GLN 49 n 53 GLN 49 A SER 50 n 54 SER 50 A ASP 51 n 55 ASP 51 A THR 52 n 56 THR 52 A GLY 53 n 57 GLY 53 A ARG 54 n 58 ARG 54 A SER 55 n 59 SER 55 A VAL 56 n 60 VAL 56 A LEU 57 n 61 LEU 57 A THR 58 n 62 THR 58 A VAL 59 n 63 VAL 59 A ARG 60 n 64 ARG 60 A ASN 61 n 65 ASN 61 A ALA 62 n 66 ALA 62 A SER 63 n 67 SER 63 A LEU 64 n 68 LEU 64 A SER 65 n 69 SER 65 A ALA 66 n 70 ALA 66 A ALA 67 n 71 ALA 67 A GLY 68 n 72 GLY 68 A THR 69 n 73 THR 69 A ARG 70 n 74 ARG 70 A VAL 71 n 75 VAL 71 A CYS 72 n 76 CYS 72 A VAL 73 n 77 VAL 73 A GLY 74 n 78 GLY 74 A SER 75 n 79 SER 75 A CYS 76 n 80 CYS 76 A GLY 77 n 81 GLY 77 A GLY 78 n 82 GLY 78 A ARG 79 n 83 ARG 79 A THR 80 n 84 THR 80 A PHE 81 n 85 PHE 81 A GLN 82 n 86 GLN 82 A HIS 83 n 87 HIS 83 A THR 84 n 88 THR 84 A VAL 85 n 89 VAL 85 A GLN 86 n 90 GLN 86 A LEU 87 n 91 LEU 87 A LEU 88 n 92 LEU 88 A VAL 89 n 93 VAL 89 A TYR 90 n 94 TYR 90 A ALA 91 n 95 ALA 91 A PHE 92 n 96 PHE 92 A PRO 93 n 97 PRO 93 A ASN 94 n 98 ASN 94 A GLN 95 n 99 GLN 95 A LEU 96 n 100 LEU 96 A THR 97 n 101 THR 97 A VAL 98 n 102 VAL 98 A SER 99 n 103 SER 99 A PRO 100 n 104 PRO 100 A ALA 101 n 105 ALA 101 A ALA 102 n 106 ALA 102 A LEU 103 n 107 LEU 103 A VAL 104 n 108 VAL 104 A PRO 105 n 109 PRO 105 A GLY 106 n 110 GLY 106 A ASP 107 n 111 ASP 107 A PRO 108 n 112 PRO 108 A GLU 109 n 113 GLU 109 A VAL 110 n 114 VAL 110 A ALA 111 n 115 ALA 111 A CYS 112 n 116 CYS 112 A THR 113 n 117 THR 113 A ALA 114 n 118 ALA 114 A HIS 115 n 119 HIS 115 A LYS 116 n 120 LYS 116 A VAL 117 n 121 VAL 117 A THR 118 n 122 THR 118 A PRO 119 n 123 PRO 119 A VAL 120 n 124 VAL 120 A ASP 121 n 125 ASP 121 A PRO 122 n 126 PRO 122 A ASN 123 n 127 ASN 123 A ALA 124 n 128 ALA 124 A LEU 125 n 129 LEU 125 A SER 126 n 130 SER 126 A PHE 127 n 131 PHE 127 A SER 128 n 132 SER 128 A LEU 129 n 133 LEU 129 A LEU 130 n 134 LEU 130 A VAL 131 n 135 VAL 131 A GLY 132 n 136 GLY 132 A GLY 133 n 137 GLY 133 A GLN 134 n 138 GLN 134 A GLU 135 n 139 GLU 135 A LEU 136 n 140 LEU 136 A GLU 137 n 141 GLU 137 A GLY 138 n 142 GLY 138 A ALA 139 n 143 ALA 139 A GLN 140 n 144 GLN 140 A ALA 141 n 145 ALA 141 A LEU 142 n 146 LEU 142 A GLY 143 n 147 GLY 143 A PRO 144 n 148 PRO 144 A GLU 145 n 149 GLU 145 A VAL 146 n 150 VAL 146 A GLN 147 n 151 GLN 147 A GLU 148 n 152 GLU 148 A GLU 149 n 153 GLU 149 A GLU 150 n 154 GLU 150 A GLU 151 n 155 GLU 151 A GLU 152 n 156 GLU 152 A PRO 153 n 157 PRO 153 A GLN 154 n 158 GLN 154 A GLY 155 n 159 GLY 155 A ASP 156 n 160 ASP 156 A GLU 157 n 161 GLU 157 A ASP 158 n 162 ASP 158 A VAL 159 n 163 VAL 159 A LEU 160 n 164 LEU 160 A PHE 161 n 165 PHE 161 A ARG 162 n 166 ARG 162 A VAL 163 n 167 VAL 163 A THR 164 n 168 THR 164 A GLU 165 n 169 GLU 165 A ARG 166 n 170 ARG 166 A TRP 167 n 171 TRP 167 A ARG 168 n 172 ARG 168 A LEU 169 n 173 LEU 169 A PRO 170 n 174 PRO 170 A PRO 171 n 175 PRO 171 A LEU 172 n 176 LEU 172 A GLY 173 n 177 GLY 173 A THR 174 n 178 THR 174 A PRO 175 n 179 PRO 175 A VAL 176 n 180 VAL 176 A PRO 177 n 181 PRO 177 A PRO 178 n 182 PRO 178 A ALA 179 n 183 ALA 179 A LEU 180 n 184 LEU 180 A TYR 181 n 185 TYR 181 A CYS 182 n 186 CYS 182 A GLN 183 n 187 GLN 183 A ALA 184 n 188 ALA 184 A THR 185 n 189 THR 185 A MET 186 n 190 MET 186 A ARG 187 n 191 ARG 187 A LEU 188 n 192 LEU 188 A PRO 189 n 193 PRO 189 A GLY 190 n 194 GLY 190 A LEU 191 n 195 LEU 191 A GLU 192 n 196 GLU 192 A LEU 193 n 197 LEU 193 A SER 194 n 198 SER 194 A HIS 195 n 199 HIS 195 A ARG 196 n 200 ARG 196 A GLN 197 n 201 GLN 197 A ALA 198 n 202 ALA 198 A ILE 199 n 203 ILE 199 A PRO 200 n 204 PRO 200 A VAL 201 n 205 VAL 201 A LEU 202 n 206 LEU 202 A ILE 203 n 207 ILE 203 A GLU 204 n 208 GLU 204 A GLY 205 n 209 GLY 205 A ARG 206 n 210 ARG 206 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 7 A N GLU 11 A O THR 24 A O THR 28 A N CYS 25 A N CYS 29 A O SER 55 A O SER 59 A N VAL 13 A N VAL 17 A O GLN 86 A O GLN 90 A N LEU 87 A N LEU 91 A O GLY 68 A O GLY 72 A N SER 75 A N SER 79 A O SER 35 A O SER 39 A N TRP 38 A N TRP 42 A O VAL 48 A O VAL 52 A N SER 99 A N SER 103 A O ALA 111 A O ALA 115 A N VAL 117 A N VAL 121 A O PHE 161 A O PHE 165 A N ARG 168 A N ARG 172 A O GLN 140 A O GLN 144 A N GLN 134 A N GLN 138 A O VAL 131 A O VAL 135 A N LEU 130 A N LEU 134 A O TYR 181 A O TYR 185 A N LEU 188 A N LEU 192 A O LEU 191 A O LEU 195 1 A CD LYS 2 A CD LYS 6 0 Y 1 A CE LYS 2 A CE LYS 6 0 Y 1 A NZ LYS 2 A NZ LYS 6 0 Y 1 A CG ARG 32 A CG ARG 36 0 Y 1 A CD ARG 32 A CD ARG 36 0 Y 1 A NE ARG 32 A NE ARG 36 0 Y 1 A CZ ARG 32 A CZ ARG 36 0 Y 1 A NH1 ARG 32 A NH1 ARG 36 0 Y 1 A NH2 ARG 32 A NH2 ARG 36 0 Y 1 A CB LEU 45 A CB LEU 49 0 Y 1 A CG LEU 45 A CG LEU 49 0 Y 1 A CD1 LEU 45 A CD1 LEU 49 0 Y 1 A CD2 LEU 45 A CD2 LEU 49 0 Y 1 A N ASP 158 A N ASP 162 0 Y 1 A CA ASP 158 A CA ASP 162 0 Y 1 A C ASP 158 A C ASP 162 0 Y 1 A O ASP 158 A O ASP 162 0 Y 1 A CG1 ILE 203 A CG1 ILE 207 0 Y 1 A CG2 ILE 203 A CG2 ILE 207 0 Y 1 A CD1 ILE 203 A CD1 ILE 207 0 Y 1 A CB GLU 204 A CB GLU 208 0 Y 1 A CG GLU 204 A CG GLU 208 0 Y 1 A CD GLU 204 A CD GLU 208 0 Y 1 A OE1 GLU 204 A OE1 GLU 208 0 Y 1 A OE2 GLU 204 A OE2 GLU 208 0 Y 1 A CB ARG 206 A CB ARG 210 0 Y 1 A CG ARG 206 A CG ARG 210 0 Y 1 A CD ARG 206 A CD ARG 210 0 Y 1 A NE ARG 206 A NE ARG 210 0 Y 1 A CZ ARG 206 A CZ ARG 210 0 Y 1 A NH1 ARG 206 A NH1 ARG 210 0 Y 1 A NH2 ARG 206 A NH2 ARG 210 0 Y 1 A GLN -3 A GLN 1 1 Y 1 A SER -2 A SER 2 1 Y 1 A LEU -1 A LEU 3 1 Y 1 A GLN 0 A GLN 4 1 Y 1 A THR 43 A THR 47 0 Y 1 A SER 44 A SER 48 0 Y 1 A GLU 150 A GLU 154 0 Y 1 A GLU 151 A GLU 155 0 Y 1 A GLU 152 A GLU 156 0 Y 1 A PRO 153 A PRO 157 0 Y 1 A GLN 154 A GLN 158 0 Y 1 A GLY 155 A GLY 159 0 Y 1 A ASP 156 A ASP 160 0 Y 1 A GLU 157 A GLU 161 0 Y 1 A CA ARG 206 PLANAR 1 A A NE2 OE2 GLN GLU 147 150 1.37 1 A A CG O GLU HOH 150 2145 1.51 1 A A CB O GLU HOH 150 2145 1.58 1 A A CD O GLU HOH 150 2145 1.81 1 A A OE1 O GLU HOH 150 2145 1.96 1 A A OG1 NE2 THR GLN 69 86 2.11 1 A A NZ O LYS HOH 2 2004 2.18 1 A ASP 42 35.87 1 A GLU 149 12.87 1 A A GLU GLU 149 150 -130.44 1 A A C N ASP THR 42 43 0.96 1 A A C N SER LEU 44 45 1.88 1 22.44 3.00 111.90 134.34 A A A CG CD CE LYS LYS LYS 2 2 2 N 1 -41.85 2.20 117.20 75.35 A A A CA C N ASP ASP THR 42 42 43 Y 1 -14.78 1.60 122.70 107.92 A A A O C N ASP ASP THR 42 42 43 Y 1 -39.87 2.50 121.70 81.83 A A A C N CA ASP THR THR 42 43 43 Y 1 5.56 0.90 118.30 123.86 A A A CB CG OD2 ASP ASP ASP 107 107 107 N 1 -34.14 2.20 117.20 83.06 A A A CA C N GLU GLU GLU 149 149 150 Y 1 22.59 1.60 122.70 145.29 A A A O C N GLU GLU GLU 149 149 150 Y 1 -39.32 2.10 128.40 89.08 A A A C N CD GLU PRO PRO 152 153 153 Y 1 -14.41 2.20 111.40 96.99 A A A CG1 CB CG2 ILE ILE ILE 203 203 203 N 1 21.60 2.00 110.40 132.00 A A A CB CA C ARG ARG ARG 206 206 206 N 1 A A CB CG ARG ARG 32 32 -0.494 0.027 1.521 1.027 N 1 A A C N ASP THR 42 43 -0.372 0.023 1.336 0.964 Y 1 A A CA CB LEU LEU 45 45 -0.395 0.023 1.533 1.138 N 1 A A CA CB ASP ASP 158 158 0.219 0.022 1.535 1.754 N 1 A A CB CG1 ILE ILE 203 203 0.284 0.028 1.536 1.820 N 1 A A CA CB GLU GLU 204 204 -0.312 0.022 1.535 1.223 N 1 A A CG2 O THR ARG 43 60 1.12 1_555 4_566 1 A A CG2 C THR ARG 43 60 2.12 1_555 4_566 1 A A CB O THR ARG 43 60 2.17 1_555 4_566 1 A ARG 39 -152.74 -151.28 1 A ASP 42 -73.99 -157.67 1 A THR 43 49.09 -62.42 1 A GLU 151 101.59 48.73 1 A GLU 152 -46.65 164.25 1 A GLN 154 -54.23 178.20 1 A ASP 156 -136.44 -116.79 1 A GLU 157 -152.12 -148.08 1 A ASP 158 62.29 126.81 0.943 0.932 ATOMS WHICH WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS HAVE BEEN GIVEN ZERO OCCUPANCY IN THIS PDB FILE. 0.250 0.217 0.218 1.90 29.49 901 16764 5.100 97.9 3.747 0.113 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.167 0.151 0.80 0.80 1.40 PDB ENTRY 1BQS MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.90 29.49 184 1715 0 0 1531 0.014 0.021 1452 1.858 1.982 1988 0.116 0.200 236 0.007 0.020 1106 0.225 0.300 563 0.182 0.500 228 0.224 0.300 54 0.307 0.500 36 1.063 1.500 970 1.935 2.000 1559 2.885 3.000 482 4.763 4.500 429 0.3000 0.2240 1.95 54 1185 20 1.900 30.000 1GSM 102574 3.000 0.03300 1 43.3000 4.800 99.0 refinement REFMAC 5.0 data reduction DENZO data scaling SCALEPACK phasing CCP4 A reassessment of the MAdCAM-1 structure and its role in integrin recognition. 1 N N 2 N N A SER 63 A SER 67 HELX_P A ALA 67 A ALA 71 5 1 5 disulf 2.027 A CYS 25 A SG CYS 29 1_555 A CYS 72 A SG CYS 76 1_555 disulf 2.007 A CYS 29 A SG CYS 33 1_555 A CYS 76 A SG CYS 80 1_555 disulf 2.069 A CYS 112 A SG CYS 116 1_555 A CYS 182 A SG CYS 186 1_555 CELL ADHESION PROTEIN CELL ADHESION PROTEIN, MADCAM-1, IMMUNOGLOBULIN FOLD, I-SET FOLD, CELL ADHESION GLYCOPROTEIN, INTEGRIN RECOGINITION, MEMBRANE PROTEIN A GLU 7 A GLU 11 1 A PRO 8 A PRO 12 -4.49 A SER 99 A SER 103 1 A PRO 100 A PRO 104 -2.29 A THR 118 A THR 122 1 A PRO 119 A PRO 123 -4.86 A THR 174 A THR 178 1 A PRO 175 A PRO 179 5.78 Q13477 UNP 1 Q13477 1GSM PDB 1 1GSM 19 224 1GSM -3 202 Q13477 A 1 1 206 203 206 1GSM 203 206 1GSM A 2 207 210 1 ASP conflict ASN 94 1GSM A Q13477 UNP 116 98 3 5 4 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 4 A LEU 8 A GLU 7 A GLU 11 A ARG 21 A ARG 25 A LEU 27 A LEU 31 A ARG 54 A ARG 58 A VAL 59 A VAL 63 A VAL 12 A VAL 16 A ALA 16 A ALA 20 A ARG 79 A ARG 83 A TYR 90 A TYR 94 A GLY 68 A GLY 72 A CYS 76 A CYS 80 A SER 35 A SER 39 A ARG 39 A ARG 43 A VAL 48 A VAL 52 A ASP 51 A ASP 55 A GLN 95 A GLN 99 A SER 99 A SER 103 A GLU 109 A GLU 113 A VAL 117 A VAL 121 A PHE 161 A PHE 165 A ARG 168 A ARG 172 A GLN 140 A GLN 144 A GLU 148 A GLU 152 A GLN 134 A GLN 138 A GLU 135 A GLU 139 A LEU 125 A LEU 129 A VAL 131 A VAL 135 A ALA 179 A ALA 183 A LEU 188 A LEU 192 A LEU 191 A LEU 195 A PRO 200 A PRO 204 20 C 2 2 21