0.009907
0.000000
0.000000
0.000000
0.008886
0.000000
0.000000
0.000000
0.013450
0.00000
0.00000
0.00000
Tahirov, T.H.
Ogata, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
100.938
112.533
74.349
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
Y
261
N
C
Y
262
N
N
Y
263
N
C
Y
264
N
C
Y
265
N
N
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
S
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
N
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
S
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
R
C
N
428
N
O
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
N
469
N
C
N
470
N
C
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
sing
Y
268
N
doub
Y
269
N
doub
N
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
To be Published
0353
Structural Basis for Flexible Base Recognition by C/Ebpbeta
US
Cell (Cambridge,Mass.)
CELLB5
0998
0092-8674
108
57
10.1016/S0092-8674(01)00636-5
11792321
Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
854
10.1107/S0907444901003912
11375506
Crystallization and Preliminary X-Ray Analysis of the C/Ebpbeta C-Terminal Region in Complex with DNA
2001
US
Cell (Cambridge,Mass.)
CELLB5
0998
0092-8674
104
755
10.1016/S0092-8674(01)00271-9
11257229
Structural Analyses of DNA Recognition by the Aml1/ Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
2001
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
850
10.1107/S0907444901003900
11375505
Crystallization and Preliminary X-Ray Analyses of Quaternary, Ternary and Binary Protein-DNA Complexes with Involvement of Aml1/Runx-1/Cbfalpha Runt Domain, Cbfbeta and the C/Ebpbeta bZIP Region
2001
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1655
10.1107/S0907444901011982
11679735
Crystals of Ternary Protein-DNA Complexes Composed of DNA-Binding Domains C-Myb or V-Myb, C/Ebpalpha or C/Ebpbeta and Tom-1A Promoter Fragment
2001
10.2210/pdb1gtw/pdb
pdb_00001gtw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110.0
1
IMAGE PLATE
1998-12-11
RIGAKU IMAGE PLATE RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
0.6
1.0
BL44B2
SPring-8
0.6
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
9381.868
CAAT/ENHANCER BINDING PROTEIN BETA
BZIP DOMAIN, RESIDUES 259-336
2
man
polymer
TOM-1A PROMOTER
4898.190
5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3'
1
syn
polymer
TOM-1A PROMOTER
4898.191
5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3'
1
syn
polymer
18.015
water
316
nat
water
C/EBP BETA, LIVER ACTIVATOR PROTEIN, LAP, LIVER-ENRICHED INHIBITORY PROTEIN, LIP, NUCLEAR FACTOR NF-IL6, TRANSCRIPTION FACTOR 5, TCF-5
no
no
VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE
VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE
A,B
polypeptide(L)
no
no
(DA)(DA)(DT)(DG)(DT)(DG)(DG)(DC)(DG)(DC)(DA)(DA)(DT)(DC)(DC)(DT)
AATGTGGCGCAATCCT
C
polydeoxyribonucleotide
no
no
(DT)(DA)(DG)(DG)(DA)(DT)(DT)(DG)(DC)(DG)(DC)(DC)(DA)(DC)(DA)(DT)
TAGGATTGCGCCACAT
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PAR2156
1
3.70
66.0
6.50
0.2 M POTASSIUM CHLORIDE, 0.1 M MAGNESIUM ACETATE, 10.0% W/V PEG 8000, 0.05 M SODIUM CACODYLATE CACODYLATE BUFFER PH 6.5, PROTEIN-DNA COMPLEX SOLUTION CONTAINS 0.01 M DTT AND 0.005 M NAN3, PROTEIN:DNA RATIO IS 1:1.2
2.709
1
20
C
2
D
116
-0.447
C_DA2:DT116_D
1
-1.630
0.049
0.004
-0.100
9.203
1
20
C
3
D
115
0.822
C_DT3:DA115_D
2
-5.080
-0.090
-0.206
-0.040
-16.079
1
19
C
4
D
114
4.452
C_DG4:DC114_D
3
-5.748
-0.315
-0.133
-0.061
-10.010
1
20
C
5
D
113
1.388
C_DT5:DA113_D
4
-7.743
0.003
0.306
-0.129
-7.599
1
19
C
6
D
112
-0.826
C_DG6:DC112_D
5
-6.599
-0.085
-0.100
-0.080
2.737
1
19
C
7
D
111
-3.709
C_DG7:DC111_D
6
-1.951
-0.114
0.084
-0.019
1.262
1
19
C
8
D
110
1.087
C_DC8:DG110_D
7
-3.059
0.239
-0.091
-0.121
-1.727
1
19
C
9
D
109
-2.517
C_DG9:DC109_D
8
-4.536
-0.302
-0.332
-0.178
1.797
1
19
C
10
D
108
-1.375
C_DC10:DG108_D
9
-4.596
0.182
-0.118
-0.074
-0.383
1
20
C
11
D
107
3.175
C_DA11:DT107_D
10
-9.440
-0.008
-0.153
-0.042
6.749
1
20
C
12
D
106
3.643
C_DA12:DT106_D
11
-9.843
-0.082
0.220
-0.064
9.830
1
20
C
13
D
105
9.332
C_DT13:DA105_D
12
-7.192
0.060
-0.141
-0.110
2.896
1
19
C
14
D
104
1.721
C_DC14:DG104_D
13
-11.024
0.167
-0.225
-0.117
-12.186
1
19
C
15
D
103
1.554
C_DC15:DG103_D
14
-4.900
0.148
0.336
-0.094
2.453
1
20
C
16
D
102
1.132
C_DT16:DA102_D
15
-3.632
-0.088
-0.240
-0.110
3.166
33.199
C
C
2
3
-3.696
D
D
116
115
3.146
-2.110
0.066
-0.423
CC_DA2DT3:DA115DT116_DD
1
1.092
-1.912
33.116
-0.399
0.061
3.643
41.016
C
C
3
4
6.217
D
D
115
114
3.711
4.348
0.221
-0.508
CC_DT3DG4:DC114DA115_DD
2
0.458
-0.654
40.792
-1.259
-0.260
3.200
32.386
C
C
4
5
1.015
D
D
114
113
3.179
0.566
-0.598
-0.689
CC_DG4DT5:DA113DC114_DD
3
-2.283
4.097
32.303
-1.332
0.679
3.239
36.205
C
C
5
6
3.642
D
D
113
112
3.229
2.260
-0.003
0.366
CC_DT5DG6:DC112DA113_DD
4
2.236
-3.602
36.070
0.274
0.316
3.079
29.049
C
C
6
7
4.659
D
D
112
111
3.112
2.332
-0.451
-0.650
CC_DG6DG7:DC111DC112_DD
5
-2.564
5.124
28.846
-1.783
0.365
3.348
37.469
C
C
7
8
4.189
D
D
111
110
3.339
2.688
1.226
-0.563
CC_DG7DC8:DG110DC111_DD
6
1.927
-3.003
37.328
-1.237
-1.650
3.014
28.161
C
C
8
9
19.217
D
D
110
109
3.390
9.185
-1.051
-0.539
CC_DC8DG9:DC109DG110_DD
7
0.651
-1.361
26.641
-3.272
2.314
3.059
34.972
C
C
9
10
7.052
D
D
109
108
3.142
4.227
-0.024
-0.509
CC_DG9DC10:DG108DC109_DD
8
-1.292
2.156
34.700
-1.454
-0.145
3.591
37.311
C
C
10
11
15.146
D
D
108
107
3.348
9.560
1.190
0.886
CC_DC10DA11:DT107DG108_DD
9
5.122
-8.115
35.754
0.014
-1.125
3.059
33.726
C
C
11
12
1.762
D
D
107
106
3.020
1.019
-0.445
0.256
CC_DA11DA12:DT106DT107_DD
10
-4.810
8.318
33.376
0.287
0.038
3.139
31.589
C
C
12
13
6.675
D
D
106
105
3.205
3.620
0.730
-0.922
CC_DA12DT13:DA105DT106_DD
11
3.284
-6.056
31.219
-2.349
-0.748
3.236
40.140
C
C
13
14
2.565
D
D
105
104
3.254
1.760
-0.065
-0.298
CC_DT13DC14:DG104DA105_DD
12
0.910
-1.326
40.093
-0.633
0.197
3.400
37.376
C
C
14
15
10.489
D
D
104
103
3.549
6.686
0.580
-0.384
CC_DC14DC15:DG103DG104_DD
13
-1.751
2.747
36.753
-1.542
-1.152
2.702
27.444
C
C
15
16
10.531
D
D
103
102
2.944
4.960
-0.698
-0.572
CC_DC15DT16:DA102DG103_DD
14
3.050
-6.476
26.831
-2.273
2.127
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Non-polymer description
Other
Refinement description
Structure summary
Version format compliance
Data collection
Database references
Other
Refinement description
1
0
2004-02-06
1
1
2014-01-22
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
CRYSTAL STRUCTURE OF C/EBPBETA BZIP DIMERIC BOUND TO A HIGH AFFINITY DNA FRAGMENT
CRYSTAL STRUCTURE OF C/EBPBETA BZIP DIMERIC BOUND TO A HIGH AFFINITY DNA FRAGMENT FROM THE MIM-1 PROMOTER
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
PDBE
Y
PDBE
2002-01-22
REL
REL
HOH
water
1H8A
PDB ENTRY 1H8A
PDB
experimental model
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
HOH
2072
4
HOH
HOH
2072
B
HOH
2073
4
HOH
HOH
2073
B
HOH
2074
4
HOH
HOH
2074
B
HOH
2075
4
HOH
HOH
2075
B
HOH
2076
4
HOH
HOH
2076
B
HOH
2077
4
HOH
HOH
2077
B
HOH
2078
4
HOH
HOH
2078
B
HOH
2079
4
HOH
HOH
2079
B
HOH
2080
4
HOH
HOH
2080
B
HOH
2081
4
HOH
HOH
2081
B
HOH
2082
4
HOH
HOH
2082
B
HOH
2083
4
HOH
HOH
2083
B
HOH
2084
4
HOH
HOH
2084
B
HOH
2085
4
HOH
HOH
2085
B
HOH
2086
4
HOH
HOH
2086
B
HOH
2087
4
HOH
HOH
2087
B
HOH
2088
4
HOH
HOH
2088
B
HOH
2001
4
HOH
HOH
2001
C
HOH
2002
4
HOH
HOH
2002
C
HOH
2003
4
HOH
HOH
2003
C
HOH
2004
4
HOH
HOH
2004
C
HOH
2005
4
HOH
HOH
2005
C
HOH
2006
4
HOH
HOH
2006
C
HOH
2007
4
HOH
HOH
2007
C
HOH
2008
4
HOH
HOH
2008
C
HOH
2009
4
HOH
HOH
2009
C
HOH
2010
4
HOH
HOH
2010
C
HOH
2011
4
HOH
HOH
2011
C
HOH
2012
4
HOH
HOH
2012
C
HOH
2013
4
HOH
HOH
2013
C
HOH
2014
4
HOH
HOH
2014
C
HOH
2015
4
HOH
HOH
2015
C
HOH
2016
4
HOH
HOH
2016
C
HOH
2017
4
HOH
HOH
2017
C
HOH
2018
4
HOH
HOH
2018
C
HOH
2019
4
HOH
HOH
2019
C
HOH
2020
4
HOH
HOH
2020
C
HOH
2021
4
HOH
HOH
2021
C
HOH
2022
4
HOH
HOH
2022
C
HOH
2023
4
HOH
HOH
2023
C
HOH
2024
4
HOH
HOH
2024
C
HOH
2025
4
HOH
HOH
2025
C
HOH
2026
4
HOH
HOH
2026
C
HOH
2027
4
HOH
HOH
2027
C
HOH
2028
4
HOH
HOH
2028
C
HOH
2029
4
HOH
HOH
2029
C
HOH
2030
4
HOH
HOH
2030
C
HOH
2031
4
HOH
HOH
2031
C
HOH
2032
4
HOH
HOH
2032
C
HOH
2033
4
HOH
HOH
2033
C
HOH
2034
4
HOH
HOH
2034
C
HOH
2035
4
HOH
HOH
2035
C
HOH
2036
4
HOH
HOH
2036
C
HOH
2037
4
HOH
HOH
2037
C
HOH
2038
4
HOH
HOH
2038
C
HOH
2039
4
HOH
HOH
2039
C
HOH
2040
4
HOH
HOH
2040
C
HOH
2041
4
HOH
HOH
2041
C
HOH
2042
4
HOH
HOH
2042
C
HOH
2043
4
HOH
HOH
2043
C
HOH
2044
4
HOH
HOH
2044
C
HOH
2045
4
HOH
HOH
2045
C
HOH
2046
4
HOH
HOH
2046
C
HOH
2047
4
HOH
HOH
2047
C
HOH
2048
4
HOH
HOH
2048
C
HOH
2049
4
HOH
HOH
2049
C
HOH
2050
4
HOH
HOH
2050
C
HOH
2051
4
HOH
HOH
2051
C
HOH
2052
4
HOH
HOH
2052
C
HOH
2053
4
HOH
HOH
2053
C
HOH
2054
4
HOH
HOH
2054
C
HOH
2055
4
HOH
HOH
2055
C
HOH
2056
4
HOH
HOH
2056
C
HOH
2057
4
HOH
HOH
2057
C
HOH
2058
4
HOH
HOH
2058
C
HOH
2001
4
HOH
HOH
2001
D
HOH
2002
4
HOH
HOH
2002
D
HOH
2003
4
HOH
HOH
2003
D
HOH
2004
4
HOH
HOH
2004
D
HOH
2005
4
HOH
HOH
2005
D
HOH
2006
4
HOH
HOH
2006
D
HOH
2007
4
HOH
HOH
2007
D
HOH
2008
4
HOH
HOH
2008
D
HOH
2009
4
HOH
HOH
2009
D
HOH
2010
4
HOH
HOH
2010
D
HOH
2011
4
HOH
HOH
2011
D
HOH
2012
4
HOH
HOH
2012
D
HOH
2013
4
HOH
HOH
2013
D
HOH
2014
4
HOH
HOH
2014
D
HOH
2015
4
HOH
HOH
2015
D
HOH
2016
4
HOH
HOH
2016
D
HOH
2017
4
HOH
HOH
2017
D
HOH
2018
4
HOH
HOH
2018
D
HOH
2019
4
HOH
HOH
2019
D
HOH
2020
4
HOH
HOH
2020
D
HOH
2021
4
HOH
HOH
2021
D
HOH
2022
4
HOH
HOH
2022
D
HOH
2023
4
HOH
HOH
2023
D
HOH
2024
4
HOH
HOH
2024
D
HOH
2025
4
HOH
HOH
2025
D
HOH
2026
4
HOH
HOH
2026
D
HOH
2027
4
HOH
HOH
2027
D
HOH
2028
4
HOH
HOH
2028
D
HOH
2029
4
HOH
HOH
2029
D
HOH
2030
4
HOH
HOH
2030
D
HOH
2031
4
HOH
HOH
2031
D
HOH
2032
4
HOH
HOH
2032
D
HOH
2033
4
HOH
HOH
2033
D
HOH
2034
4
HOH
HOH
2034
D
HOH
2035
4
HOH
HOH
2035
D
HOH
2036
4
HOH
HOH
2036
D
HOH
2037
4
HOH
HOH
2037
D
HOH
2038
4
HOH
HOH
2038
D
HOH
2039
4
HOH
HOH
2039
D
HOH
2040
4
HOH
HOH
2040
D
HOH
2041
4
HOH
HOH
2041
D
HOH
2042
4
HOH
HOH
2042
D
HOH
2043
4
HOH
HOH
2043
D
HOH
2044
4
HOH
HOH
2044
D
HOH
2045
4
HOH
HOH
2045
D
HOH
2046
4
HOH
HOH
2046
D
HOH
2047
4
HOH
HOH
2047
D
HOH
2048
4
HOH
HOH
2048
D
HOH
2049
4
HOH
HOH
2049
D
HOH
2050
4
HOH
HOH
2050
D
HOH
2051
4
HOH
HOH
2051
D
HOH
2052
4
HOH
HOH
2052
D
HOH
2053
4
HOH
HOH
2053
D
HOH
2054
4
HOH
HOH
2054
D
HOH
2055
4
HOH
HOH
2055
D
HOH
2056
4
HOH
HOH
2056
D
HOH
2057
4
HOH
HOH
2057
D
HOH
2058
4
HOH
HOH
2058
D
HOH
2059
4
HOH
HOH
2059
D
HOH
2060
4
HOH
HOH
2060
D
HOH
2061
4
HOH
HOH
2061
D
HOH
2062
4
HOH
HOH
2062
D
HOH
2063
4
HOH
HOH
2063
D
HOH
2064
4
HOH
HOH
2064
D
HOH
2065
4
HOH
HOH
2065
D
HOH
2066
4
HOH
HOH
2066
D
HOH
2067
4
HOH
HOH
2067
D
HOH
2068
4
HOH
HOH
2068
D
HOH
2069
4
HOH
HOH
2069
D
HOH
2070
4
HOH
HOH
2070
D
HOH
2071
4
HOH
HOH
2071
D
HOH
2072
4
HOH
HOH
2072
D
HOH
2073
4
HOH
HOH
2073
D
HOH
2074
4
HOH
HOH
2074
D
HOH
2075
4
HOH
HOH
2075
D
HOH
2076
4
HOH
HOH
2076
D
HOH
2077
4
HOH
HOH
2077
D
HOH
2078
4
HOH
HOH
2078
D
HOH
2079
4
HOH
HOH
2079
D
HOH
2080
4
HOH
HOH
2080
D
HOH
2081
4
HOH
HOH
2081
D
HOH
2082
4
HOH
HOH
2082
D
HOH
2083
4
HOH
HOH
2083
D
HOH
2084
4
HOH
HOH
2084
D
n
1
259
A
n
2
260
A
n
3
261
A
n
4
262
A
n
5
263
A
n
6
264
A
n
7
265
A
n
8
266
A
n
9
267
A
ASP
268
n
10
ASP
268
A
LYS
269
n
11
LYS
269
A
HIS
270
n
12
HIS
270
A
SER
271
n
13
SER
271
A
ASP
272
n
14
ASP
272
A
GLU
273
n
15
GLU
273
A
TYR
274
n
16
TYR
274
A
LYS
275
n
17
LYS
275
A
ILE
276
n
18
ILE
276
A
ARG
277
n
19
ARG
277
A
ARG
278
n
20
ARG
278
A
GLU
279
n
21
GLU
279
A
ARG
280
n
22
ARG
280
A
ASN
281
n
23
ASN
281
A
ASN
282
n
24
ASN
282
A
ILE
283
n
25
ILE
283
A
ALA
284
n
26
ALA
284
A
VAL
285
n
27
VAL
285
A
ARG
286
n
28
ARG
286
A
LYS
287
n
29
LYS
287
A
SER
288
n
30
SER
288
A
ARG
289
n
31
ARG
289
A
ASP
290
n
32
ASP
290
A
LYS
291
n
33
LYS
291
A
ALA
292
n
34
ALA
292
A
LYS
293
n
35
LYS
293
A
MET
294
n
36
MET
294
A
ARG
295
n
37
ARG
295
A
ASN
296
n
38
ASN
296
A
LEU
297
n
39
LEU
297
A
GLU
298
n
40
GLU
298
A
THR
299
n
41
THR
299
A
GLN
300
n
42
GLN
300
A
HIS
301
n
43
HIS
301
A
LYS
302
n
44
LYS
302
A
VAL
303
n
45
VAL
303
A
LEU
304
n
46
LEU
304
A
GLU
305
n
47
GLU
305
A
LEU
306
n
48
LEU
306
A
THR
307
n
49
THR
307
A
ALA
308
n
50
ALA
308
A
GLU
309
n
51
GLU
309
A
ASN
310
n
52
ASN
310
A
GLU
311
n
53
GLU
311
A
ARG
312
n
54
ARG
312
A
LEU
313
n
55
LEU
313
A
GLN
314
n
56
GLN
314
A
LYS
315
n
57
LYS
315
A
LYS
316
n
58
LYS
316
A
VAL
317
n
59
VAL
317
A
GLU
318
n
60
GLU
318
A
GLN
319
n
61
GLN
319
A
LEU
320
n
62
LEU
320
A
SER
321
n
63
SER
321
A
ARG
322
n
64
ARG
322
A
GLU
323
n
65
GLU
323
A
LEU
324
n
66
LEU
324
A
SER
325
n
67
SER
325
A
THR
326
n
68
THR
326
A
LEU
327
n
69
LEU
327
A
ARG
328
n
70
ARG
328
A
ASN
329
n
71
ASN
329
A
LEU
330
n
72
LEU
330
A
PHE
331
n
73
PHE
331
A
LYS
332
n
74
LYS
332
A
GLN
333
n
75
GLN
333
A
n
76
334
A
n
77
335
A
n
78
336
A
n
1
259
B
n
2
260
B
n
3
261
B
n
4
262
B
n
5
263
B
n
6
264
B
n
7
265
B
n
8
266
B
n
9
267
B
ASP
268
n
10
ASP
268
B
LYS
269
n
11
LYS
269
B
HIS
270
n
12
HIS
270
B
SER
271
n
13
SER
271
B
ASP
272
n
14
ASP
272
B
GLU
273
n
15
GLU
273
B
TYR
274
n
16
TYR
274
B
LYS
275
n
17
LYS
275
B
ILE
276
n
18
ILE
276
B
ARG
277
n
19
ARG
277
B
ARG
278
n
20
ARG
278
B
GLU
279
n
21
GLU
279
B
ARG
280
n
22
ARG
280
B
ASN
281
n
23
ASN
281
B
ASN
282
n
24
ASN
282
B
ILE
283
n
25
ILE
283
B
ALA
284
n
26
ALA
284
B
VAL
285
n
27
VAL
285
B
ARG
286
n
28
ARG
286
B
LYS
287
n
29
LYS
287
B
SER
288
n
30
SER
288
B
ARG
289
n
31
ARG
289
B
ASP
290
n
32
ASP
290
B
LYS
291
n
33
LYS
291
B
ALA
292
n
34
ALA
292
B
LYS
293
n
35
LYS
293
B
MET
294
n
36
MET
294
B
ARG
295
n
37
ARG
295
B
ASN
296
n
38
ASN
296
B
LEU
297
n
39
LEU
297
B
GLU
298
n
40
GLU
298
B
THR
299
n
41
THR
299
B
GLN
300
n
42
GLN
300
B
HIS
301
n
43
HIS
301
B
LYS
302
n
44
LYS
302
B
VAL
303
n
45
VAL
303
B
LEU
304
n
46
LEU
304
B
GLU
305
n
47
GLU
305
B
LEU
306
n
48
LEU
306
B
THR
307
n
49
THR
307
B
ALA
308
n
50
ALA
308
B
GLU
309
n
51
GLU
309
B
ASN
310
n
52
ASN
310
B
GLU
311
n
53
GLU
311
B
ARG
312
n
54
ARG
312
B
LEU
313
n
55
LEU
313
B
GLN
314
n
56
GLN
314
B
LYS
315
n
57
LYS
315
B
LYS
316
n
58
LYS
316
B
VAL
317
n
59
VAL
317
B
GLU
318
n
60
GLU
318
B
GLN
319
n
61
GLN
319
B
LEU
320
n
62
LEU
320
B
SER
321
n
63
SER
321
B
ARG
322
n
64
ARG
322
B
GLU
323
n
65
GLU
323
B
LEU
324
n
66
LEU
324
B
SER
325
n
67
SER
325
B
THR
326
n
68
THR
326
B
LEU
327
n
69
LEU
327
B
ARG
328
n
70
ARG
328
B
ASN
329
n
71
ASN
329
B
LEU
330
n
72
LEU
330
B
PHE
331
n
73
PHE
331
B
LYS
332
n
74
LYS
332
B
GLN
333
n
75
GLN
333
B
LEU
334
n
76
LEU
334
B
PRO
335
n
77
PRO
335
B
n
78
336
B
DA
1
n
1
DA
1
C
DA
2
n
2
DA
2
C
DT
3
n
3
DT
3
C
DG
4
n
4
DG
4
C
DT
5
n
5
DT
5
C
DG
6
n
6
DG
6
C
DG
7
n
7
DG
7
C
DC
8
n
8
DC
8
C
DG
9
n
9
DG
9
C
DC
10
n
10
DC
10
C
DA
11
n
11
DA
11
C
DA
12
n
12
DA
12
C
DT
13
n
13
DT
13
C
DC
14
n
14
DC
14
C
DC
15
n
15
DC
15
C
DT
16
n
16
DT
16
C
DT
101
n
1
DT
101
D
DA
102
n
2
DA
102
D
DG
103
n
3
DG
103
D
DG
104
n
4
DG
104
D
DA
105
n
5
DA
105
D
DT
106
n
6
DT
106
D
DT
107
n
7
DT
107
D
DG
108
n
8
DG
108
D
DC
109
n
9
DC
109
D
DG
110
n
10
DG
110
D
DC
111
n
11
DC
111
D
DC
112
n
12
DC
112
D
DA
113
n
13
DA
113
D
DC
114
n
14
DC
114
D
DA
115
n
15
DA
115
D
DT
116
n
16
DT
116
D
author_and_software_defined_assembly
PISA
8
octameric
software_defined_assembly
PISA
4
tetrameric
13900
-94.5
27120
6050
-44.8
14460
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_567
x,-y+1,-z+2
crystal symmetry operation
0.0000000000
112.5330000000
148.6980000000
1
A
HOH
2045
E
HOH
1
A
CA
GLN
333
A
CA
GLN
75
1
Y
1
A
C
GLN
333
A
C
GLN
75
1
Y
1
A
O
GLN
333
A
O
GLN
75
1
Y
1
A
CB
GLN
333
A
CB
GLN
75
1
Y
1
A
CG
GLN
333
A
CG
GLN
75
1
Y
1
A
CD
GLN
333
A
CD
GLN
75
1
Y
1
A
OE1
GLN
333
A
OE1
GLN
75
1
Y
1
A
NE2
GLN
333
A
NE2
GLN
75
1
Y
1
B
CA
PRO
335
B
CA
PRO
77
1
Y
1
B
C
PRO
335
B
C
PRO
77
1
Y
1
B
O
PRO
335
B
O
PRO
77
1
Y
1
B
CB
PRO
335
B
CB
PRO
77
1
Y
1
B
CG
PRO
335
B
CG
PRO
77
1
Y
1
B
CD
PRO
335
B
CD
PRO
77
1
Y
1
A
VAL
259
A
VAL
1
1
Y
1
A
LYS
260
A
LYS
2
1
Y
1
A
SER
261
A
SER
3
1
Y
1
A
LYS
262
A
LYS
4
1
Y
1
A
ALA
263
A
ALA
5
1
Y
1
A
LYS
264
A
LYS
6
1
Y
1
A
LYS
265
A
LYS
7
1
Y
1
A
THR
266
A
THR
8
1
Y
1
A
VAL
267
A
VAL
9
1
Y
1
A
LEU
334
A
LEU
76
1
Y
1
A
PRO
335
A
PRO
77
1
Y
1
A
GLU
336
A
GLU
78
1
Y
1
B
VAL
259
B
VAL
1
1
Y
1
B
LYS
260
B
LYS
2
1
Y
1
B
SER
261
B
SER
3
1
Y
1
B
LYS
262
B
LYS
4
1
Y
1
B
ALA
263
B
ALA
5
1
Y
1
B
LYS
264
B
LYS
6
1
Y
1
B
LYS
265
B
LYS
7
1
Y
1
B
THR
266
B
THR
8
1
Y
1
B
VAL
267
B
VAL
9
1
Y
1
B
GLU
336
B
GLU
78
1
Y
1
2.01
0.30
108.30
110.31
D
D
D
O4'
C1'
N9
DG
DG
DG
103
103
103
N
1
2.48
0.30
108.30
110.78
D
D
D
O4'
C1'
N9
DG
DG
DG
110
110
110
N
1
A
LYS
332
-65.57
72.00
1
B
SER
271
-47.62
156.88
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
42.9
7.95
0.00
0.00
-5.16
0.00
-2.79
0.271
0.006
0.231
0.231
1.85
19.87
1809
35717
5.1
98.0
RANDOM
327560.56
1
RESTRAINED
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 1H8A
FLAT MODEL
25.00
0.348766
0.32
0.27
20.00
0.44
0.39
1.85
19.87
316
2095
0
650
1129
0.004
1.0
15.7
1.13
4.97
1.50
5.68
2.00
6.94
2.00
9.23
2.50
0.432
0.026
0.378
1.97
282
5402
6
5.0
94.9
34.2
1.700
20.000
1GTW
44759
0.000
0.05200
1
21.0506
4.008
95.8
0.43000
1.70
1.76
1.343
1
2.43
82.9
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
DIMER OF TETRAMER CONTAINING TWO PROTEIN
CHAINS AND TWO DNA CHAINS
A
SER
271
A
SER
13
HELX_P
A
ASN
329
A
ASN
71
1
1
59
B
SER
271
B
SER
13
HELX_P
B
GLN
333
B
GLN
75
1
2
63
hydrog
WATSON-CRICK
C
DA
2
C
N1
DA
2
1_555
D
DT
116
D
N3
DT
16
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N6
DA
2
1_555
D
DT
116
D
O4
DT
16
1_555
hydrog
WATSON-CRICK
C
DT
3
C
N3
DT
3
1_555
D
DA
115
D
N1
DA
15
1_555
hydrog
WATSON-CRICK
C
DT
3
C
O4
DT
3
1_555
D
DA
115
D
N6
DA
15
1_555
hydrog
WATSON-CRICK
C
DG
4
C
N1
DG
4
1_555
D
DC
114
D
N3
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
4
C
N2
DG
4
1_555
D
DC
114
D
O2
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
4
C
O6
DG
4
1_555
D
DC
114
D
N4
DC
14
1_555
hydrog
WATSON-CRICK
C
DT
5
C
N3
DT
5
1_555
D
DA
113
D
N1
DA
13
1_555
hydrog
WATSON-CRICK
C
DT
5
C
O4
DT
5
1_555
D
DA
113
D
N6
DA
13
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N1
DG
6
1_555
D
DC
112
D
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N2
DG
6
1_555
D
DC
112
D
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
6
C
O6
DG
6
1_555
D
DC
112
D
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N1
DG
7
1_555
D
DC
111
D
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N2
DG
7
1_555
D
DC
111
D
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
C
O6
DG
7
1_555
D
DC
111
D
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N3
DC
8
1_555
D
DG
110
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N4
DC
8
1_555
D
DG
110
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
8
C
O2
DC
8
1_555
D
DG
110
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N1
DG
9
1_555
D
DC
109
D
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N2
DG
9
1_555
D
DC
109
D
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
9
C
O6
DG
9
1_555
D
DC
109
D
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DC
10
C
N3
DC
10
1_555
D
DG
108
D
N1
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
10
C
N4
DC
10
1_555
D
DG
108
D
O6
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
10
C
O2
DC
10
1_555
D
DG
108
D
N2
DG
8
1_555
hydrog
WATSON-CRICK
C
DA
11
C
N1
DA
11
1_555
D
DT
107
D
N3
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
11
C
N6
DA
11
1_555
D
DT
107
D
O4
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N1
DA
12
1_555
D
DT
106
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N6
DA
12
1_555
D
DT
106
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DT
13
C
N3
DT
13
1_555
D
DA
105
D
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
13
C
O4
DT
13
1_555
D
DA
105
D
N6
DA
5
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N3
DC
14
1_555
D
DG
104
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N4
DC
14
1_555
D
DG
104
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
C
O2
DC
14
1_555
D
DG
104
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
15
1_555
D
DG
103
D
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
15
1_555
D
DG
103
D
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
15
1_555
D
DG
103
D
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DT
16
C
N3
DT
16
1_555
D
DA
102
D
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
16
C
O4
DT
16
1_555
D
DA
102
D
N6
DA
2
1_555
TRANSCRIPTION/DNA
TRANSCRIPTION/DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, C/EBP, HYPOTHETICAL PROTEIN, TRANSCRIPTION-DNA complex
CEBPB_HUMAN
UNP
1
P17676
1GTW
PDB
2
1GTW
1GTW
PDB
3
1GTW
259
336
1GTW
259
336
P17676
A
1
1
78
259
336
1GTW
259
336
P17676
B
1
1
78
1
16
1GTW
1
16
1GTW
C
2
1
16
101
116
1GTW
101
116
1GTW
D
3
1
16
20
C 2 2 21