1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nielsen, K.M.E. Petersen, M. Haakansson, A.E. Wengel, J. Jacobsen, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 90.00 90.00 1.000 1.000 1.000 C11 H15 N2 O9 P 350.219 n [(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking GE Chemistry 0947-6539 8 3001 10.1002/1521-3765(20020703)8:13<3001::AID-CHEM3001>3.0.CO;2-1 12489231 Alfa-L-Lna (Alfa-L-Ribo Configured Locked Nucleic Acid) Recognition of DNA: An NMR Spectroscopic Study 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ATL IS ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S, 3R, 4S, 7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2. 2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE 3098.997 5- D(*CP*(ATL)P*GP*CP*(ATL)P*(ATL)P*CP*(ATL)P* GP*C) -3 1 syn polymer 3103.057 5- D(*GP*CP*AP*GP*AP*AP*GP*CP*AP*G) -3 1 syn polymer no yes (DC)(ATL)(DG)(DC)(ATL)(ATL)(DC)(ATL)(DG)(DC) CTGCTTCTGC A polydeoxyribonucleotide/polyribonucleotide hybrid no no (DG)(DC)(DA)(DG)(DA)(DA)(DG)(DC)(DA)(DG) GCAGAAGCAG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n -9.174 1 19 A 1 B 20 -2.513 A_DC1:DG20_B 1 4.655 0.407 -0.033 0.017 -0.956 1 20 A 2 B 19 2.744 A_ATL2:DA19_B 2 -0.892 -0.348 -0.729 0.022 -13.163 1 19 A 3 B 18 -1.310 A_DG3:DC18_B 3 9.786 -0.627 -0.448 -0.120 -5.547 1 19 A 4 B 17 -0.002 A_DC4:DG17_B 4 0.602 0.208 -0.144 0.076 -14.172 1 20 A 5 B 16 -0.592 A_ATL5:DA16_B 5 -9.912 -0.248 0.055 0.099 -20.248 1 20 A 6 B 15 -5.662 A_ATL6:DA15_B 6 -6.029 0.683 0.946 -0.212 -2.775 1 19 A 7 B 14 -1.797 A_DC7:DG14_B 7 -23.004 -0.022 0.242 0.102 -9.289 1 20 A 8 B 13 -4.887 A_ATL8:DA13_B 8 -11.503 0.186 0.737 -0.058 -1.612 1 19 A 9 B 12 -2.382 A_DG9:DC12_B 9 -32.511 -0.517 0.508 -0.160 -5.194 1 19 A 10 B 11 -3.125 A_DC10:DG11_B 10 -13.375 0.978 0.074 -0.232 3.553 25.522 A A 1 2 -4.301 B B 20 19 3.533 -1.898 1.196 -0.931 AA_DC1ATL2:DA19DG20_BB 1 -0.795 1.801 25.440 -1.520 -2.953 4.580 47.031 A A 2 3 -41.369 B B 19 18 5.054 -30.562 -0.100 -1.053 AA_ATL2DG3:DC18DA19_BB 2 2.559 -3.463 36.094 2.948 0.483 3.141 35.415 A A 3 4 6.293 B B 18 17 3.261 3.821 -0.175 -0.998 AA_DG3DC4:DG17DC18_BB 3 -0.672 1.106 35.209 -2.192 0.190 3.314 24.553 A A 4 5 5.718 B B 17 16 3.456 2.427 0.255 -1.371 AA_DC4ATL5:DA16DG17_BB 4 1.105 -2.603 24.410 -4.002 -0.246 3.607 35.557 A A 5 6 -1.792 B B 16 15 3.582 -1.092 -0.086 -1.290 AA_ATL5ATL6:DA15DA16_BB 5 -3.891 6.384 35.334 -1.936 -0.484 2.546 33.799 A A 6 7 -11.430 B B 15 14 2.991 -6.464 -0.321 0.470 AA_ATL6DC7:DG14DA15_BB 6 12.111 -21.416 30.960 1.734 2.287 3.396 34.104 A A 7 8 -3.040 B B 14 13 3.484 -1.780 0.813 -0.141 AA_DC7ATL8:DA13DG14_BB 7 -3.254 5.558 33.907 0.058 -1.931 2.906 35.363 A A 8 9 -14.727 B B 13 12 3.284 -8.829 -0.606 0.684 AA_ATL8DG9:DC12DA13_BB 8 4.958 -8.270 33.927 2.385 1.705 3.604 47.101 A A 9 10 -3.072 B B 12 11 3.682 -2.454 0.660 1.002 AA_DG9DC10:DG11DC12_BB 9 -1.663 2.083 47.013 1.478 -0.978 repository Initial release Version format compliance Version format compliance 1 0 2002-07-05 1 1 2011-05-08 1 2 2011-07-13 PDBE Y PDBE 2002-02-06 REL MODRES: 1GV6 ATL A 2() ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO [2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE MODRES: 1GV6 ATL A 5() ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO [2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE MODRES: 1GV6 ATL A 6() ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO [2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE MODRES: 1GV6 ATL A 8() ALFA-L-LNA (ALFA-L-RIBO CONFIGURED LOCKED NUCLEIC ACID OR [ (1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO [2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE THE STRUCTURE WAS DETERMINED USING 1H,1H- NOES FROM 100MS NOESY AND WATERGATE NOESY EXPERIMENTS. SUGAR TORSION RESTRAINTS WERE DERIVED BY ANALYSIS OF A DQF-COSY SPECTRUM 20 20 NOESY DQF-COSY TOCSY 0.01 M 7.0 pH 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. simulated annealing 12 CASE, DA, KOLLMAN, PA, ET AL. refinement AMBER5 structure solution FELIX structure solution MARDIGRAS structure solution AMBER5 500 Varian UNITY DC 1 n 1 DC 1 A ATL 2 n 2 ATL 2 A DG 3 n 3 DG 3 A DC 4 n 4 DC 4 A ATL 5 n 5 ATL 5 A ATL 6 n 6 ATL 6 A DC 7 n 7 DC 7 A ATL 8 n 8 ATL 8 A DG 9 n 9 DG 9 A DC 10 n 10 DC 10 A DG 11 n 1 DG 11 B DC 12 n 2 DC 12 B DA 13 n 3 DA 13 B DG 14 n 4 DG 14 B DA 15 n 5 DA 15 B DA 16 n 6 DA 16 B DG 17 n 7 DG 17 B DC 18 n 8 DC 18 B DA 19 n 9 DA 19 B DG 20 n 10 DG 20 B author_defined_assembly 2 dimeric A ATL 2 A ATL 2 DT A ATL 5 A ATL 5 DT A ATL 6 A ATL 6 DT A ATL 8 A ATL 8 DT 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 9 0.182 SIDE CHAIN 1 B DG 14 0.058 SIDE CHAIN 2 A DG 9 0.198 SIDE CHAIN 2 B DG 14 0.077 SIDE CHAIN 3 A DC 7 0.070 SIDE CHAIN 3 A DG 9 0.173 SIDE CHAIN 3 B DG 14 0.064 SIDE CHAIN 4 A DG 9 0.167 SIDE CHAIN 4 B DG 14 0.065 SIDE CHAIN 5 A DG 9 0.174 SIDE CHAIN 5 B DG 14 0.062 SIDE CHAIN 6 A DC 7 0.064 SIDE CHAIN 6 A DG 9 0.182 SIDE CHAIN 6 B DG 14 0.061 SIDE CHAIN 6 B DG 17 0.059 SIDE CHAIN 7 A DG 9 0.139 SIDE CHAIN 7 B DG 14 0.053 SIDE CHAIN 8 A DC 7 0.070 SIDE CHAIN 8 A DG 9 0.178 SIDE CHAIN 8 B DG 14 0.064 SIDE CHAIN 9 A DC 7 0.124 SIDE CHAIN 9 A DG 9 0.116 SIDE CHAIN 9 B DG 11 0.080 SIDE CHAIN 9 B DC 12 0.075 SIDE CHAIN 9 B DG 14 0.065 SIDE CHAIN 10 A DC 7 0.081 SIDE CHAIN 10 A DG 9 0.154 SIDE CHAIN 10 B DG 14 0.069 SIDE CHAIN 11 A DG 9 0.177 SIDE CHAIN 11 B DG 17 0.062 SIDE CHAIN 12 A DC 7 0.070 SIDE CHAIN 12 A DG 9 0.175 SIDE CHAIN 12 B DG 14 0.058 SIDE CHAIN 13 A DG 9 0.176 SIDE CHAIN 13 B DG 14 0.067 SIDE CHAIN 14 A DG 9 0.167 SIDE CHAIN 14 B DG 14 0.068 SIDE CHAIN 15 A DG 9 0.218 SIDE CHAIN 15 B DG 14 0.065 SIDE CHAIN 16 A DG 9 0.184 SIDE CHAIN 16 B DG 14 0.060 SIDE CHAIN 16 B DG 17 0.060 SIDE CHAIN 17 A DC 7 0.078 SIDE CHAIN 17 A DG 9 0.174 SIDE CHAIN 17 B DG 14 0.060 SIDE CHAIN 18 A DG 9 0.158 SIDE CHAIN 18 B DG 14 0.064 SIDE CHAIN 19 A DC 7 0.073 SIDE CHAIN 19 A DG 9 0.175 SIDE CHAIN 19 B DG 14 0.065 SIDE CHAIN 19 B DG 17 0.057 SIDE CHAIN 20 A DC 7 0.064 SIDE CHAIN 20 A DG 9 0.172 SIDE CHAIN 20 B DG 14 0.063 SIDE CHAIN 1 1.82 0.30 108.30 110.12 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 4.99 0.30 108.30 113.29 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 4.05 0.30 108.30 112.35 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 3.68 0.30 108.30 111.98 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 6.40 0.60 106.00 112.40 B B B O4' C4' C3' DA DA DA 13 13 13 N 1 4.43 0.30 108.30 112.73 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 5.30 0.60 106.00 111.30 B B B O4' C4' C3' DA DA DA 15 15 15 N 1 -5.05 0.70 102.20 97.15 B B B C4' C3' C2' DA DA DA 15 15 15 N 1 5.59 0.30 108.30 113.89 B B B O4' C1' N9 DA DA DA 15 15 15 N 1 2.58 0.30 108.30 110.88 B B B O4' C1' N9 DG DG DG 17 17 17 N 1 3.04 0.30 108.30 111.34 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 3.35 0.50 106.80 110.15 B B B O4' C1' C2' DA DA DA 19 19 19 N 1 2.04 0.30 108.30 110.34 B B B O4' C1' N9 DA DA DA 19 19 19 N 2 2.19 0.30 108.30 110.49 A A A O4' C1' N9 DG DG DG 3 3 3 N 2 5.20 0.30 108.30 113.50 A A A O4' C1' N1 DC DC DC 7 7 7 N 2 4.02 0.30 108.30 112.32 A A A O4' C1' N9 DG DG DG 9 9 9 N 2 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DC DC DC 10 10 10 N 2 6.10 0.30 108.30 114.40 B B B O4' C1' N9 DG DG DG 11 11 11 N 2 6.24 0.60 106.00 112.24 B B B O4' C4' C3' DA DA DA 13 13 13 N 2 5.52 0.30 108.30 113.82 B B B O4' C1' N9 DA DA DA 13 13 13 N 2 7.32 1.20 119.70 127.02 B B B C3' O3' P DA DA DG 13 13 14 Y 2 1.93 0.30 108.30 110.23 B B B O4' C1' N9 DG DG DG 14 14 14 N 2 5.00 0.60 106.00 111.00 B B B O4' C4' C3' DA DA DA 15 15 15 N 2 -4.72 0.70 102.20 97.48 B B B C4' C3' C2' DA DA DA 15 15 15 N 2 5.61 0.30 108.30 113.91 B B B O4' C1' N9 DA DA DA 15 15 15 N 2 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 17 17 17 N 2 2.70 0.30 108.30 111.00 B B B O4' C1' N1 DC DC DC 18 18 18 N 2 2.49 0.30 108.30 110.79 B B B O4' C1' N9 DA DA DA 19 19 19 N 2 3.89 0.30 108.30 112.19 B B B O4' C1' N9 DG DG DG 20 20 20 N 3 1.81 0.30 108.30 110.11 A A A O4' C1' N9 DG DG DG 3 3 3 N 3 5.24 0.30 108.30 113.54 A A A O4' C1' N1 DC DC DC 7 7 7 N 3 3.77 0.30 108.30 112.07 A A A O4' C1' N9 DG DG DG 9 9 9 N 3 1.95 0.30 108.30 110.25 A A A O4' C1' N1 DC DC DC 10 10 10 N 3 6.15 0.30 108.30 114.45 B B B O4' C1' N9 DG DG DG 11 11 11 N 3 6.33 0.60 106.00 112.33 B B B O4' C4' C3' DA DA DA 13 13 13 N 3 3.86 0.30 108.30 112.16 B B B O4' C1' N9 DA DA DA 13 13 13 N 3 5.18 0.60 106.00 111.18 B B B O4' C4' C3' DA DA DA 15 15 15 N 3 -5.03 0.70 102.20 97.17 B B B C4' C3' C2' DA DA DA 15 15 15 N 3 5.41 0.30 108.30 113.71 B B B O4' C1' N9 DA DA DA 15 15 15 N 3 2.38 0.30 108.30 110.68 B B B O4' C1' N9 DG DG DG 17 17 17 N 3 3.06 0.30 108.30 111.36 B B B O4' C1' N1 DC DC DC 18 18 18 N 3 3.19 0.50 106.80 109.99 B B B O4' C1' C2' DA DA DA 19 19 19 N 3 2.18 0.30 108.30 110.48 B B B O4' C1' N9 DA DA DA 19 19 19 N 3 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 20 20 20 N 4 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 5.02 0.30 108.30 113.32 A A A O4' C1' N1 DC DC DC 7 7 7 N 4 4.05 0.30 108.30 112.35 A A A O4' C1' N9 DG DG DG 9 9 9 N 4 1.85 0.30 108.30 110.15 A A A O4' C1' N1 DC DC DC 10 10 10 N 4 5.13 0.30 108.30 113.43 B B B O4' C1' N9 DG DG DG 11 11 11 N 4 6.47 0.60 106.00 112.47 B B B O4' C4' C3' DA DA DA 13 13 13 N 4 4.13 0.30 108.30 112.43 B B B O4' C1' N9 DA DA DA 13 13 13 N 4 5.20 0.60 106.00 111.20 B B B O4' C4' C3' DA DA DA 15 15 15 N 4 -4.80 0.70 102.20 97.40 B B B C4' C3' C2' DA DA DA 15 15 15 N 4 5.69 0.30 108.30 113.99 B B B O4' C1' N9 DA DA DA 15 15 15 N 4 2.68 0.30 108.30 110.98 B B B O4' C1' N9 DG DG DG 17 17 17 N 4 2.87 0.30 108.30 111.17 B B B O4' C1' N1 DC DC DC 18 18 18 N 4 3.33 0.50 106.80 110.13 B B B O4' C1' C2' DA DA DA 19 19 19 N 4 2.31 0.30 108.30 110.61 B B B O4' C1' N9 DA DA DA 19 19 19 N 4 2.48 0.30 108.30 110.78 B B B O4' C1' N9 DG DG DG 20 20 20 N 5 2.26 0.30 108.30 110.56 A A A O4' C1' N9 DG DG DG 3 3 3 N 5 4.85 0.30 108.30 113.15 A A A O4' C1' N1 DC DC DC 7 7 7 N 5 4.25 0.30 108.30 112.55 A A A O4' C1' N9 DG DG DG 9 9 9 N 5 1.87 0.30 108.30 110.17 A A A O4' C1' N1 DC DC DC 10 10 10 N 5 4.44 0.30 108.30 112.74 B B B O4' C1' N9 DG DG DG 11 11 11 N 5 6.22 0.60 106.00 112.22 B B B O4' C4' C3' DA DA DA 13 13 13 N 5 4.49 0.30 108.30 112.79 B B B O4' C1' N9 DA DA DA 13 13 13 N 5 5.23 0.60 106.00 111.23 B B B O4' C4' C3' DA DA DA 15 15 15 N 5 -5.05 0.70 102.20 97.15 B B B C4' C3' C2' DA DA DA 15 15 15 N 5 5.31 0.30 108.30 113.61 B B B O4' C1' N9 DA DA DA 15 15 15 N 5 3.18 0.30 108.30 111.48 B B B O4' C1' N9 DG DG DG 17 17 17 N 5 2.86 0.30 108.30 111.16 B B B O4' C1' N1 DC DC DC 18 18 18 N 5 3.18 0.50 106.80 109.98 B B B O4' C1' C2' DA DA DA 19 19 19 N 5 2.48 0.30 108.30 110.78 B B B O4' C1' N9 DA DA DA 19 19 19 N 5 3.09 0.30 108.30 111.39 B B B O4' C1' N9 DG DG DG 20 20 20 N 6 2.82 0.30 108.30 111.12 A A A O4' C1' N9 DG DG DG 3 3 3 N 6 4.82 0.30 108.30 113.12 A A A O4' C1' N1 DC DC DC 7 7 7 N 6 3.52 0.30 108.30 111.82 A A A O4' C1' N9 DG DG DG 9 9 9 N 6 5.56 0.30 108.30 113.86 B B B O4' C1' N9 DG DG DG 11 11 11 N 6 6.39 0.60 106.00 112.39 B B B O4' C4' C3' DA DA DA 13 13 13 N 6 4.54 0.30 108.30 112.84 B B B O4' C1' N9 DA DA DA 13 13 13 N 6 5.26 0.60 106.00 111.26 B B B O4' C4' C3' DA DA DA 15 15 15 N 6 -4.96 0.70 102.20 97.24 B B B C4' C3' C2' DA DA DA 15 15 15 N 6 5.44 0.30 108.30 113.74 B B B O4' C1' N9 DA DA DA 15 15 15 N 6 2.77 0.30 108.30 111.07 B B B O4' C1' N9 DG DG DG 17 17 17 N 6 2.05 0.30 108.30 110.35 B B B O4' C1' N1 DC DC DC 18 18 18 N 6 3.43 0.30 108.30 111.73 B B B O4' C1' N9 DG DG DG 20 20 20 N 7 2.16 0.30 108.30 110.46 A A A O4' C1' N9 DG DG DG 3 3 3 N 7 7.19 0.30 108.30 115.49 A A A O4' C1' N1 DC DC DC 7 7 7 N 7 7.82 1.20 119.70 127.52 A A A C3' O3' P DC DC ATL 7 7 8 Y 7 6.42 0.30 108.30 114.72 A A A O4' C1' N9 DG DG DG 9 9 9 N 7 1.96 0.30 108.30 110.26 A A A O4' C1' N1 DC DC DC 10 10 10 N 7 5.03 0.30 108.30 113.33 B B B O4' C1' N9 DG DG DG 11 11 11 N 7 5.95 0.60 106.00 111.95 B B B O4' C4' C3' DA DA DA 13 13 13 N 7 3.60 0.30 108.30 111.90 B B B O4' C1' N9 DA DA DA 13 13 13 N 7 5.34 0.60 106.00 111.34 B B B O4' C4' C3' DA DA DA 15 15 15 N 7 -5.02 0.70 102.20 97.18 B B B C4' C3' C2' DA DA DA 15 15 15 N 7 5.58 0.30 108.30 113.88 B B B O4' C1' N9 DA DA DA 15 15 15 N 7 1.97 0.30 108.30 110.27 B B B O4' C1' N9 DG DG DG 17 17 17 N 7 2.56 0.30 108.30 110.86 B B B O4' C1' N9 DG DG DG 20 20 20 N 8 2.29 0.30 108.30 110.59 A A A O4' C1' N9 DG DG DG 3 3 3 N 8 5.41 0.30 108.30 113.71 A A A O4' C1' N1 DC DC DC 7 7 7 N 8 4.17 0.30 108.30 112.47 A A A O4' C1' N9 DG DG DG 9 9 9 N 8 1.98 0.30 108.30 110.28 A A A O4' C1' N1 DC DC DC 10 10 10 N 8 5.10 0.30 108.30 113.40 B B B O4' C1' N9 DG DG DG 11 11 11 N 8 6.31 0.60 106.00 112.31 B B B O4' C4' C3' DA DA DA 13 13 13 N 8 3.72 0.30 108.30 112.02 B B B O4' C1' N9 DA DA DA 13 13 13 N 8 5.41 0.60 106.00 111.41 B B B O4' C4' C3' DA DA DA 15 15 15 N 8 -5.05 0.70 102.20 97.15 B B B C4' C3' C2' DA DA DA 15 15 15 N 8 5.70 0.30 108.30 114.00 B B B O4' C1' N9 DA DA DA 15 15 15 N 8 2.17 0.30 108.30 110.47 B B B O4' C1' N9 DG DG DG 17 17 17 N 8 1.92 0.30 108.30 110.22 B B B O4' C1' N1 DC DC DC 18 18 18 N 8 2.74 0.30 108.30 111.04 B B B O4' C1' N9 DG DG DG 20 20 20 N 9 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 3 3 3 N 9 4.11 0.30 108.30 112.41 A A A O4' C1' N1 DC DC DC 7 7 7 N 9 2.11 0.30 108.30 110.41 A A A O4' C1' N1 DC DC DC 10 10 10 N 9 5.42 0.30 108.30 113.72 B B B O4' C1' N9 DG DG DG 11 11 11 N 9 5.93 0.60 106.00 111.93 B B B O4' C4' C3' DA DA DA 13 13 13 N 9 3.30 0.30 108.30 111.60 B B B O4' C1' N9 DA DA DA 13 13 13 N 9 5.33 0.60 106.00 111.33 B B B O4' C4' C3' DA DA DA 15 15 15 N 9 -4.94 0.70 102.20 97.26 B B B C4' C3' C2' DA DA DA 15 15 15 N 9 5.76 0.30 108.30 114.06 B B B O4' C1' N9 DA DA DA 15 15 15 N 9 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 17 17 17 N 9 1.98 0.30 108.30 110.28 B B B O4' C1' N1 DC DC DC 18 18 18 N 9 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 20 20 20 N 10 2.81 0.30 108.30 111.11 A A A O4' C1' N9 DG DG DG 3 3 3 N 10 4.81 0.30 108.30 113.11 A A A O4' C1' N1 DC DC DC 7 7 7 N 10 4.51 0.30 108.30 112.81 A A A O4' C1' N9 DG DG DG 9 9 9 N 10 1.97 0.30 108.30 110.27 A A A O4' C1' N1 DC DC DC 10 10 10 N 10 5.40 0.30 108.30 113.70 B B B O4' C1' N9 DG DG DG 11 11 11 N 10 6.33 0.60 106.00 112.33 B B B O4' C4' C3' DA DA DA 13 13 13 N 10 3.20 0.30 108.30 111.50 B B B O4' C1' N9 DA DA DA 13 13 13 N 10 7.22 1.20 119.70 126.92 B B B C3' O3' P DA DA DG 13 13 14 Y 10 5.24 0.60 106.00 111.24 B B B O4' C4' C3' DA DA DA 15 15 15 N 10 -5.06 0.70 102.20 97.14 B B B C4' C3' C2' DA DA DA 15 15 15 N 10 5.06 0.30 108.30 113.36 B B B O4' C1' N9 DA DA DA 15 15 15 N 10 2.52 0.30 108.30 110.82 B B B O4' C1' N9 DG DG DG 17 17 17 N 10 1.97 0.30 108.30 110.27 B B B O4' C1' N1 DC DC DC 18 18 18 N 10 2.25 0.30 108.30 110.55 B B B O4' C1' N9 DG DG DG 20 20 20 N 11 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DG DG DG 3 3 3 N 11 5.78 0.30 108.30 114.08 A A A O4' C1' N1 DC DC DC 7 7 7 N 11 3.75 0.30 108.30 112.05 A A A O4' C1' N9 DG DG DG 9 9 9 N 11 1.90 0.30 108.30 110.20 A A A O4' C1' N1 DC DC DC 10 10 10 N 11 4.95 0.30 108.30 113.25 B B B O4' C1' N9 DG DG DG 11 11 11 N 11 6.07 0.60 106.00 112.07 B B B O4' C4' C3' DA DA DA 13 13 13 N 11 4.35 0.30 108.30 112.65 B B B O4' C1' N9 DA DA DA 13 13 13 N 11 5.47 0.60 106.00 111.47 B B B O4' C4' C3' DA DA DA 15 15 15 N 11 -5.24 0.70 102.20 96.96 B B B C4' C3' C2' DA DA DA 15 15 15 N 11 5.47 0.30 108.30 113.77 B B B O4' C1' N9 DA DA DA 15 15 15 N 11 2.47 0.30 108.30 110.77 B B B O4' C1' N9 DG DG DG 17 17 17 N 11 1.90 0.30 108.30 110.20 B B B O4' C1' N1 DC DC DC 18 18 18 N 11 2.32 0.30 108.30 110.62 B B B O4' C1' N9 DG DG DG 20 20 20 N 12 2.17 0.30 108.30 110.47 A A A O4' C1' N9 DG DG DG 3 3 3 N 12 5.06 0.30 108.30 113.36 A A A O4' C1' N1 DC DC DC 7 7 7 N 12 3.65 0.30 108.30 111.95 A A A O4' C1' N9 DG DG DG 9 9 9 N 12 1.86 0.30 108.30 110.16 A A A O4' C1' N1 DC DC DC 10 10 10 N 12 6.75 0.30 108.30 115.05 B B B O4' C1' N9 DG DG DG 11 11 11 N 12 6.28 0.60 106.00 112.28 B B B O4' C4' C3' DA DA DA 13 13 13 N 12 4.20 0.30 108.30 112.50 B B B O4' C1' N9 DA DA DA 13 13 13 N 12 5.33 0.60 106.00 111.33 B B B O4' C4' C3' DA DA DA 15 15 15 N 12 -5.24 0.70 102.20 96.96 B B B C4' C3' C2' DA DA DA 15 15 15 N 12 5.35 0.30 108.30 113.65 B B B O4' C1' N9 DA DA DA 15 15 15 N 12 2.67 0.30 108.30 110.97 B B B O4' C1' N9 DG DG DG 17 17 17 N 12 2.67 0.30 108.30 110.97 B B B O4' C1' N1 DC DC DC 18 18 18 N 12 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DA DA DA 19 19 19 N 12 4.66 0.30 108.30 112.96 B B B O4' C1' N9 DG DG DG 20 20 20 N 13 2.13 0.30 108.30 110.43 A A A O4' C1' N9 DG DG DG 3 3 3 N 13 5.07 0.30 108.30 113.37 A A A O4' C1' N1 DC DC DC 7 7 7 N 13 3.96 0.30 108.30 112.26 A A A O4' C1' N9 DG DG DG 9 9 9 N 13 1.88 0.30 108.30 110.18 A A A O4' C1' N1 DC DC DC 10 10 10 N 13 5.80 0.30 108.30 114.10 B B B O4' C1' N9 DG DG DG 11 11 11 N 13 6.40 0.60 106.00 112.40 B B B O4' C4' C3' DA DA DA 13 13 13 N 13 4.22 0.30 108.30 112.52 B B B O4' C1' N9 DA DA DA 13 13 13 N 13 5.26 0.60 106.00 111.26 B B B O4' C4' C3' DA DA DA 15 15 15 N 13 -4.87 0.70 102.20 97.33 B B B C4' C3' C2' DA DA DA 15 15 15 N 13 5.28 0.30 108.30 113.58 B B B O4' C1' N9 DA DA DA 15 15 15 N 13 3.10 0.30 108.30 111.40 B B B O4' C1' N9 DG DG DG 17 17 17 N 13 2.95 0.30 108.30 111.25 B B B O4' C1' N1 DC DC DC 18 18 18 N 13 3.26 0.50 106.80 110.06 B B B O4' C1' C2' DA DA DA 19 19 19 N 13 2.43 0.30 108.30 110.73 B B B O4' C1' N9 DA DA DA 19 19 19 N 13 2.78 0.30 108.30 111.08 B B B O4' C1' N9 DG DG DG 20 20 20 N 14 1.84 0.30 108.30 110.14 A A A O4' C1' N9 DG DG DG 3 3 3 N 14 4.43 0.30 108.30 112.73 A A A O4' C1' N1 DC DC DC 7 7 7 N 14 3.95 0.30 108.30 112.25 A A A O4' C1' N9 DG DG DG 9 9 9 N 14 1.85 0.30 108.30 110.15 A A A O4' C1' N1 DC DC DC 10 10 10 N 14 5.88 0.30 108.30 114.18 B B B O4' C1' N9 DG DG DG 11 11 11 N 14 6.39 0.60 106.00 112.39 B B B O4' C4' C3' DA DA DA 13 13 13 N 14 4.18 0.30 108.30 112.48 B B B O4' C1' N9 DA DA DA 13 13 13 N 14 5.22 0.60 106.00 111.22 B B B O4' C4' C3' DA DA DA 15 15 15 N 14 -4.89 0.70 102.20 97.31 B B B C4' C3' C2' DA DA DA 15 15 15 N 14 5.31 0.30 108.30 113.61 B B B O4' C1' N9 DA DA DA 15 15 15 N 14 2.62 0.30 108.30 110.92 B B B O4' C1' N9 DG DG DG 17 17 17 N 14 3.38 0.30 108.30 111.68 B B B O4' C1' N1 DC DC DC 18 18 18 N 14 3.29 0.50 106.80 110.09 B B B O4' C1' C2' DA DA DA 19 19 19 N 14 2.15 0.30 108.30 110.45 B B B O4' C1' N9 DA DA DA 19 19 19 N 14 2.71 0.30 108.30 111.01 B B B O4' C1' N9 DG DG DG 20 20 20 N 15 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DG DG DG 3 3 3 N 15 5.45 0.30 108.30 113.75 A A A O4' C1' N1 DC DC DC 7 7 7 N 15 3.94 0.30 108.30 112.24 A A A O4' C1' N9 DG DG DG 9 9 9 N 15 6.28 0.30 108.30 114.58 B B B O4' C1' N9 DG DG DG 11 11 11 N 15 6.18 0.60 106.00 112.18 B B B O4' C4' C3' DA DA DA 13 13 13 N 15 5.59 0.30 108.30 113.89 B B B O4' C1' N9 DA DA DA 13 13 13 N 15 5.15 0.60 106.00 111.15 B B B O4' C4' C3' DA DA DA 15 15 15 N 15 -4.72 0.70 102.20 97.48 B B B C4' C3' C2' DA DA DA 15 15 15 N 15 5.72 0.30 108.30 114.02 B B B O4' C1' N9 DA DA DA 15 15 15 N 15 2.89 0.30 108.30 111.19 B B B O4' C1' N9 DG DG DG 17 17 17 N 15 2.98 0.30 108.30 111.28 B B B O4' C1' N1 DC DC DC 18 18 18 N 15 3.26 0.50 106.80 110.06 B B B O4' C1' C2' DA DA DA 19 19 19 N 15 2.40 0.30 108.30 110.70 B B B O4' C1' N9 DA DA DA 19 19 19 N 15 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DG DG DG 20 20 20 N 16 2.60 0.30 108.30 110.90 A A A O4' C1' N9 DG DG DG 3 3 3 N 16 4.19 0.30 108.30 112.49 A A A O4' C1' N1 DC DC DC 7 7 7 N 16 4.02 0.30 108.30 112.32 A A A O4' C1' N9 DG DG DG 9 9 9 N 16 1.84 0.30 108.30 110.14 A A A O4' C1' N1 DC DC DC 10 10 10 N 16 4.05 0.30 108.30 112.35 B B B O4' C1' N9 DG DG DG 11 11 11 N 16 6.25 0.60 106.00 112.25 B B B O4' C4' C3' DA DA DA 13 13 13 N 16 4.52 0.30 108.30 112.82 B B B O4' C1' N9 DA DA DA 13 13 13 N 16 5.26 0.60 106.00 111.26 B B B O4' C4' C3' DA DA DA 15 15 15 N 16 -4.93 0.70 102.20 97.27 B B B C4' C3' C2' DA DA DA 15 15 15 N 16 5.46 0.30 108.30 113.76 B B B O4' C1' N9 DA DA DA 15 15 15 N 16 2.88 0.30 108.30 111.18 B B B O4' C1' N9 DG DG DG 17 17 17 N 16 1.91 0.30 108.30 110.21 B B B O4' C1' N1 DC DC DC 18 18 18 N 16 3.39 0.30 108.30 111.69 B B B O4' C1' N9 DG DG DG 20 20 20 N 17 2.38 0.30 108.30 110.68 A A A O4' C1' N9 DG DG DG 3 3 3 N 17 5.44 0.30 108.30 113.74 A A A O4' C1' N1 DC DC DC 7 7 7 N 17 3.96 0.30 108.30 112.26 A A A O4' C1' N9 DG DG DG 9 9 9 N 17 2.10 0.30 108.30 110.40 A A A O4' C1' N1 DC DC DC 10 10 10 N 17 5.53 0.30 108.30 113.83 B B B O4' C1' N9 DG DG DG 11 11 11 N 17 6.15 0.60 106.00 112.15 B B B O4' C4' C3' DA DA DA 13 13 13 N 17 4.00 0.30 108.30 112.30 B B B O4' C1' N9 DA DA DA 13 13 13 N 17 5.30 0.60 106.00 111.30 B B B O4' C4' C3' DA DA DA 15 15 15 N 17 -4.90 0.70 102.20 97.30 B B B C4' C3' C2' DA DA DA 15 15 15 N 17 5.50 0.30 108.30 113.80 B B B O4' C1' N9 DA DA DA 15 15 15 N 17 2.16 0.30 108.30 110.46 B B B O4' C1' N9 DG DG DG 17 17 17 N 17 1.83 0.30 108.30 110.13 B B B O4' C1' N1 DC DC DC 18 18 18 N 17 2.65 0.30 108.30 110.95 B B B O4' C1' N9 DG DG DG 20 20 20 N 18 5.07 0.30 108.30 113.37 A A A O4' C1' N1 DC DC DC 7 7 7 N 18 3.84 0.30 108.30 112.14 A A A O4' C1' N9 DG DG DG 9 9 9 N 18 1.89 0.30 108.30 110.19 A A A O4' C1' N1 DC DC DC 10 10 10 N 18 5.72 0.30 108.30 114.02 B B B O4' C1' N9 DG DG DG 11 11 11 N 18 6.42 0.60 106.00 112.42 B B B O4' C4' C3' DA DA DA 13 13 13 N 18 4.26 0.30 108.30 112.56 B B B O4' C1' N9 DA DA DA 13 13 13 N 18 5.32 0.60 106.00 111.32 B B B O4' C4' C3' DA DA DA 15 15 15 N 18 -5.20 0.70 102.20 97.00 B B B C4' C3' C2' DA DA DA 15 15 15 N 18 5.24 0.30 108.30 113.54 B B B O4' C1' N9 DA DA DA 15 15 15 N 18 2.60 0.30 108.30 110.90 B B B O4' C1' N9 DG DG DG 17 17 17 N 18 2.90 0.30 108.30 111.20 B B B O4' C1' N1 DC DC DC 18 18 18 N 18 3.22 0.50 106.80 110.02 B B B O4' C1' C2' DA DA DA 19 19 19 N 18 2.33 0.30 108.30 110.63 B B B O4' C1' N9 DA DA DA 19 19 19 N 18 2.96 0.30 108.30 111.26 B B B O4' C1' N9 DG DG DG 20 20 20 N 19 2.48 0.30 108.30 110.78 A A A O4' C1' N9 DG DG DG 3 3 3 N 19 4.10 0.30 108.30 112.40 A A A O4' C1' N1 DC DC DC 7 7 7 N 19 4.49 0.30 108.30 112.79 A A A O4' C1' N9 DG DG DG 9 9 9 N 19 6.12 0.30 108.30 114.42 B B B O4' C1' N9 DG DG DG 11 11 11 N 19 6.41 0.60 106.00 112.41 B B B O4' C4' C3' DA DA DA 13 13 13 N 19 4.21 0.30 108.30 112.51 B B B O4' C1' N9 DA DA DA 13 13 13 N 19 5.33 0.60 106.00 111.33 B B B O4' C4' C3' DA DA DA 15 15 15 N 19 -5.12 0.70 102.20 97.08 B B B C4' C3' C2' DA DA DA 15 15 15 N 19 5.22 0.30 108.30 113.52 B B B O4' C1' N9 DA DA DA 15 15 15 N 19 2.77 0.30 108.30 111.07 B B B O4' C1' N9 DG DG DG 17 17 17 N 19 1.99 0.30 108.30 110.29 B B B O4' C1' N1 DC DC DC 18 18 18 N 19 2.16 0.30 108.30 110.46 B B B O4' C1' N9 DG DG DG 20 20 20 N 20 4.10 0.30 108.30 112.40 A A A O4' C1' N1 DC DC DC 7 7 7 N 20 4.00 0.30 108.30 112.30 A A A O4' C1' N9 DG DG DG 9 9 9 N 20 1.81 0.30 108.30 110.11 A A A O4' C1' N1 DC DC DC 10 10 10 N 20 5.41 0.30 108.30 113.71 B B B O4' C1' N9 DG DG DG 11 11 11 N 20 6.34 0.60 106.00 112.34 B B B O4' C4' C3' DA DA DA 13 13 13 N 20 4.35 0.30 108.30 112.65 B B B O4' C1' N9 DA DA DA 13 13 13 N 20 5.20 0.60 106.00 111.20 B B B O4' C4' C3' DA DA DA 15 15 15 N 20 -5.05 0.70 102.20 97.15 B B B C4' C3' C2' DA DA DA 15 15 15 N 20 5.34 0.30 108.30 113.64 B B B O4' C1' N9 DA DA DA 15 15 15 N 20 2.63 0.30 108.30 110.93 B B B O4' C1' N9 DG DG DG 17 17 17 N 20 2.86 0.30 108.30 111.16 B B B O4' C1' N1 DC DC DC 18 18 18 N 20 3.01 0.50 106.80 109.81 B B B O4' C1' C2' DA DA DA 19 19 19 N 20 2.28 0.30 108.30 110.58 B B B O4' C1' N9 DA DA DA 19 19 19 N 20 3.49 0.30 108.30 111.79 B B B O4' C1' N9 DG DG DG 20 20 20 N 5'-D(*C)-R(P*(ATL))-D(P*GP*C)-R(P*(ATL)P*(ATL))-D(P*C)-R(P*(ATL))-D(P*GP*C)-3' Solution structure of alfa-L-LNA:DNA duplex 1 N N 2 N N covale 1.623 A DC 1 A O3' DC 1 1_555 A ATL 2 A P ATL 2 1_555 covale 1.615 A ATL 2 A O3' ATL 2 1_555 A DG 3 A P DG 3 1_555 covale 1.619 A DC 4 A O3' DC 4 1_555 A ATL 5 A P ATL 5 1_555 covale 1.611 A ATL 5 A O3' ATL 5 1_555 A ATL 6 A P ATL 6 1_555 covale 1.613 A ATL 6 A O3' ATL 6 1_555 A DC 7 A P DC 7 1_555 covale 1.620 A DC 7 A O3' DC 7 1_555 A ATL 8 A P ATL 8 1_555 covale 1.615 A ATL 8 A O3' ATL 8 1_555 A DG 9 A P DG 9 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A ATL 2 A N3 ATL 2 1_555 B DA 19 B N1 DA 9 1_555 hydrog WATSON-CRICK A ATL 2 A O4 ATL 2 1_555 B DA 19 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 17 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 17 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 17 B N2 DG 7 1_555 hydrog WATSON-CRICK A ATL 5 A N3 ATL 5 1_555 B DA 16 B N1 DA 6 1_555 hydrog WATSON-CRICK A ATL 5 A O4 ATL 5 1_555 B DA 16 B N6 DA 6 1_555 hydrog WATSON-CRICK A ATL 6 A N3 ATL 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A ATL 6 A O4 ATL 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A ATL 8 A N3 ATL 8 1_555 B DA 13 B N1 DA 3 1_555 hydrog WATSON-CRICK A ATL 8 A O4 ATL 8 1_555 B DA 13 B N6 DA 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 LOCKED NUCLEIC ACID LOCKED NUCLEIC ACID, LNA, DNA 1GV6 PDB 1 1GV6 1GV6 PDB 2 1GV6 1 10 1GV6 1 10 1GV6 A 1 1 10 11 20 1GV6 11 20 1GV6 B 2 1 10 1 P 1