0.017213
0.009938
0.000000
0.000000
0.019876
0.000000
0.000000
0.000000
0.006425
0.00000
0.00000
0.00000
Rosano, C.
Zuccotti, S.
Stefani, M.
Bucciantini, M.
Ramponi, G.
Bolognesi, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
58.095
58.095
155.645
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
321
785
10.1016/S0022-2836(02)00713-1
12206761
Crystal Structure and Anion Binding in the Prokaryotic Hydrogenase Maturation Factor Hypf Acylphosphatase-Like Domain
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
SINGLE WAVELENGTH
M
x-ray
1
0.8443
1.0
BW7B
EMBL/DESY, HAMBURG
0.8443
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7B
10461.952
HYDROGENASE MATURATION PROTEIN HYPF
ACYLPHOSPHATASE-LIKE DOMAIN, RESIDUES 1-91
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
145
nat
water
no
no
MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPEVFLVQLYQHCPPLARIDSVEREPFI
WSQLPTEFTIR
MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPEVFLVQLYQHCPPLARIDSVEREPFI
WSQLPTEFTIR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
562
ESCHERICHIA COLI
562
ESCHERICHIA COLI
1
2.52
51.3
8.50
pH 8.50
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
1
0
2002-09-12
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-07-24
_diffrn_source.pdbx_synchrotron_site
HYDROGENASE MATURATION PROTEIN HYPF "ACYLPHOSPHATASE-LIKE" N-TERMINAL DOMAIN (HYPF-ACP) IN COMPLEX WITH A SUBSTRATE. CRYSTAL GROWN IN THE PRESENCE OF CARBAMOYLPHOSPHATE
PDBE
Y
PDBE
2002-04-11
REL
1
A
O
HOH
2021
6.80
CL
CHLORIDE ION
SO4
SULFATE ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
CL
1092
2
CL
CL
1092
A
SO4
1093
3
SO4
SO4
1093
A
TRS
1094
4
TRS
TRS
1094
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
n
1
1
A
n
2
2
A
n
3
3
A
ASN
4
n
4
ASN
4
A
THR
5
n
5
THR
5
A
SER
6
n
6
SER
6
A
CYS
7
n
7
CYS
7
A
GLY
8
n
8
GLY
8
A
VAL
9
n
9
VAL
9
A
GLN
10
n
10
GLN
10
A
LEU
11
n
11
LEU
11
A
ARG
12
n
12
ARG
12
A
ILE
13
n
13
ILE
13
A
ARG
14
n
14
ARG
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
GLN
18
n
18
GLN
18
A
GLY
19
n
19
GLY
19
A
VAL
20
n
20
VAL
20
A
GLY
21
n
21
GLY
21
A
PHE
22
n
22
PHE
22
A
ARG
23
n
23
ARG
23
A
PRO
24
n
24
PRO
24
A
PHE
25
n
25
PHE
25
A
VAL
26
n
26
VAL
26
A
TRP
27
n
27
TRP
27
A
GLN
28
n
28
GLN
28
A
LEU
29
n
29
LEU
29
A
ALA
30
n
30
ALA
30
A
GLN
31
n
31
GLN
31
A
GLN
32
n
32
GLN
32
A
LEU
33
n
33
LEU
33
A
ASN
34
n
34
ASN
34
A
LEU
35
n
35
LEU
35
A
HIS
36
n
36
HIS
36
A
GLY
37
n
37
GLY
37
A
ASP
38
n
38
ASP
38
A
VAL
39
n
39
VAL
39
A
CYS
40
n
40
CYS
40
A
ASN
41
n
41
ASN
41
A
ASP
42
n
42
ASP
42
A
GLY
43
n
43
GLY
43
A
ASP
44
n
44
ASP
44
A
GLY
45
n
45
GLY
45
A
VAL
46
n
46
VAL
46
A
GLU
47
n
47
GLU
47
A
VAL
48
n
48
VAL
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
ARG
51
n
51
ARG
51
A
GLU
52
n
52
GLU
52
A
ASP
53
n
53
ASP
53
A
PRO
54
n
54
PRO
54
A
GLU
55
n
55
GLU
55
A
VAL
56
n
56
VAL
56
A
PHE
57
n
57
PHE
57
A
LEU
58
n
58
LEU
58
A
VAL
59
n
59
VAL
59
A
GLN
60
n
60
GLN
60
A
LEU
61
n
61
LEU
61
A
TYR
62
n
62
TYR
62
A
GLN
63
n
63
GLN
63
A
HIS
64
n
64
HIS
64
A
CYS
65
n
65
CYS
65
A
PRO
66
n
66
PRO
66
A
PRO
67
n
67
PRO
67
A
LEU
68
n
68
LEU
68
A
ALA
69
n
69
ALA
69
A
ARG
70
n
70
ARG
70
A
ILE
71
n
71
ILE
71
A
ASP
72
n
72
ASP
72
A
SER
73
n
73
SER
73
A
VAL
74
n
74
VAL
74
A
GLU
75
n
75
GLU
75
A
ARG
76
n
76
ARG
76
A
GLU
77
n
77
GLU
77
A
PRO
78
n
78
PRO
78
A
PHE
79
n
79
PHE
79
A
ILE
80
n
80
ILE
80
A
TRP
81
n
81
TRP
81
A
SER
82
n
82
SER
82
A
GLN
83
n
83
GLN
83
A
LEU
84
n
84
LEU
84
A
PRO
85
n
85
PRO
85
A
THR
86
n
86
THR
86
A
GLU
87
n
87
GLU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
ILE
90
n
90
ILE
90
A
ARG
91
n
91
ARG
91
A
author_and_software_defined_assembly
PQS
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
155.6450000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_556
x-y,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
155.6450000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_556
-x,-x+y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
155.6450000000
A
N
TRP
81
A
N
TRP
81
A
O
SER
6
A
O
SER
6
A
N
ILE
13
A
N
ILE
13
A
O
VAL
46
A
O
VAL
46
A
N
ARG
49
A
N
ARG
49
A
O
ASP
38
A
O
ASP
38
A
N
VAL
39
A
N
VAL
39
A
O
THR
89
A
O
THR
89
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
A
O
O
HOH
HOH
2097
2098
1.52
1
A
A
O1
O
TRS
HOH
1094
2145
1.88
1
A
A
O
O
CYS
HOH
7
2003
1.95
A
1
A
A
O
O
HOH
HOH
2101
2102
1.96
1
A
A
OG
CD2
SER
LEU
6
84
2.07
1
A
A
O
O
HOH
HOH
2073
2075
2.11
1
A
A
OE1
O
GLU
HOH
47
2082
2.12
1
A
A
NH2
O
ARG
HOH
91
2082
2.14
1
A
A
O
O
HOH
HOH
2020
2044
2.17
1
A
A
OE1
O
GLN
HOH
10
2013
2.18
1
A
CYS
7
12.35
A
1
A
CYS
7
-13.18
B
1
8.90
1.10
114.20
123.10
A
A
A
CA
CB
SG
CYS
CYS
CYS
7
7
7
B
B
B
N
1
15.95
1.10
114.20
130.15
A
A
A
CA
CB
SG
CYS
CYS
CYS
40
40
40
B
N
1
A
A
CB
SG
CYS
CYS
40
40
-0.099
0.016
1.812
1.713
A
N
1
A
A
O
O
HOH
HOH
2008
2043
2.02
1_555
17_555
1
A
A
O
O
HOH
HOH
2084
2132
2.17
1_555
4_556
16.94
1.29000
0.64000
0.00000
1.29000
0.00000
-1.93000
0.979
0.973
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.168
0.134
0.136
1.27
10.00
1269
23971
5.000
93.3
1.650
0.037
RANDOM
1
THROUGHOUT
SIRAS
0.042
0.043
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.27
10.00
145
872
14
0
713
0.020
0.021
758
0.000
0.020
684
2.048
1.955
1035
2.514
3.000
1593
5.604
3.000
91
19.729
15.000
141
0.160
0.200
110
0.020
0.020
836
0.004
0.020
158
0.240
0.300
141
0.239
0.300
688
0.237
0.500
108
0.336
0.500
1
0.313
0.300
5
0.322
0.300
35
0.380
0.500
25
4.233
1.500
448
5.649
2.000
739
8.060
3.000
310
9.774
3.000
296
0.2770
0.2380
1.30
88
1805
20
1.300
20.000
1GXT
28517
2.000
0.05700
1
16.3000
10.500
92.9
refinement
REFMAC
5.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
autoSHARP
HYDROGENASE MATURATION PROTEIN HYPF
Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with Sulfate
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLY
21
A
GLY
21
HELX_P
A
ASN
34
A
ASN
34
1
1
14
A
PRO
54
A
PRO
54
HELX_P
A
HIS
64
A
HIS
64
1
2
11
disulf
2.424
A
A
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
7
A
SG
CYS
7
5_556
PHOSPHATASE
PHOSPHATASE, ACYLPHOSPHATASES, HYDROGENASE MATURATIONS, FIBRIL FORMATION, ZINC-FINGER
HYPF_ECOLI
UNP
1
P30131
1
91
1GXT
1
91
P30131
A
1
1
91
5
anti-parallel
anti-parallel
anti-parallel
parallel
A
ARG
70
A
ARG
70
A
TRP
81
A
TRP
81
A
SER
6
A
SER
6
A
LYS
16
A
LYS
16
A
VAL
46
A
VAL
46
A
LEU
50
A
LEU
50
A
GLY
37
A
GLY
37
A
ASN
41
A
ASN
41
A
PHE
88
A
PHE
88
A
ILE
90
A
ILE
90
BINDING SITE FOR RESIDUE CL A1092
Software
6
BINDING SITE FOR RESIDUE SO4 A1093
Software
10
BINDING SITE FOR RESIDUE TRS A1094
Software
6
A
VAL
17
A
VAL
17
6
1_555
A
GLN
18
A
GLN
18
6
1_555
A
ARG
23
A
ARG
23
6
1_555
A
ASN
41
A
ASN
41
6
1_555
A
VAL
46
A
VAL
46
6
1_555
A
SO4
1093
C
SO4
6
1_555
A
VAL
17
A
VAL
17
10
1_555
A
GLN
18
A
GLN
18
10
1_555
A
GLY
19
A
GLY
19
10
1_555
A
VAL
20
A
VAL
20
10
1_555
A
GLY
21
A
GLY
21
10
1_555
A
PHE
22
A
PHE
22
10
1_555
A
ARG
23
A
ARG
23
10
1_555
A
CL
1092
B
CL
10
1_555
A
HOH
2142
E
HOH
10
1_555
A
HOH
2143
E
HOH
10
1_555
A
ARG
49
A
ARG
49
6
1_555
A
ILE
80
A
ILE
80
6
1_555
A
TRP
81
A
TRP
81
6
1_555
A
SER
82
A
SER
82
6
1_555
A
HOH
2144
E
HOH
6
1_555
A
HOH
2145
E
HOH
6
1_555
155
H 3 2