0.017213 0.009938 0.000000 0.000000 0.019876 0.000000 0.000000 0.000000 0.006425 0.00000 0.00000 0.00000 Rosano, C. Zuccotti, S. Stefani, M. Bucciantini, M. Ramponi, G. Bolognesi, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 58.095 58.095 155.645 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 321 785 10.1016/S0022-2836(02)00713-1 12206761 Crystal Structure and Anion Binding in the Prokaryotic Hydrogenase Maturation Factor Hypf Acylphosphatase-Like Domain 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 SINGLE WAVELENGTH M x-ray 1 0.8443 1.0 BW7B EMBL/DESY, HAMBURG 0.8443 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 10461.952 HYDROGENASE MATURATION PROTEIN HYPF ACYLPHOSPHATASE-LIKE DOMAIN, RESIDUES 1-91 1 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 145 nat water no no MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPEVFLVQLYQHCPPLARIDSVEREPFI WSQLPTEFTIR MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPEVFLVQLYQHCPPLARIDSVEREPFI WSQLPTEFTIR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 562 ESCHERICHIA COLI 562 ESCHERICHIA COLI 1 2.52 51.3 8.50 pH 8.50 diffrn_source repository Initial release Version format compliance Version format compliance Data collection 1 0 2002-09-12 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-07-24 _diffrn_source.pdbx_synchrotron_site HYDROGENASE MATURATION PROTEIN HYPF "ACYLPHOSPHATASE-LIKE" N-TERMINAL DOMAIN (HYPF-ACP) IN COMPLEX WITH A SUBSTRATE. CRYSTAL GROWN IN THE PRESENCE OF CARBAMOYLPHOSPHATE PDBE Y PDBE 2002-04-11 REL 1 A O HOH 2021 6.80 CL CHLORIDE ION SO4 SULFATE ION TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water CL 1092 2 CL CL 1092 A SO4 1093 3 SO4 SO4 1093 A TRS 1094 4 TRS TRS 1094 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2093 5 HOH HOH 2093 A HOH 2094 5 HOH HOH 2094 A HOH 2095 5 HOH HOH 2095 A HOH 2096 5 HOH HOH 2096 A HOH 2097 5 HOH HOH 2097 A HOH 2098 5 HOH HOH 2098 A HOH 2099 5 HOH HOH 2099 A HOH 2100 5 HOH HOH 2100 A HOH 2101 5 HOH HOH 2101 A HOH 2102 5 HOH HOH 2102 A HOH 2103 5 HOH HOH 2103 A HOH 2104 5 HOH HOH 2104 A HOH 2105 5 HOH HOH 2105 A HOH 2106 5 HOH HOH 2106 A HOH 2107 5 HOH HOH 2107 A HOH 2108 5 HOH HOH 2108 A HOH 2109 5 HOH HOH 2109 A HOH 2110 5 HOH HOH 2110 A HOH 2111 5 HOH HOH 2111 A HOH 2112 5 HOH HOH 2112 A HOH 2113 5 HOH HOH 2113 A HOH 2114 5 HOH HOH 2114 A HOH 2115 5 HOH HOH 2115 A HOH 2116 5 HOH HOH 2116 A HOH 2117 5 HOH HOH 2117 A HOH 2118 5 HOH HOH 2118 A HOH 2119 5 HOH HOH 2119 A HOH 2120 5 HOH HOH 2120 A HOH 2121 5 HOH HOH 2121 A HOH 2122 5 HOH HOH 2122 A HOH 2123 5 HOH HOH 2123 A HOH 2124 5 HOH HOH 2124 A HOH 2125 5 HOH HOH 2125 A HOH 2126 5 HOH HOH 2126 A HOH 2127 5 HOH HOH 2127 A HOH 2128 5 HOH HOH 2128 A HOH 2129 5 HOH HOH 2129 A HOH 2130 5 HOH HOH 2130 A HOH 2131 5 HOH HOH 2131 A HOH 2132 5 HOH HOH 2132 A HOH 2133 5 HOH HOH 2133 A HOH 2134 5 HOH HOH 2134 A HOH 2135 5 HOH HOH 2135 A HOH 2136 5 HOH HOH 2136 A HOH 2137 5 HOH HOH 2137 A HOH 2138 5 HOH HOH 2138 A HOH 2139 5 HOH HOH 2139 A HOH 2140 5 HOH HOH 2140 A HOH 2141 5 HOH HOH 2141 A HOH 2142 5 HOH HOH 2142 A HOH 2143 5 HOH HOH 2143 A HOH 2144 5 HOH HOH 2144 A HOH 2145 5 HOH HOH 2145 A n 1 1 A n 2 2 A n 3 3 A ASN 4 n 4 ASN 4 A THR 5 n 5 THR 5 A SER 6 n 6 SER 6 A CYS 7 n 7 CYS 7 A GLY 8 n 8 GLY 8 A VAL 9 n 9 VAL 9 A GLN 10 n 10 GLN 10 A LEU 11 n 11 LEU 11 A ARG 12 n 12 ARG 12 A ILE 13 n 13 ILE 13 A ARG 14 n 14 ARG 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A GLN 18 n 18 GLN 18 A GLY 19 n 19 GLY 19 A VAL 20 n 20 VAL 20 A GLY 21 n 21 GLY 21 A PHE 22 n 22 PHE 22 A ARG 23 n 23 ARG 23 A PRO 24 n 24 PRO 24 A PHE 25 n 25 PHE 25 A VAL 26 n 26 VAL 26 A TRP 27 n 27 TRP 27 A GLN 28 n 28 GLN 28 A LEU 29 n 29 LEU 29 A ALA 30 n 30 ALA 30 A GLN 31 n 31 GLN 31 A GLN 32 n 32 GLN 32 A LEU 33 n 33 LEU 33 A ASN 34 n 34 ASN 34 A LEU 35 n 35 LEU 35 A HIS 36 n 36 HIS 36 A GLY 37 n 37 GLY 37 A ASP 38 n 38 ASP 38 A VAL 39 n 39 VAL 39 A CYS 40 n 40 CYS 40 A ASN 41 n 41 ASN 41 A ASP 42 n 42 ASP 42 A GLY 43 n 43 GLY 43 A ASP 44 n 44 ASP 44 A GLY 45 n 45 GLY 45 A VAL 46 n 46 VAL 46 A GLU 47 n 47 GLU 47 A VAL 48 n 48 VAL 48 A ARG 49 n 49 ARG 49 A LEU 50 n 50 LEU 50 A ARG 51 n 51 ARG 51 A GLU 52 n 52 GLU 52 A ASP 53 n 53 ASP 53 A PRO 54 n 54 PRO 54 A GLU 55 n 55 GLU 55 A VAL 56 n 56 VAL 56 A PHE 57 n 57 PHE 57 A LEU 58 n 58 LEU 58 A VAL 59 n 59 VAL 59 A GLN 60 n 60 GLN 60 A LEU 61 n 61 LEU 61 A TYR 62 n 62 TYR 62 A GLN 63 n 63 GLN 63 A HIS 64 n 64 HIS 64 A CYS 65 n 65 CYS 65 A PRO 66 n 66 PRO 66 A PRO 67 n 67 PRO 67 A LEU 68 n 68 LEU 68 A ALA 69 n 69 ALA 69 A ARG 70 n 70 ARG 70 A ILE 71 n 71 ILE 71 A ASP 72 n 72 ASP 72 A SER 73 n 73 SER 73 A VAL 74 n 74 VAL 74 A GLU 75 n 75 GLU 75 A ARG 76 n 76 ARG 76 A GLU 77 n 77 GLU 77 A PRO 78 n 78 PRO 78 A PHE 79 n 79 PHE 79 A ILE 80 n 80 ILE 80 A TRP 81 n 81 TRP 81 A SER 82 n 82 SER 82 A GLN 83 n 83 GLN 83 A LEU 84 n 84 LEU 84 A PRO 85 n 85 PRO 85 A THR 86 n 86 THR 86 A GLU 87 n 87 GLU 87 A PHE 88 n 88 PHE 88 A THR 89 n 89 THR 89 A ILE 90 n 90 ILE 90 A ARG 91 n 91 ARG 91 A author_and_software_defined_assembly PQS 6 hexameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 155.6450000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_556 x-y,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 155.6450000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_556 -x,-x+y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 155.6450000000 A N TRP 81 A N TRP 81 A O SER 6 A O SER 6 A N ILE 13 A N ILE 13 A O VAL 46 A O VAL 46 A N ARG 49 A N ARG 49 A O ASP 38 A O ASP 38 A N VAL 39 A N VAL 39 A O THR 89 A O THR 89 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A LYS 3 A LYS 3 1 Y 1 A A O O HOH HOH 2097 2098 1.52 1 A A O1 O TRS HOH 1094 2145 1.88 1 A A O O CYS HOH 7 2003 1.95 A 1 A A O O HOH HOH 2101 2102 1.96 1 A A OG CD2 SER LEU 6 84 2.07 1 A A O O HOH HOH 2073 2075 2.11 1 A A OE1 O GLU HOH 47 2082 2.12 1 A A NH2 O ARG HOH 91 2082 2.14 1 A A O O HOH HOH 2020 2044 2.17 1 A A OE1 O GLN HOH 10 2013 2.18 1 A CYS 7 12.35 A 1 A CYS 7 -13.18 B 1 8.90 1.10 114.20 123.10 A A A CA CB SG CYS CYS CYS 7 7 7 B B B N 1 15.95 1.10 114.20 130.15 A A A CA CB SG CYS CYS CYS 40 40 40 B N 1 A A CB SG CYS CYS 40 40 -0.099 0.016 1.812 1.713 A N 1 A A O O HOH HOH 2008 2043 2.02 1_555 17_555 1 A A O O HOH HOH 2084 2132 2.17 1_555 4_556 16.94 1.29000 0.64000 0.00000 1.29000 0.00000 -1.93000 0.979 0.973 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.168 0.134 0.136 1.27 10.00 1269 23971 5.000 93.3 1.650 0.037 RANDOM 1 THROUGHOUT SIRAS 0.042 0.043 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.27 10.00 145 872 14 0 713 0.020 0.021 758 0.000 0.020 684 2.048 1.955 1035 2.514 3.000 1593 5.604 3.000 91 19.729 15.000 141 0.160 0.200 110 0.020 0.020 836 0.004 0.020 158 0.240 0.300 141 0.239 0.300 688 0.237 0.500 108 0.336 0.500 1 0.313 0.300 5 0.322 0.300 35 0.380 0.500 25 4.233 1.500 448 5.649 2.000 739 8.060 3.000 310 9.774 3.000 296 0.2770 0.2380 1.30 88 1805 20 1.300 20.000 1GXT 28517 2.000 0.05700 1 16.3000 10.500 92.9 refinement REFMAC 5.0 data reduction DENZO data scaling SCALEPACK phasing autoSHARP HYDROGENASE MATURATION PROTEIN HYPF Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with Sulfate 1 N N 2 N N 3 N N 4 N N 5 N N A GLY 21 A GLY 21 HELX_P A ASN 34 A ASN 34 1 1 14 A PRO 54 A PRO 54 HELX_P A HIS 64 A HIS 64 1 2 11 disulf 2.424 A A A CYS 7 A SG CYS 7 1_555 A CYS 7 A SG CYS 7 5_556 PHOSPHATASE PHOSPHATASE, ACYLPHOSPHATASES, HYDROGENASE MATURATIONS, FIBRIL FORMATION, ZINC-FINGER HYPF_ECOLI UNP 1 P30131 1 91 1GXT 1 91 P30131 A 1 1 91 5 anti-parallel anti-parallel anti-parallel parallel A ARG 70 A ARG 70 A TRP 81 A TRP 81 A SER 6 A SER 6 A LYS 16 A LYS 16 A VAL 46 A VAL 46 A LEU 50 A LEU 50 A GLY 37 A GLY 37 A ASN 41 A ASN 41 A PHE 88 A PHE 88 A ILE 90 A ILE 90 BINDING SITE FOR RESIDUE CL A1092 Software 6 BINDING SITE FOR RESIDUE SO4 A1093 Software 10 BINDING SITE FOR RESIDUE TRS A1094 Software 6 A VAL 17 A VAL 17 6 1_555 A GLN 18 A GLN 18 6 1_555 A ARG 23 A ARG 23 6 1_555 A ASN 41 A ASN 41 6 1_555 A VAL 46 A VAL 46 6 1_555 A SO4 1093 C SO4 6 1_555 A VAL 17 A VAL 17 10 1_555 A GLN 18 A GLN 18 10 1_555 A GLY 19 A GLY 19 10 1_555 A VAL 20 A VAL 20 10 1_555 A GLY 21 A GLY 21 10 1_555 A PHE 22 A PHE 22 10 1_555 A ARG 23 A ARG 23 10 1_555 A CL 1092 B CL 10 1_555 A HOH 2142 E HOH 10 1_555 A HOH 2143 E HOH 10 1_555 A ARG 49 A ARG 49 6 1_555 A ILE 80 A ILE 80 6 1_555 A TRP 81 A TRP 81 6 1_555 A SER 82 A SER 82 6 1_555 A HOH 2144 E HOH 6 1_555 A HOH 2145 E HOH 6 1_555 155 H 3 2